Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-15/megassr/results/hub_GCA_004745515.1/fasta/hub_GCA_004745515.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2112
Total size of examined sequences (bp):           4611182
Total number of identified SSRs:                 39
Number of SSR containing sequences:              35
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    4


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	14
2	7
3	9
5	6
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	3	1			1				1																							9
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1				1										1																1	5
CG	-	-	-	5																																														5
GC	-	-	-	1				1																																										2
AGC	-	-	1																																															1
ATA	-	-	1																																															1
CCG	-	-	3																																															3
CGC	-	-	1																																															1
CGG	-	-	1	1																																														2
GCC	-	-	1																																															1
CCCCG	2																																																	2
CGCCG	1																																																	1
CGCGC	2																																																	2
GGCAG	1																																																	1
CGACCA				1																																														1
CTGGCG	1																																																	1
GCCAGC	1																																																	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4	4	1			2				1						1																1	14
CG/CG	-	-	-	6				1																																										7
AAT/ATT	-	-	1																																															1
AGC/CTG	-	-	1																																															1
CCG/CGG	-	-	6	1																																														7
AGGGC/CCCTG	1																																																	1
CCCCG/CGGGG	2																																																	2
CCGCG/CGCGG	3																																																	3
ACCACG/CGTGGT				1																																														1
AGCGCC/CGCTGG	2																																																	2
