Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-16/megassr/results/hub_GCA_004745875.1/fasta/hub_GCA_004745875.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              3592
Total size of examined sequences (bp):           4536152
Total number of identified SSRs:                 53
Number of SSR containing sequences:              48
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    5


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	23
2	9
3	9
5	8
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	1	1		1	2	1				1							1	1			1																																				1	13
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2		2					1		1			2								1							1																															10
CG	-	-	-	5	1																																																																							6
GC	-	-	-	3																																																																								3
AGC	-	-	1																																																																									1
ATA	-	-	1																																																																									1
CCG	-	-	1	1																																																																								2
CGC	-	-	2																																																																									2
CGG	-	-	1																																																																									1
CTG	-	-				1																																																																						1
GCC	-	-	1																																																																									1
CCCCG	1																																																																											1
CCGCG	1																																																																											1
CGCGC	1																																																																											1
CGCTG	1																																																																											1
GCCCG	1																																																																											1
GCGCG	1																																																																											1
GCGGC	1																																																																											1
GGCGG	1																																																																											1
CGACTT	1																																																																											1
CGTGGT			1																																																																									1
CTGGCG	1																																																																											1
GCTGGC	1																																																																											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4	1	3		1	2	1	1		1	1		2					1	1		1	1						1																														1	23
CG/CG	-	-	-	8	1																																																																							9
AAT/ATT	-	-	1																																																																									1
AGC/CTG	-	-	1			1																																																																						2
CCG/CGG	-	-	5	1																																																																								6
AGCGC/CGCTG	1																																																																											1
CCCCG/CGGGG	2																																																																											2
CCCGG/CCGGG	1																																																																											1
CCGCG/CGCGG	4																																																																											4
AAGTCG/ACTTCG	1																																																																											1
ACCACG/CGTGGT			1																																																																									1
AGCGCC/CGCTGG	2																																																																											2
