Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-18/megassr/results/hub_GCA_006336345.1/fasta/hub_GCA_006336345.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              38
Total size of examined sequences (bp):           4687751
Total number of identified SSRs:                 25
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	9
4	2
5	3
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	4		1	5
GC	-	-	-	1			1
CCG	-	-	3				3
CGC	-	-	1				1
CGG	-	-	1				1
CTG	-	-	1			1	2
GCG	-	-			1		1
GCT	-	-	1				1
GCCA	-	1					1
TAAA	-	1					1
CGCGC	1						1
CGCGG	1						1
GGCGC	1						1
CCATCA	1						1
CCATGA	1						1
CGACTT	1						1
CTGGCG	1						1
TTGTTC	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	5		1	6
AGC/CTG	-	-	2			1	3
CCG/CGG	-	-	5		1		6
AAAT/ATTT	-	1					1
AGCC/CTGG	-	1					1
CCGCG/CGCGG	3						3
AACAAG/CTTGTT	1						1
AAGTCG/ACTTCG	1						1
ACCATC/ATGGTG	1						1
ACCATG/ATGGTC	1						1
AGCGCC/CGCTGG	1						1
