Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-23/megassr/results/hub_GCA_006521375.1/fasta/hub_GCA_006521375.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              41
Total size of examined sequences (bp):           4633391
Total number of identified SSRs:                 28
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	10
4	1
5	5
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG	-	-	-	5					5
GC	-	-	-	1					1
CCG	-	-	1						1
CGG	-	-	3	1					4
GCA	-	-						1	1
GCG	-	-	2						2
GCT	-	-	1						1
GGC	-	-		1					1
TATT	-	1							1
CGCGC	1								1
GCGCA	1								1
GCGCG	1								1
GGCGC	1								1
GTCAT		1							1
CCGCAG		1							1
CGACTT	1								1
CGGCAA	1								1
CTGGCG	1								1
CTGTTG	1								1
GCCAGC	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG/CG	-	-	-	6					6
AGC/CTG	-	-	1					1	2
CCG/CGG	-	-	6	2					8
AAAT/ATTT	-	1							1
ACATG/ATGTC		1							1
AGCGC/CGCTG	1								1
CCGCG/CGCGG	3								3
AACAGC/CTGTTG	1								1
AACGGC/CCGTTG	1								1
AAGTCG/ACTTCG	1								1
AGCCGC/CGGCTG		1							1
AGCGCC/CGCTGG	2								2
