Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_003730215.1/fasta/hub_GCA_003730215.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              56
Total size of examined sequences (bp):           33453722
Total number of identified SSRs:                 18481
Number of SSR containing sequences:              56
Number of sequences containing more than 1 SSR:  56
Number of SSRs present in compound formation:    3739


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	14
2	12132
3	2334
4	838
5	830
6	2333

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	1	1	1	1																													6
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	2		1																1														7
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1																																1
AC	-	-	-	397	391	332	258	147	112	84	59	40	22	16	11	14	14	7	4	3	3	3	1	1	2	2	1	1		1																					1926
AG	-	-	-	295	173	35	12	3																																											518
AT	-	-	-	160	185	209	138	85	32	21	4	3	1	1	1				1																																841
CA	-	-	-	849	491	372	313	197	137	122	58	49	28	21	16	13	6	8	6	1	2	2	2	1	1	1													1												2697
CG	-	-	-	70	12	3																																													85
CT	-	-	-	307	172	40	5	3																																											527
GA	-	-	-	245	150	59	25	1	1		1																																								482
GC	-	-	-	60	4		1																																												65
GT	-	-	-	476	454	387	215	158	95	70	52	38	24	22	11	6	7	7	1	3		2		1	1				1	1																					2032
TA	-	-	-	101	123	141	88	36	14	4	4	1	1																																						513
TC	-	-	-	269	130	44	21	5	4	1																																									474
TG	-	-	-	434	404	362	264	176	107	59	53	24	30	15	9	9	5	3	4	2	5	2	3		1								1																		1972
AAC	-	-	4	2																																															6
AAG	-	-	3																																																3
AAT	-	-	7																																																7
ACA	-	-	2	1																																															3
ACC	-	-	31	7	2	3																			1																										44
ACG	-	-	8	2																																															10
ACT	-	-	1																																																1
AGA	-	-	1																																																1
AGC	-	-	58	25	12	5	2	2		1																																									105
AGG	-	-	20	5	4	2																																													31
AGT	-	-	1																																																1
ATA	-	-	4	1		1																																													6
ATC	-	-	2		1																																														3
ATG	-	-	1																																																1
ATT	-	-	1																																																1
CAA	-	-	3	1																																															4
CAC	-	-	51	30	4	3	2	1																																											91
CAG	-	-	71	53	15	5	3	3																																											150
CAT	-	-	2	1																																															3
CCA	-	-	73	26	9	3																																													111
CCG	-	-	38	14	2	2	1																																												57
CCT	-	-	41	25	10	7	2					1																																							86
CGA	-	-	19	5	5																																														29
CGC	-	-	44	10	8	1		1																																											64
CGG	-	-	40	11		1	1	1																																											54
CGT	-	-	16	2	1	2																																													21
CTC	-	-	13	8	3	1	1																																												26
CTG	-	-	71	46	17	9			1																																										144
GAC	-	-	10	2	2																																														14
GAG	-	-	34	10	1	4		1																																											50
GAT	-	-	3	1																																															4
GCA	-	-	83	54	17	7	3	1				1																																							166
GCC	-	-	44	10	4																																														58
GCG	-	-	44	17				1																																											62
GCT	-	-	108	49	20	11	8	1																																											197
GGA	-	-	35	10	6	5																																													56
GGC	-	-	49	16	9	3				1																																									78
GGT	-	-	76	38	11	5	2																																												132
GTC	-	-	9	4																																															13
GTG	-	-	45	16	10	5	2	1																																											79
GTT	-	-	3																																																3
TAA	-	-	2																																																2
TAC	-	-		1																																															1
TAG	-	-	1																																																1
TAT	-	-	1		1																																														2
TCA	-	-	1		1																																														2
TCC	-	-	20	1	2																																														23
TCG	-	-	12	5	2	1																																													20
TCT	-	-	1																																																1
TGA	-	-	1	1																																															2
TGC	-	-	124	45	35	8	3	2		1																																									218
TGG	-	-	37	16	8	1				1																																									63
TGT	-	-	5		2																																														7
TTA	-	-	5	3		1																																													9
TTG	-	-	6	1					1																																										8
AAAC	-	3																																																	3
AAAT	-	1																																																	1
AACA	-	2																																																	2
AACC	-	1																																																	1
AAGC	-		1	1																																															2
AAGG	-	1																																																	1
ACAG	-	7	3	1																																															11
ACAT	-		2																																																2
ACCA	-	1																																																	1
ACCC	-	4	3	2																																															9
ACGC	-	7	1					1																																											9
AGAC	-	6	1																																																7
AGCA	-	2																																																	2
AGCG	-	1																																																	1
AGGA	-	2	1																																																3
AGGC	-	1																																																	1
AGGG	-	14	1																																																15
AGGT	-	1																																																	1
ATAC	-	3																																																	3
ATAG	-	1																																																	1
ATGG	-	7	7																																																14
ATGT	-	3	1																																																4
ATTT	-	1																																																	1
CAAA	-	1																																																	1
CAAC	-	1	1																																																2
CAAG	-	2																																																	2
CACC	-	11	1	3																																															15
CACG	-	26	2		2			1																																											31
CACT	-	2																																																	2
CAGA	-	5	1																																																6
CAGC	-	2																																																	2
CAGG	-	4																																																	4
CATC	-	1																																																	1
CATG	-	5																																																	5
CCAC	-	14	1																																																15
CCAT	-	1																																																	1
CCCA	-	22	5	3																																															30
CCCG	-	1																																																	1
CCCT	-	40	17	6	1		1																																												65
CCGC	-	3																																																	3
CCGT	-	2	1	1																																															4
CCTA	-	1																																																	1
CCTC	-	22	9	3																																															34
CCTG	-	1	1																																																2
CCTT	-	1		1																																															2
CGAG	-	3																																																	3
CGCA	-	18	4																																																22
CGCC	-	4																																																	4
CGGC	-	1																																																	1
CGTC	-		1																																																1
CGTG	-	8		1																																															9
CTAT	-	1																																																	1
CTCC	-	22	6	3		1																																													32
CTCG	-	4	1																																																5
CTGC	-	2	1		1	1																																													5
CTGT	-	3	2																																																5
CTTC	-	1																																																	1
CTTG	-	2																																																	2
GAAG	-	1																																																	1
GACA	-		2			1																																													3
GACC	-	2																																																	2
GACG	-				1																																														1
GAGC	-	2	2																																																4
GAGG	-	32	7	1	2																																														42
GAGT	-	1	1																																																2
GATG	-	2																																																	2
GCAC	-	12	1						1							1																																			15
GCAG	-	1	2																																																3
GCAT	-	1	1																																																2
GCCC	-	2																																																	2
GCCG	-	1																																																	1
GCCT	-	2	1	1																																															4
GCGA	-	3																																																	3
GCGG	-	1																																																	1
GCGT	-	11	3	1																																															15
GCTC	-		1																																																1
GCTT	-	2																																																	2
GGAA	-	2		2																																															4
GGAG	-	25	8	3	2				1																																										39
GGAT	-	4																																																	4
GGCA	-	3	1					1																																											5
GGCG	-	3																																																	3
GGCT	-	1																																																	1
GGGA	-	33	15	4	3					1																																									56
GGGC	-	4																																																	4
GGGT	-	18	5																																																23
GGTG	-	8				1																																													9
GTAT	-	2																																																	2
GTCG	-	3																																																	3
GTCT	-	7																																																	7
GTGA	-	1																																																	1
GTGC	-	17	2		1																																														20
GTGG	-	17	9	3				1																																											30
GTTT	-	1																																																	1
TATC	-	1																																																	1
TATG	-	3																																																	3
TATT	-		1																																																1
TCCC	-	12		1	1																																														14
TCCG	-		1																																																1
TCCT	-	1	2																																																3
TCGC	-	3																																																	3
TCGG	-	1																																																	1
TCTA	-	1																																																	1
TCTG	-	6																																																	6
TGAG	-	1																																																	1
TGCC	-	2				1									1																																				4
TGCG	-	36	3																																																39
TGCT	-	2																																																	2
TGGA	-	2																																																	2
TGGG	-	4	3																																																7
TGTA	-	1																																																	1
TGTC	-	3																																																	3
TGTT	-	3																																																	3
TTGC	-	2																																																	2
TTGG	-		1																																																1
TTGT	-	1	1																																																2
TTTA	-	1																																																	1
TTTC	-	1																																																	1
TTTG	-	2																																																	2
AAAAC	12																																																		12
AAAAT	2	1																																																	3
AAACA	5																																																		5
AAAGA	2																																																		2
AAAGG	3																																																		3
AAATA	1																																																		1
AACAA	2																																																		2
AAGAG	2																																																		2
AAGCA	1																																																		1
AAGGA	2																																																		2
AAGGG	4																																																		4
AATAT	1																																																		1
AATTG	1																																																		1
ACAAA	2																																																		2
ACAAC	1																																																		1
ACACA	1																																																		1
ACACG	1																																																		1
ACAGA	1																																																		1
ACAGC	1																																																		1
ACCAC	1																																																		1
ACCCA	1																																																		1
ACCCC	6																																																		6
ACCTC		1																																																	1
AGAAG	1	1																																																	2
AGACG		1																																																	1
AGAGA	2																																																		2
AGAGC	2	1																																																	3
AGAGG	5	1																																																	6
AGCAC	2																																																		2
AGCAG	1																																																		1
AGCCA	1																																																		1
AGCCC	1																																																		1
AGCTC	1																																																		1
AGGAA	1																																																		1
AGGGA	9	1		1																																															11
AGGGC	1																																																		1
AGGGG	12	2	1																																																15
AGGTG	1																																																		1
ATAAA	1																																																		1
ATATA	1																																																		1
ATATT				1																																															1
ATTAT	2																																																		2
ATTGC	1																																																		1
CAAAA	3																																																		3
CAAAG	11																																																		11
CAAGA	1																																																		1
CAAGG	1																																																		1
CACAC	4																																																		4
CACAG	2																																																		2
CACCA	1																																																		1
CACCC	7																																																		7
CACCG		1																																																	1
CACCT	9																																																		9
CACGA	1																																																		1
CACGC	2																																																		2
CACGG	1																																																		1
CACTG		1																																																	1
CACTT	1																																																		1
CCACA	3																																																		3
CCACC	6	2																																																	8
CCACG	2																																																		2
CCACT	1																																																		1
CCAGC	2																																																		2
CCATC	2																																																		2
CCCAC	7	3																																																	10
CCCAT	1	1																																																	2
CCCCA	18	2																																																	20
CCCCG	4																																																		4
CCCCT	30	6	1	1																																															38
CCCGC	2																																																		2
CCCTC	12	2																																																	14
CCCTG	2		2																																																4
CCCTT	6	3																																																	9
CCGAG	1																																																		1
CCGCA	1																																																		1
CCGCC	5																																																		5
CCTAA	3																																																		3
CCTCA	3																																																		3
CCTCC	9	4																																																	13
CCTCT	13	2																																																	15
CCTGC	1																																																		1
CCTTC	5																																																		5
CCTTG	1																																																		1
CCTTT	1																																																		1
CGAAA	1																																																		1
CGAAG	1																																																		1
CGAGA	1																																																		1
CGCAA	1																																																		1
CGCAC		1																																																	1
CGCAG	4																																																		4
CGCAT	1																																																		1
CGCCC	2	1																																																	3
CGCCG	2																																																		2
CGCGA	1																																																		1
CGCTC	1																																																		1
CGCTG	3																																																		3
CGGCA	3																																																		3
CGGCC	3																																																		3
CGGCG	1																																																		1
CGTCT	1			1																																															2
CTCCC	9	1	1	1																																															12
CTCCT	4	1																																																	5
CTCGT	2																																																		2
CTCTC	5	1	1	1																																															8
CTCTG	3																																																		3
CTCTT		1																																																	1
CTGCA	1																																																		1
CTGCT	3																																																		3
CTGTA	1																																																		1
CTGTG	1																																																		1
CTTCG	1																																																		1
CTTGC	1																																																		1
CTTGG	1																																																		1
CTTTC	3																																																		3
GAAAG	2																																																		2
GAAGC	1																																																		1
GAAGG	3	1																																																	4
GACGT	1																																																		1
GAGAG	10																																																		10
GAGCC	1																																																		1
GAGCT	2																																																		2
GAGGA	5	1																																																	6
GAGGC	2																																																		2
GAGGG	21	5																																																	26
GAGGT	3	1																																																	4
GATGG	1		1																																																2
GCAAC	1																																																		1
GCACA	1																1																																		2
GCACC	1																																																		1
GCAGA	2																																																		2
GCAGC	3																																																		3
GCAGT	1																																																		1
GCATC	1																																																		1
GCCAT	1																																																		1
GCCCC	4																																																		4
GCCCT	1																																																		1
GCCGC	3																																																		3
GCCGG	1																																																		1
GCCGT	1																																																		1
GCCTC	2																																																		2
GCGAA	1																																																		1
GCGAC	1																																																		1
GCGAG		1																																																	1
GCGCA	1																																																		1
GCGCC	1																																																		1
GCGCT	1																																																		1
GCGGC	2																																																		2
GCGTC	1																																																		1
GCGTG	1																																																		1
GCTCT	2																																																		2
GCTGC	2																																																		2
GCTGT	1																																																		1
GCTTG	1																																																		1
GGAAA	3																																																		3
GGAAG	2																																																		2
GGACA	1																																																		1
GGAGA	2		1																																																3
GGAGG	25	3	2	1																																															31
GGAGT	1																																																		1
GGATA	1																																																		1
GGATG	1																																																		1
GGCAG	1																																																		1
GGCCC	1																																																		1
GGCGC	2																																																		2
GGCGG		1																																																	1
GGCGT	1																																																		1
GGCTC	1																																																		1
GGGAA	1	1																																																	2
GGGAG	25	2	1																																																28
GGGAT	1	1																																																	2
GGGCG	3	1																																																	4
GGGCT	2																																																		2
GGGGA	31	6	4	1																																															42
GGGGC	5																																																		5
GGGGT	23	2		1																																															26
GGGTG	8																																																		8
GGTGA	2																																																		2
GGTGG	3																																																		3
GGTGT	1																																																		1
GGTTA	5	1																																																	6
GGTTT	1																																																		1
GTAGG	1																																																		1
GTCGC	1																																																		1
GTGAG	1																																																		1
GTGGA	2																																																		2
GTGGC	3																																																		3
GTGGG	5	1																																																	6
GTGGT	2																																																		2
GTGTG	1																																																		1
GTTGC	1																																																		1
GTTGT	1																																																		1
GTTTT	3																																																		3
TACTC		1																																																	1
TAGCA	1																																																		1
TAGGG	3																																																		3
TATAT	2	4				1			1				1			1			1																																11
TATTA	1																																																		1
TATTT	1																																																		1
TCACC	1																																																		1
TCAGC	1																																																		1
TCCCC	16	1	1																																																18
TCCCT	3	2	1																																																6
TCCGC	1																																																		1
TCCTT		1																																																	1
TCGCC	3																																																		3
TCGTT	1																																																		1
TCTCC	3																																																		3
TCTCT	3																																																		3
TCTGC	1																																																		1
TCTTT	3																																																		3
TGAAG	1																																																		1
TGCAC	1																																																		1
TGCCA	2																																																		2
TGCCG	2																																																		2
TGCCT	1																																																		1
TGCGC	1																																																		1
TGCGG	1																																																		1
TGCTC			1																																																1
TGCTG	3																																																		3
TGGCG	1																																																		1
TGGGA	1																																																		1
TGGGG	7	1																																																	8
TGGTG	3																																																		3
TGGTT	1																																																		1
TGTCT	1																																																		1
TGTGT	3																																																		3
TGTTG	1																																																		1
TGTTT	5																																																		5
TTATA	1																																																		1
TTCCC		1						1																																											2
TTCCT	2																																																		2
TTGTG	1																																																		1
TTGTT	4																																																		4
TTTCC	1																																																		1
TTTGC	1																																																		1
TTTGT	6																																																		6
TTTTA	1																																																		1
TTTTC	4																																																		4
TTTTG	7																																																		7
AAAAAC	2																																																		2
AAACAA	1																																																		1
AAACAC	1																																																		1
AACAGC	1																																																		1
AACATG	1																																																		1
AACCAC	1																																																		1
AACCCT	32	80	235	100	16	6	3	1	1	1			1										1		1																										478
AAGAAA	1																																																		1
AAGGGA	1																																																		1
AATATA	1																																																		1
ACAAAC	1																																																		1
ACACAA	3																																																		3
ACACAG	4	5																																																	9
ACACAT	3	1																																																	4
ACACCA	1																																																		1
ACACGC	25	1																																																	26
ACACGT		1																																																	1
ACATAT		1																																																	1
ACCCAC		1																																																	1
ACCCGC	1																																																		1
ACCCTA	8	6	9	1	3					1																																									28
ACCCTC	1				1																																														2
ACCGCC	2																																																		2
ACGACA	1																																																		1
ACGCAC	7	2		1		1																																													11
ACGCAG	1																																																		1
ACGCCG	1																																																		1
ACGGCG	1																																																		1
ACTTCG	1																																																		1
AGAAAA	1																																																		1
AGAAGG	1																																																		1
AGACAC	3																																																		3
AGACAG	2																																																		2
AGAGAC	2																																																		2
AGAGCG	3																																																		3
AGAGGA	1																																																		1
AGAGGG	4																																																		4
AGCACC	1																																																		1
AGCCGG	1																																																		1
AGCGAG	2	1																																																	3
AGCGCG	1																																																		1
AGCGGC	3																																																		3
AGCGTC	1																																																		1
AGGAAC	1																																																		1
AGGAAG	2																																																		2
AGGACG	1																																																		1
AGGCAG	2																																																		2
AGGCTG		1																																																	1
AGGGAG	3																																																		3
AGGGGA	1																																																		1
AGGGGG	4																																																		4
AGGGTG	4	1						1						1	1						1																														9
AGGGTT	31	47	54	13	16	2	4	4	1	2								2																																	176
AGGTGA	1																																																		1
AGTCGC	1																																																		1
AGTGAG	1																																																		1
AGTGGC		1																																																	1
ATACAT	8		1																																																9
ATATAC	3																																																		3
ATATCT	1																																																		1
ATATGT	1																																																		1
ATGTAT	3																																																		3
ATGTGC	1																																																		1
ATGTGT	4																																																		4
ATTTAA	2																																																		2
ATTTTT	1																																																		1
CAAAAA	2																																																		2
CAAGGC	1																																																		1
CACACC	6		3																																																9
CACACG	27	13	3	1	1	1																																													46
CACAGA	2																																																		2
CACAGG	1		1																																																2
CACATA	2																																																		2
CACATC	1																																																		1
CACATG	3	1																																																	4
CACCAG	1																																																		1
CACCAT	2																																																		2
CACCCA	3			1																																															4
CACCCC	2																																																		2
CACCGC	4		1																																																5
CACCGG	1																																																		1
CACGCA	9	1	1	1	1									1																																					14
CACGCG	2																																																		2
CACGTA	1																																																		1
CACTGC	1																																																		1
CAGACA	2																																																		2
CAGCAA	2																																																		2
CAGCAC	1																																																		1
CAGCCG	1	1																																																	2
CAGCGG	4																																																		4
CAGGAG	1																																																		1
CATATA	1	1																																																	2
CATCAC	1																																																		1
CATCCT	1																																																		1
CATCTC	1																																																		1
CATTCG	1																																																		1
CCACAC	1																																																		1
CCACCC	1																																																		1
CCACCG	3																																																		3
CCACGC	1																																																		1
CCACTA		1																																																	1
CCACTT	1																																																		1
CCATCA	1																																																		1
CCATCC	1																																																		1
CCATCT	1																																																		1
CCCACA	1	1																																																	2
CCCCAC	2																																																		2
CCCCAG	1																																																		1
CCCCCA	2																																																		2
CCCCCT	9																																																		9
CCCCGC	1																																																		1
CCCCTC	4	1																																																	5
CCCCTG	1																																																		1
CCCCTT	2	1																																																	3
CCCGCA	12																																																		12
CCCTAA	3	2	2	3	2		1																																												13
CCCTCC	5																																																		5
CCCTCG		1																																																	1
CCCTCT	5	2											1																																						8
CCCTTC	2																																																		2
CCGACA	1																																																		1
CCGCAC	12																																																		12
CCGCAG	1																																																		1
CCGCCA	7		1																																																8
CCGCCT	2	1	1																																																4
CCGCTG	1	1																																																	2
CCGGCA	1																																																		1
CCTAAC	12	14	8	5	3	1	1		1			1																																							46
CCTCCC	6																																																		6
CCTCTC	2	1	1																																															1	5
CCTCTT	1																																																		1
CCTGCA	1																																																		1
CCTTCC	1																																																		1
CGAACA	1																																																		1
CGACAG	1																																																		1
CGACGG	1																																																		1
CGAGGA	3																																																		3
CGAGGC	4																																																		4
CGCACA	10	1	2									1																																							14
CGCACG	1																																																		1
CGCAGC	5																																																		5
CGCCAC	1																																																		1
CGCCCA	1																																																		1
CGCCGA	1																																																		1
CGCCGG	2																																																		2
CGCCGT	2																																																		2
CGCCTC	1	1																																																	2
CGCCTG	4																																																		4
CGCGCA	1																																																		1
CGCTCG	1																																																		1
CGCTGC	2																																																		2
CGGCCA	1																																																		1
CGGCGA	2																																																		2
CGGCGC	4																																																		4
CGGCGT	1																																																		1
CGGCTG	1	1																																																	2
CGGCTT	1																																																		1
CGGTGC	1																																																		1
CGGTGG		1																																																	1
CGTCAT		1																																																	1
CGTCGC	1																																																		1
CGTCGG	1																																																		1
CGTGGC	1																																																		1
CGTGTG	3																																																		3
CTAACC	1	2	3		1																																														7
CTACAG		1																																																	1
CTCCCC	8																																																		8
CTCCCT	2																																																		2
CTCCGT	1																																																		1
CTCGAG	1																																																		1
CTCGCG	1																																																		1
CTCGCT	1																																																		1
CTCGTC	2		1																																																3
CTCTCC	8																																																		8
CTCTCG	1																																																		1
CTCTGC	1																																																		1
CTCTGT	2																																																		2
CTGCCG	1																																																		1
CTGCCT	1																																																		1
CTGCGT	1																																																		1
CTGTCT	1																																																		1
CTGTGT	1																																																		1
CTTCCC	1																																																		1
CTTCCT	1																																																		1
CTTGTG	1																																																		1
GAAGAG	4																																																		4
GACACA	1																																																		1
GACAGC	1																																																		1
GACGCC	1																																																		1
GAGAAA	1																																																		1
GAGAGC	5																																																		5
GAGAGG	6	4	1																																																11
GAGAGT	1																																																		1
GAGCGA	1																																																		1
GAGCGC	1																																																		1
GAGGAA	1																																																		1
GAGGAC	5																																																		5
GAGGCG		1																																																	1
GAGGGA	5																																																		5
GAGGGC	1																																																		1
GAGGGG	3	1																																																	4
GAGGGT	2								1																																										3
GAGTGG		1																																																	1
GAGTGT	1																																																		1
GATCGC	1																																																		1
GCACAA	1																																																		1
GCACAC	6	1																																																	7
GCACCT	1																																																		1
GCAGCC	2																																																		2
GCAGCG	2																																																		2
GCAGCT	1																																																		1
GCAGGA	1																																																		1
GCAGGC	1																																																		1
GCAGTC	1																																																		1
GCCACC	2	1																																																	3
GCCACT	1																																																		1
GCCCTT	1																																																		1
GCCGCT	12	1																																																	13
GCCGGC	1																																																		1
GCCGTC	2																																																		2
GCCTCA	1				1																																														2
GCCTCC	1																																																		1
GCCTCT		1																																																	1
GCCTGT	1																																																		1
GCGACG	1	1																																																	2
GCGAGA	2																																																		2
GCGCCA	1																																																		1
GCGCCT	1																																																		1
GCGCGT	1																																																		1
GCGGAC	1																																																		1
GCGGAG	1																																																		1
GCGGCA	3																																																		3
GCGGCC	1																																																		1
GCGGTG	3																																																		3
GCGTCG	1																																																		1
GCGTGA	1																																																		1
GCGTGC	1																																																		1
GCGTGT	6	1	1		1																																														9
GCGTTG		1																																																	1
GCTGCC	4	1																																																	5
GCTGCG	4	1																																																	5
GGAAAA	1																																																		1
GGAAGG	1																																																		1
GGACGA	2																																																		2
GGAGAC		1																																																	1
GGAGAG	4																																																		4
GGAGCA	1																																																		1
GGAGCG	1																																																		1
GGAGGC	2	1																																																	3
GGAGGG	4																																																		4
GGAGGT	1																																																		1
GGATGA	1																																																		1
GGCAGC	1	1																																																	2
GGCGAC	1																																																		1
GGCGAG	2	3																																																	5
GGCGCC	1																																																		1
GGCGGA	2																																																		2
GGCGGT	4		1																																																5
GGCTGC	3																																																		3
GGGAGA	3	1																																																	4
GGGAGG	4																																																		4
GGGCGA	1																																																		1
GGGGAA	3																																																		3
GGGGAG	9	2																																																	11
GGGGCG	1																																																		1
GGGGGA	11	1																																																	12
GGGGGT	2																																																		2
GGGGTG	2																																																		2
GGGTGA	1		1																																																2
GGGTGG	2																																																		2
GGGTGT		1																																																	1
GGGTTA	18	9	9	3	5			1	1	1	1							1										1																							50
GGTGAG	1		1																																																2
GGTGCA	1																																																		1
GGTGCC	1																																																		1
GGTGCT	5																																																		5
GGTGGC	4																																																		4
GGTGGG	3																																																		3
GGTTAG	42	66	92	82	29	6	10	3	2		3	2	1	1			1	1	1							1					1																				344
GTAAGG	1																																																		1
GTATAT	1																																																		1
GTATGC	1																																																		1
GTATGT		1																																																	1
GTCGCG	1																																																		1
GTCGGT	1																																																		1
GTCGTG	1																																																		1
GTCTGT	2																																																		2
GTGCAT	3																																																		3
GTGCCC	1																																																		1
GTGCGC	2																																																		2
GTGCGG	73																																																		73
GTGCGT	12	2	1		1	1																																													17
GTGCTC	1																																																		1
GTGCTG	1																																																		1
GTGGAG	2																																																		2
GTGGCC	2																																																		2
GTGGCG	1	1																																																	2
GTGGGC		1																																																	1
GTGGGG	2																																																		2
GTGGGT	2				1																																														3
GTGGTC	5																																																		5
GTGGTT	1																																																		1
GTGTAT	4																																																		4
GTGTGC	20	4	12						1																																										37
GTGTGG	6	3	2		1																																														12
GTGTTG	1																																																		1
GTTAGG	3	3	3	1														1																																	11
GTTGTC	1																																																		1
TAACCC	2	1	1							1																																									5
TACACA	2																																																		2
TACGTG	1																																																		1
TACTCG	1																																																		1
TAGGGT	25	21	17	10	4	4	4	1	1						1																																				88
TAGTGG	1																																																		1
TATGCA		1																																																	1
TATGTG	4		1																																																5
TATTTT	1																																																		1
TCACCG	1																																																		1
TCATCG		1																																																	1
TCCCCC	2	1																																																	3
TCCCCT	1																																																		1
TCCGCA		5	2	6																																															13
TCCTCG	2																																																		2
TCGAGC	1																																																		1
TCGCAG	1																																																		1
TCGCCC	1																																																		1
TCGCCG	1																																																		1
TCGGCA	1																																																		1
TCGTCC	1																																																		1
TCTCCC	4																																																		4
TCTCCG	1																																																		1
TCTCTG	1																																																		1
TCTGTG	3		1																																																4
TCTTCC	1																																																		1
TGCACG	11																																																		11
TGCACT	1																																																		1
TGCATG	1																																																		1
TGCCGC		1																																																	1
TGCCTC	1																																																		1
TGCCTG	1																																																		1
TGCGCG	1																																																		1
TGCGGG	7																																																		7
TGCGTC	1																																																		1
TGCGTG	16	3																																																	19
TGCTGG	2																																																		2
TGCTGT	1																																																		1
TGGCGG	1																																																		1
TGGCTG	4	7																																																	11
TGGGAC	1																																																		1
TGGGCT	1																																																		1
TGGGTG	1																																																		1
TGTACG	1																																																		1
TGTCGC	1																																																		1
TGTCTG	1																																																		1
TGTGCA	1	1																																																	2
TGTGCC	1			1																																															2
TGTGCG	9	1									1																																								11
TGTGCT	1																																																		1
TGTGGG	2																																																		2
TGTGTA	4																																																		4
TGTGTC	4																																																		4
TGTGTT	1																																																		1
TGTTGC	3																																																		3
TTAGGG	10	4	4	4	1		1		2	1	1	1	1																																						30
TTATTT	1																																																		1
TTCGTT	1																																																		1
TTCTTT	1																																																		1
TTGCCC	1																																																		1
TTTATT	1																																																		1
TTTCCC	1																																																		1
TTTCCT	1																																																		1
TTTGTG	1																																																		1
TTTTTA	1																																																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1																																1
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5	3	1	2	1															1														13
AC/GT	-	-	-	2156	1740	1453	1050	678	451	335	222	151	104	74	47	42	32	25	15	9	10	9	6	3	5	3	1	1	1	2			1						1												8627
AG/CT	-	-	-	1116	625	178	63	12	5	1	1																																								2001
AT/AT	-	-	-	261	308	350	226	121	46	25	8	4	2	1	1				1																																1354
CG/CG	-	-	-	130	16	3	1																																												150
AAC/GTT	-	-	23	5	2				1																																										31
AAG/CTT	-	-	5																																																5
AAT/ATT	-	-	20	4	1	2																																													27
ACC/GGT	-	-	313	133	44	20	6	2		1															1																										520
ACG/CGT	-	-	74	20	10	3																																													107
ACT/AGT	-	-	3	1																																															4
AGC/CTG	-	-	515	272	116	45	19	9	1	2		1																																							980
AGG/CCT	-	-	163	59	26	19	3	1				1																																							272
ATC/ATG	-	-	10	3	2																																														15
CCG/CGG	-	-	259	78	23	7	2	3		1																																									373
AAAC/GTTT	-	13	1																																																14
AAAG/CTTT	-	1																																																	1
AAAT/ATTT	-	3	1																																																4
AACC/GGTT	-	3	2																																																5
AAGC/CTTG	-	12	1	1																																															14
AAGG/CCTT	-	9	3	3																																															15
ACAG/CTGT	-	37	9	1		1																																													48
ACAT/ATGT	-	12	3																																																15
ACCC/GGGT	-	98	27	11		1		1																																											138
ACCG/CGGT	-	6																																																	6
ACCT/AGGT	-	2																																																	2
ACGC/CGTG	-	135	16	2	3			2	1							1																																			160
ACGG/CCGT	-	2	3	1	1																																														7
ACTC/AGTG	-	5	1																																																6
AGAT/ATCT	-	4																																																	4
AGCC/CTGG	-	3																																																	3
AGCG/CGCT	-	16	4																																																20
AGGC/CCTG	-	16	6	1	1	2		1							1																																				28
AGGG/CCCT	-	200	63	21	9	1	1		1	1																																									297
ATCC/ATGG	-	17	7																																																24
ATGC/ATGC	-	6	1																																																7
CCCG/CGGG	-	18																																																	18
CCGG/CCGG	-	2																																																	2
AAAAC/GTTTT	49																																																		49
AAAAG/CTTTT	9																																																		9
AAAAT/ATTTT	6	1																																																	7
AAACC/GGTTT	2																																																		2
AAACG/CGTTT	2																																																		2
AAAGC/CTTTG	13																																																		13
AAAGG/CCTTT	18	1																																																	19
AACAC/GTGTT	8																																																		8
AACAG/CTGTT	1																																																		1
AACCC/GGGTT	1																																																		1
AACCT/AGGTT	8	1																																																	9
AACGC/CGTTG	3																																																		3
AAGAC/CTTGT	2																																																		2
AAGAG/CTCTT	8	2																																																	10
AAGCC/CTTGG	3																																																		3
AAGCG/CGCTT	4																																																		4
AAGGC/CCTTG	4																																																		4
AAGGG/CCCTT	33	9	1	1				1																																											45
AAGTG/ACTTC	2																																																		2
AATAT/ATATT	8	4		1		1			1				1			1			1																																18
AATGC/ATTGC	1																																																		1
AATTC/AATTG	1																																																		1
ACACC/GGTGT	16																																																		16
ACACG/CGTGT	2																																																		2
ACAGC/CTGTG	11																1																																		12
ACAGG/CCTGT	1																																																		1
ACAGT/ACTGT	1																																																		1
ACCCC/GGGGT	90	11		1																																															102
ACCCT/AGGGT	4																																																		4
ACCGC/CGGTG	3	2																																																	5
ACCTC/AGGTG	20	2																																																	22
ACGAG/CGTCT	4	1		1																																															6
ACGCC/CGTGG	10																																																		10
ACGCG/CGCGT	4																																																		4
ACGGC/CCGTG	7																																																		7
ACGTC/ACGTG	1																																																		1
ACTCC/AGTGG	4																																																		4
ACTCT/AGAGT		1																																																	1
ACTGC/AGTGC	3	1																																																	4
AGAGC/CTCTG	14	1	1																																																16
AGAGG/CCTCT	47	6	2	1																																															56
AGCAT/ATGCT	1																																																		1
AGCCC/CTGGG	5																																																		5
AGCCG/CGGCT	3																																																		3
AGCGC/CGCTG	15																																																		15
AGCGG/CCGCT	2																																																		2
AGCTC/AGCTG	4																																																		4
AGGAT/ATCCT	1																																																		1
AGGCG/CCTCG	7	1																																																	8
AGGGC/CCCTG	6		2																																																8
AGGGG/CCCCT	190	32	11	4																																															237
ATCCC/ATGGG	7	2	1																																																10
ATCGC/ATGCG	2																																																		2
ATGCC/ATGGC	3																																																		3
CCCCG/CGGGG	25	3																																																	28
CCCGG/CCGGG	5																																																		5
CCGCG/CGCGG	11																																																		11
AAAAAC/GTTTTT	5																																																		5
AAAAAG/CTTTTT	3																																																		3
AAAAAT/ATTTTT	5																																																		5
AAAACG/CGTTTT	1																																																		1
AAAAGG/CCTTTT	2																																																		2
AAACAC/GTGTTT	7																																																		7
AAAGAG/CTCTTT	1																																																		1
AAAGGG/CCCTTT	2																																																		2
AAATAT/ATATTT	1																																																		1
AAATTT/AAATTT	2																																																		2
AACACC/GGTGTT	2																																																		2
AACACG/CGTGTT	1																																																		1
AACAGC/CTGTTG	7																																																		7
AACAGG/CCTGTT	1																																																		1
AACATG/ATGTTC	1																																																		1
AACCAC/GGTTGT	2																																																		2
AACCCT/AGGGTT	187	255	437	222	80	19	24	10	9	7	5	4	3	1	1		1	5	1				1		1	1		1			1																				1276
AACGAC/CGTTGT	2																																																		2
AACGCC/CGTTGG		1																																																	1
AAGAGG/CCTCTT	11																																																		11
AAGCAC/CTTGTG	3																																																		3
AAGCCC/CTTGGG	1																																																		1
AAGCCG/CGGCTT	1																																																		1
AAGGAG/CCTTCT	1																																																		1
AAGGCC/CCTTGG	1																																																		1
AAGGGC/CCCTTG	2																																																		2
AAGGGG/CCCCTT	12	1																																																	13
AAGGGT/ACCCTT	1																																																		1
AAGGTG/ACCTTC	1																																																		1
AAGTCG/ACTTCG	1																																																		1
AAGTGC/ACTTGC	1																																																		1
AAGTGG/ACTTCC	1																																																		1
AATGCG/ATTCGC	1																																																		1
ACACAG/CTGTGT	23	5	1																																																29
ACACAT/ATGTGT	23	2	1																																																26
ACACCC/GGGTGT	22	6	5	1	2																																														36
ACACCG/CGGTGT	2																																																		2
ACACGC/CGTGTG	150	30	20	3	4	3			1		1	1		1																																					214
ACACGT/ACGTGT	3	1																																																	4
ACACTC/AGTGTG	1																																																		1
ACAGAG/CTCTGT	8																																																		8
ACAGCC/CTGTGG	4	7																																																	11
ACAGCG/CGCTGT	3																																																		3
ACAGCT/AGCTGT		1																																																	1
ACAGGC/CCTGTG	4		1	1																																															6
ACATAT/ATATGT	17	2	1																																																20
ACATCC/ATGTGG	1																																																		1
ACATGC/ATGTGC	9	2																																																	11
ACCACG/CGTGGT	6																																																		6
ACCACT/AGTGGT	1	1																																																	2
ACCAGC/CTGGTG	11																																																		11
ACCATC/ATGGTG	4																																																		4
ACCCCC/GGGGGT	18																																																		18
ACCCGC/CGGGTG	105																																																		105
ACCCTC/AGGGTG	9	1	2		1			1	1					1	1						1																														18
ACCGCC/CGGTGG	32	3	3																																																38
ACCGCG/CGCGGT	1																																																		1
ACCGGC/CCGGTG	4																																																		4
ACCGTC/ACGGTG	1																																																		1
ACCTCC/AGGTGG	3																																																		3
ACCTGC/AGGTGC	3																																																		3
ACGAGC/CGTGCT	1																																																		1
ACGAGG/CCTCGT	16		1																																																17
ACGAGT/ACTCGT	1																																																		1
ACGATG/ATCGTC		2																																																	2
ACGCAG/CGTCTG	3																																																		3
ACGCAT/ATGCGT	1																																																		1
ACGCCC/CGTGGG	2	1																																																	3
ACGCCG/CGGCGT	6																																																		6
ACGCGC/CGCGTG	9																																																		9
ACGCGG/CCGCGT	1																																																		1
ACGCTC/AGCGTG	1																																																		1
ACGCTG/AGCGTC	1																																																		1
ACGGAG/CCGTCT	2	1																																																	3
ACGGCC/CCGTGG	4																																																		4
ACGGCG/CCGTCG	12	1																																																	13
ACGGGC/CCCGTG	1																																																		1
ACGTGC/ACGTGC	11																																																		11
ACTCCC/AGTGGG		1																																																	1
ACTCTC/AGAGTG	2																																																		2
ACTGCC/AGTGGC	2	1																																																	3
ACTGCG/AGTCGC	3																																																		3
ACTGGG/AGTCCC	1																																																		1
AGAGCG/CGCTCT	15	1																																																	16
AGAGGC/CCTCTG	5	1																																																	6
AGAGGG/CCCTCT	46	8	2										1																																					1	58
AGATAT/ATATCT	1																																																		1
AGATGG/ATCTCC	2																																																		2
AGCAGG/CCTGCT	3																																																		3
AGCCCC/CTGGGG	1																																																		1
AGCCGC/CGGCTG	17	3																																																	20
AGCCGG/CCGGCT	1																																																		1
AGCCTC/AGGCTG	1	1			1																																														3
AGCGCC/CGCTGG	1																																																		1
AGCGCG/CGCGCT	4																																																		4
AGCGGC/CCGCTG	33	5																																																	38
AGCGGG/CCCGCT	1																																																		1
AGCTCG/AGCTCG	2																																																		2
AGCTGC/AGCTGC	1																																																		1
AGGATG/ATCCTC	2																																																		2
AGGCCG/CCTCGG	4																																																		4
AGGCGC/CCTGCG	6																																																		6
AGGCGG/CCGCCT	9	4	1																																																14
AGGGCG/CCCTCG	5	4																																																	9
AGGGGC/CCCCTG	1																																																		1
AGGGGG/CCCCCT	69	6																																																	75
ATATGC/ATATGC		1																																																	1
ATCCCC/ATGGGG	1																																																		1
ATCCGC/ATGCGG		5	2	6																																															13
ATCGCG/ATCGCG	1																																																		1
ATCGGC/ATGCCG	1																																																		1
CCCCCG/CGGGGG	2																																																		2
CCGCGG/CCGCGG	1																																																		1
CCGGCG/CCGGCG	8																																																		8
