Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-2/megassr/results/hub_GCA_004310645.1/fasta/hub_GCA_004310645.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2600
Total size of examined sequences (bp):           6997087
Total number of identified SSRs:                 47
Number of SSR containing sequences:              41
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	7
3	24
5	4
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																								1	1
CG	-	-	-	3	1																																																					4
GC	-	-	-	1	1	1																																																				3
CAG	-	-	2																																																							2
CCG	-	-	4																																																							4
CGC	-	-	2																																																							2
CTG	-	-	2																																																							2
GCC	-	-	1																																																							1
GCG	-	-	6																																																							6
GCT	-	-	1																																																							1
GGC	-	-	3																																																							3
GGT	-	-	1																																																							1
TGC	-	-	1																																																							1
TGG	-	-	1																																																							1
CGACG	1																																																									1
CGCAG	1																																																									1
CGCTG	1																																																									1
GCCAG	1																																																									1
AACCAG	1																																																									1
ACCAGC	1																																																									1
CGACTT	1																																																									1
CGCTGG	1																																																									1
CTGGCG	1																																																									1
GCGGCA	1																																																									1
GCTCCG		1																																																								1
GCTGGC	1																																																									1
GTGGTC	1																																																									1
TCCCTC	1																																																									1
TGTTGC	1																																																									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																								1	1
CG/CG	-	-	-	4	2	1																																																				7
ACC/GGT	-	-	2																																																							2
AGC/CTG	-	-	6																																																							6
CCG/CGG	-	-	16																																																							16
ACGCG/CGCGT	1																																																									1
AGCGC/CGCTG	2																																																									2
AGGCC/CCTGG	1																																																									1
AACAGC/CTGTTG	1																																																									1
AACCAG/CTGGTT	1																																																									1
AAGTCG/ACTTCG	1																																																									1
ACCACG/CGTGGT	1																																																									1
ACCAGC/CTGGTG	1																																																									1
AGAGGG/CCCTCT	1																																																									1
AGCCGG/CCGGCT		1																																																								1
AGCGCC/CGCTGG	3																																																									3
AGCGGC/CCGCTG	1																																																									1
