Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-19/megassr/results/hub_GCA_006396535.1/fasta/hub_GCA_006396535.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              58
Total size of examined sequences (bp):           5000398
Total number of identified SSRs:                 29
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	10
4	2
5	3
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AT	-	-	-	1					1
CG	-	-	-	3					3
GC	-	-	-	2					2
CCG	-	-	2						2
CTG	-	-					1		1
GCC	-	-	1						1
GCG	-	-	2						2
GCT	-	-	2						2
GGT	-	-	1						1
TGG	-	-	1						1
CTGT	-							1	1
GCCA	-	1							1
CGCGC	1								1
GGCGC	1								1
TTATG	1								1
AGCCAG	1								1
CAACCA	1								1
CCGGAG		1							1
CGACTT	1								1
CTGGCG	1								1
GCCAGC	1								1
TGGTCG								1	1
TTTTTA	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AT/AT	-	-	-	1					1
CG/CG	-	-	-	5					5
ACC/GGT	-	-	2						2
AGC/CTG	-	-	2				1		3
CCG/CGG	-	-	5						5
ACAG/CTGT	-							1	1
AGCC/CTGG	-	1							1
AACAT/ATGTT	1								1
CCGCG/CGCGG	2								2
AAAAAT/ATTTTT	1								1
AACCAC/GGTTGT	1								1
AAGTCG/ACTTCG	1								1
ACCACG/CGTGGT								1	1
AGAGCC/CTCTGG	1								1
AGCCGG/CCGGCT		1							1
AGCGCC/CGCTGG	2								2
