Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-4/megassr/results/hub_GCA_003876375.1/fasta/hub_GCA_003876375.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              99
Total size of examined sequences (bp):           4511139
Total number of identified SSRs:                 23
Number of SSR containing sequences:              21
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	8
3	7
5	3
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG	-	-	-	5		1							6
GC	-	-	-	1									1
TA	-	-	-	1									1
AGC	-	-	1										1
CCG	-	-	1										1
CGG	-	-	1										1
GCA	-	-										1	1
GCC	-	-	1										1
GCG	-	-	1										1
GGC	-	-		1									1
CCCAG			1										1
CGCGG	1												1
GCGCG	1												1
CGACTT	1												1
CTGGCG	1												1
GAATAG					1								1
GCCAGC	1												1
TTTTTA	1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AT/AT	-	-	-	1									1
CG/CG	-	-	-	6		1							7
AGC/CTG	-	-	1									1	2
CCG/CGG	-	-	4	1									5
AGCCC/CTGGG			1										1
CCGCG/CGCGG	2												2
AAAAAT/ATTTTT	1												1
AAGTCG/ACTTCG	1												1
AATAGG/ATTCCT					1								1
AGCGCC/CGCTGG	2												2
