Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-14/megassr/results/hub_GCA_004744975.1/fasta/hub_GCA_004744975.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1755
Total size of examined sequences (bp):           4770976
Total number of identified SSRs:                 38
Number of SSR containing sequences:              36
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	11
2	6
3	7
4	1
5	6
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-						1		1		1			1					1																																								1	6
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1	1	1	1																																																					5
CG	-	-	-	4		1																																																																						5
GC	-	-	-	1																																																																								1
AGC	-	-	1																																																																									1
CCG	-	-	1																																																																									1
CGC	-	-	1																																																																									1
CGG	-	-	2																																																																									2
CTG	-	-				1																																																																						1
GCC	-	-	1																																																																									1
TAAA	-	1																																																																										1
CCCCA	1																																																																											1
CCGCG	1																																																																											1
GCCCC	1																																																																											1
GCGCC	1																																																																											1
GCGCG	1																																																																											1
GGCGG	1																																																																											1
CACGAC							1																																																																					1
CGCCAG	1																																																																											1
GAAGTC	1																																																																											1
GCCAGC	1																																																																											1
GCCCCC	1																																																																											1
GCGCTG	1																																																																											1
TGAGAT		1																																																																										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1	1	1	2		1		1			1					1																																								1	11
CG/CG	-	-	-	5		1																																																																						6
AGC/CTG	-	-	1			1																																																																						2
CCG/CGG	-	-	5																																																																									5
AAAT/ATTT	-	1																																																																										1
ACCCC/GGGGT	1																																																																											1
CCCCG/CGGGG	2																																																																											2
CCGCG/CGCGG	3																																																																											3
AAGTCG/ACTTCG	1																																																																											1
AATCTC/AGATTG		1																																																																										1
ACCACG/CGTGGT							1																																																																					1
AGCGCC/CGCTGG	3																																																																											3
CCCCCG/CGGGGG	1																																																																											1
