Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-78/megassr/results/hub_GCA_007230535.1/fasta/hub_GCA_007230535.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              30
Total size of examined sequences (bp):           4845883
Total number of identified SSRs:                 22
Number of SSR containing sequences:              11
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	10
4	1
5	2
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
CG	-	-	-	3				3
GC	-	-	-	1				1
CAT	-	-	1					1
CCG	-	-	1					1
CGC	-	-		1				1
CGG	-	-	1					1
GCA	-	-			1			1
GCC	-	-	1					1
GCG	-	-	2					2
GCT	-	-	1					1
TGG	-	-	1					1
GCCA	-	1						1
GCGCG	1							1
GGCGC	1							1
CGACTT	1							1
CGCCAG	1							1
GCCAGC	1							1
GCCAGT							1	1
TGGTCG					1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
CG/CG	-	-	-	4				4
ACC/GGT	-	-	1					1
AGC/CTG	-	-	1		1			2
ATC/ATG	-	-	1					1
CCG/CGG	-	-	5	1				6
AGCC/CTGG	-	1						1
CCGCG/CGCGG	2							2
AAGTCG/ACTTCG	1							1
ACCACG/CGTGGT					1			1
ACTGGC/AGTGCC							1	1
AGCGCC/CGCTGG	2							2
