Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-4/megassr/results/hub_GCA_003700515.1/fasta/hub_GCA_003700515.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2303
Total size of examined sequences (bp):           5744345
Total number of identified SSRs:                 31
Number of SSR containing sequences:              29
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
5	6
6	20

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AC	-	-	-	1	1
CG	-	-	-	1	1
GC	-	-	-	3	3
CATCA	1				1
CTTGC	1				1
GCCTC	1				1
GCGCC	1				1
GTTCA	1				1
TGCTG	1				1
ATGAAT	1				1
CAGCCC	1				1
CAGCGT		1			1
CAGGAA	1				1
CAGGTG	1				1
CAGTCA	1				1
CCAGCG	1				1
CGGTAT	1				1
CGGTGT	1				1
CTTGTG	1				1
GAAGCC	1				1
GCCAGC	2				2
GCCGCA	1				1
GCCTGA	1				1
GCTCTT		1			1
GCTGGT	1				1
GGCGGT	1				1
TGCTAT	1				1
TGGCGT	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AC/GT	-	-	-	1	1
CG/CG	-	-	-	4	4
AACTG/AGTTC	1				1
AAGGC/CCTTG	1				1
ACAGC/CTGTG	1				1
ACATC/ATGTG	1				1
AGGCG/CCTCG	1				1
CCGCG/CGCGG	1				1
AACAGG/CCTGTT	1				1
AACGCC/CGTTGG	1				1
AAGAGC/CTCTTG		1			1
AAGCAC/CTTGTG	1				1
AAGCCG/CGGCTT	1				1
AATAGC/ATTGCT	1				1
AATATG/ATATTC	1				1
ACACCG/CGGTGT	1				1
ACAGTC/ACTGTG	1				1
ACCAGC/CTGGTG	1				1
ACCGAT/ATCGGT	1				1
ACCGCC/CGGTGG	1				1
ACCTGC/AGGTGC	1				1
ACGCTG/AGCGTC		1			1
AGCCCC/CTGGGG	1				1
AGCCGC/CGGCTG	1				1
AGCCTG/AGGCTC	1				1
AGCGCC/CGCTGG	3				3
