Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-22/megassr/results/hub_GCA_006521335.1/fasta/hub_GCA_006521335.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              41
Total size of examined sequences (bp):           4517125
Total number of identified SSRs:                 27
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	10
3	7
5	5
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
AT	-	-	-	1				1
CG	-	-	-	5		1		6
GC	-	-	-	2			1	3
AGC	-	-	1					1
CCG	-	-	2					2
CTG	-	-			1			1
GCC	-	-	1					1
GCG	-	-	2					2
CGCGC	2							2
GCGCA	1							1
GGCGC	1							1
GGCGT	1							1
CACGAC						1		1
CGACTT	1							1
CTCCGC	1							1
CTGGCG	1							1
GCCAGC	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AT/AT	-	-	-	1				1
CG/CG	-	-	-	7		1	1	9
AGC/CTG	-	-	1		1			2
CCG/CGG	-	-	5					5
ACGCC/CGTGG	1							1
AGCGC/CGCTG	1							1
CCGCG/CGCGG	3							3
AAGTCG/ACTTCG	1							1
ACCACG/CGTGGT						1		1
AGCGCC/CGCTGG	2							2
AGGCGG/CCGCCT	1							1
