Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-5/megassr/results/hub_GCA_003876625.1/fasta/hub_GCA_003876625.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              39
Total size of examined sequences (bp):           4851582
Total number of identified SSRs:                 26
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	8
5	4
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	4		1	5
GC	-	-	-	1			1
TA	-	-	-	1			1
CCG	-	-		1			1
CGC	-	-	1				1
CGG	-	-	1				1
CTG	-	-				1	1
GCC	-	-	1				1
GCG	-	-	1				1
GCT	-	-	2				2
CGCGC	1						1
CGCGG	1						1
GCGCA	1						1
GGCGC	1						1
AAATAC					1		1
CACGAC			1				1
CAGCGC	1						1
CGACTT	1						1
CTGGCG	1						1
GCCAGC	1						1
TAAAAA	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-	1			1
CG/CG	-	-	-	5		1	6
AGC/CTG	-	-	2			1	3
CCG/CGG	-	-	4	1			5
AGCGC/CGCTG	1						1
CCGCG/CGCGG	3						3
AAAAAT/ATTTTT	1						1
AAATAC/ATTTGT					1		1
AAGTCG/ACTTCG	1						1
ACCACG/CGTGGT			1				1
AGCGCC/CGCTGG	3						3
