Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-29/megassr/results/hub_GCA_007477745.1/fasta/hub_GCA_007477745.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              42
Total size of examined sequences (bp):           4720325
Total number of identified SSRs:                 25
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	8
4	1
5	3
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AT	-	-	-	1							1
CG	-	-	-	2							2
GC	-	-	-	2							2
TA	-	-	-	1							1
CCG	-	-	2								2
CGG	-	-	2								2
GCA	-	-	1								1
GCC	-	-	1								1
GCG	-	-	1								1
GCT	-	-	1								1
GCCA	-	1									1
CGCGG	1										1
GCGCG	1										1
GGCGC	1										1
AAGCCG	1										1
ACCACG										1	1
CCGCGG	1										1
CGACTT	1										1
CTGGCG	1										1
GCCAGC	1										1
TAAAAA	1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AT/AT	-	-	-	2							2
CG/CG	-	-	-	4							4
AGC/CTG	-	-	2								2
CCG/CGG	-	-	6								6
AGCC/CTGG	-	1									1
CCGCG/CGCGG	3										3
AAAAAT/ATTTTT	1										1
AAGCCG/CGGCTT	1										1
AAGTCG/ACTTCG	1										1
ACCACG/CGTGGT										1	1
AGCGCC/CGCTGG	2										2
CCGCGG/CCGCGG	1										1
