Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_003675995.1/fasta/hub_GCA_003675995.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              22758
Total size of examined sequences (bp):           180399227
Total number of identified SSRs:                 28491
Number of SSR containing sequences:              9231
Number of sequences containing more than 1 SSR:  4809
Number of SSRs present in compound formation:    2037


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	5
2	10120
3	5388
4	2998
5	8013
6	1967

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4																				4
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1																				1
AC	-	-	-	354	231	112	89	62	63	22	18	9	3	3	4	2				1																		973
AG	-	-	-	479	322	267	208	148	108	76	49	27	19	10	11	7	8	8	7	5	4	4	1	2														1770
AT	-	-	-	136	37	12	4	7																														196
CA	-	-	-	234	135	104	64	54	31	14	12	6		8		4																						666
CG	-	-	-	4																																		4
CT	-	-	-	334	257	167	132	83	65	47	30	23	11	15	4	5	3	6	5	3	1	4	2															1197
GA	-	-	-	423	241	208	161	118	88	62	45	20	15	15	11	5	4	13	5	3	4	1	1	1													1	1445
GC	-	-	-	24																																		24
GT	-	-	-	201	123	84	73	42	23	12	17	9	2	1	1	2	1	1																				592
TA	-	-	-	104	36	26	11	11	3		1	4																										196
TC	-	-	-	561	402	252	238	173	133	105	51	39	16	10	12	6	15	10	11	3	6	3	1															2047
TG	-	-	-	371	227	115	104	74	42	31	25	14	3	2	1																						1	1010
AAC	-	-	45	27	7	7	2																															88
AAG	-	-	196	61	53	24	11	1	2	5				1																								354
AAT	-	-	191	82	39	22	5	3	7	4		1	1	1				1																				357
ACA	-	-	19	22	8		2		1																													52
ACC	-	-	9	5																																		14
ACG	-	-	11	2		1	3																															17
ACT	-	-	6	3	1																																	10
AGA	-	-	166	61	42	26	16	5	1															1														318
AGC	-	-	55	20	14	7	3		1																													100
AGG	-	-	1																																			1
AGT	-	-	5	2		1																																8
ATA	-	-	109	40	19	6	4	3		1	1		1																									184
ATC	-	-	29	16	11	2	2	1					2																									63
ATG	-	-	36	10	9	5	7	1	1																													69
ATT	-	-	191	69	56	17	7	3	3			2				1																						349
CAA	-	-	62	35	8	13			1																													119
CAC	-	-	17	4																																		21
CAG	-	-	50	30	10	8	2																															100
CAT	-	-	44	16	12	6																																78
CCA	-	-	10	3	4																																	17
CCG	-	-	1		2																																	3
CCT	-	-	3	1																																		4
CGA	-	-	9	1	2																																	12
CGC	-	-	2	2																																		4
CGG	-	-	5	1			1																															7
CGT	-	-	10																																			10
CTA	-	-	4	2																																		6
CTC	-	-	7																																			7
CTG	-	-	28	12	8	3																																51
CTT	-	-	138	63	35	22	5	7	1	4														1														276
GAA	-	-	208	97	48	30	5	11	2		6														1													408
GAC	-	-	7	5	8																																	20
GAG	-	-	7	5																																		12
GAT	-	-	33	24	5	4	2							1																								69
GCA	-	-	27	23	10	12	1																															73
GCC	-	-	3	2																																		5
GCG	-	-	5	4																																		9
GCT	-	-	47	20	7	1	1		2																													78
GGA	-	-	10	8																																		18
GGC	-	-	3		2																																	5
GGT	-	-	15	8			1																															24
GTA	-	-	1	1																																		2
GTC	-	-	11	6	1	1																																19
GTG	-	-	7	2	3																																	12
GTT	-	-	31	21	9		1																															62
TAA	-	-	97	45	24	12	6	1						1																								186
TAC	-	-	7	1	1	3																																12
TAG	-	-	1	2																																		3
TAT	-	-	73	37	9	4	1	1		1	1																											127
TCA	-	-	38	10	8	4	1	2	3							2	1																					69
TCC	-	-	8	3																																		11
TCG	-	-	14	9	4	2	1		1																													31
TCT	-	-	125	47	22	13	11	5	2	1		1			1																							228
TGA	-	-	32	17	24	1	3		1																													78
TGC	-	-	70	56	13	14	2	1	1																													157
TGG	-	-	11	2	4		1																															18
TGT	-	-	59	12	10	4	2																															87
TTA	-	-	118	72	25	12	11	2	3	2								1																				246
TTC	-	-	247	101	59	38	5	7	5	2															1													465
TTG	-	-	99	40	7	6		1	2																													155
AAAC	-	38	18	7		1		3																														67
AAAG	-	42	2																																			44
AAAT	-	156	53	22		1																																232
AACA	-	16	10	3	1																																	30
AACC	-	3																																				3
AACG	-	5																																				5
AACT	-	1																																				1
AAGA	-	24	14	8	2																																	48
AAGC	-	1	1																																			2
AAGG	-	2																																				2
AAGT	-	1																																				1
AATA	-	64	25	5	5	1	2							1																								103
AATC	-	18	8	3																																		29
AATG	-	31	13	5	3																																	52
AATT	-	38	7																																			45
ACAA	-	17	3			2																																22
ACAG	-	24	9	5	3		1																															42
ACAT	-	2		2																																		4
ACCT	-	3																																				3
ACGA	-	3																																				3
ACGC	-	1																																				1
ACGT	-	1	2																																			3
ACTA	-	5																																				5
ACTC	-	8	2	1		1																																12
ACTG	-	1	2																																			3
ACTT	-	1																																				1
AGAA	-	30	9	3			2																															44
AGAC	-	5																																				5
AGAT	-	2																																				2
AGCA	-		1																																			1
AGCG	-	12	5			1																																18
AGCT	-	1																																				1
AGGA	-	1																																				1
AGGC	-	3																																				3
AGTA	-	1																																				1
AGTG	-	13	8	3	5																																	29
AGTT	-		1																																			1
ATAA	-	44	11	4	1																																	60
ATAC	-	2	1																																			3
ATCA	-	4	11	1	1						1																											18
ATCC	-		2																																			2
ATCG	-		3																																			3
ATCT	-																1																					1
ATGA	-	19	3	2																																		24
ATGG	-	2		1																																		3
ATGT	-	3	3																																			6
ATTA	-	23	4	2	2	2																																33
ATTC	-	14	7	4	3	1																																29
ATTG	-	18	5	5		1		4																														33
ATTT	-	96	39	8	2	2	1																															148
CAAA	-	27	2	1			1																															31
CAAG	-	3																																				3
CAAT	-	9	4			1																																14
CACG	-		2																																			2
CACT	-	7	2	1	1																																	11
CAGA	-	4																																				4
CAGT	-	2	2																																			4
CATA	-	1	2																																			3
CATC	-	5	3																																			8
CATT	-	25	9	2																																		36
CCAA	-	1																																				1
CCAT	-	3																																				3
CCGC	-	1																																				1
CGAA	-	1		1																																		2
CGAC	-	1																																				1
CGAG	-	12	2	2																																		16
CGAT	-	4	4	1	1																																	10
CGCT	-	9																																				9
CGTT	-	3		1																																		4
CTAA	-	3					1																															4
CTAT	-	1																																				1
CTCA	-	32	6	5	11																																	54
CTCG	-	16	12			2																																30
CTGC	-	2																																				2
CTGG	-		2																																			2
CTGT	-	2																																				2
CTTC	-	1																																				1
CTTG	-	4	2																																			6
CTTT	-	26	1																																			27
GAAA	-	48	12	6																																		66
GAAC	-	4																																				4
GAAG	-	1																																				1
GAAT	-	18	3	4	1																																	26
GACA	-	6	3	1																																		10
GAGC	-	21	5	3																																		29
GAGT	-	17	4	4	3					1																												29
GATG	-	3	2																																			5
GATT	-	5																																				5
GCAA	-	1																																				1
GCGA	-	5	2																																			7
GCTC	-	2	6	1																																		9
GCTG	-	1																																				1
GGAA	-	2																																				2
GGAT	-	3																																				3
GGTT	-	1																																				1
GTAA	-	4																																				4
GTAT	-	2	1																																			3
GTCG	-	2	1	1																																		4
GTCT	-	19	3	2	2	1				1																												28
GTGA	-	2																																				2
GTGC	-		2																																			2
GTTA	-	6																																				6
GTTC	-	2		1																																		3
GTTT	-	21	7	3		1		1																														33
TAAA	-	109	12	6	3	1																																131
TAAC	-	11	3	1																																		15
TAAG	-	3																																				3
TAAT	-	38	2																																			40
TAGC	-	1																																				1
TAGG	-	2																																				2
TAGT	-	3	1																																			4
TATC	-	1																																				1
TATG	-	1	1				1																															3
TATT	-	35	11	2																																		48
TCAA	-	17	2	5		1			1																													26
TCAC	-	3	1	2	2	1																																9
TCAT	-	18	8	6																																		32
TCCA	-	4																																				4
TCGA	-	1	1																																			2
TCGC	-	12	1	1																																		14
TCGT	-	1																																				1
TCTG	-	4	1	1																																		6
TCTT	-	19	5		3																																	27
TGAA	-	24	7	3	1	1																																36
TGAG	-	16	7	1																																		24
TGAT	-	7																																				7
TGCC	-		2																																			2
TGCT	-	2	2																																			4
TGGA	-	3																																				3
TGGT	-	1																																				1
TGTA	-	1	2	1																																		4
TGTC	-	12	7	4	1	1	1																															26
TGTT	-	20	5	2																																		27
TTAA	-	24	5	2	1																																	32
TTAC	-	6																																				6
TTAG	-	2	1																																			3
TTAT	-	68	13	4	1	2																																88
TTCA	-	32	11	1	2																																	46
TTCC	-	5	1																																			6
TTCG	-	5	2	1																																		8
TTCT	-	24	4																																			28
TTGA	-	27	17	2	2		3	1	1																													53
TTGC	-	1																																				1
TTGG	-	1																																				1
TTGT	-	9	2	3																																		14
TTTA	-	156	58	19	5	1					1																											240
TTTC	-	62	19	10																																		91
TTTG	-	49	14	5	2																																	70
AAAAC	61	6	3																																			70
AAAAG	66	4																																				70
AAAAT	369	95	14	3																																		481
AAACA	18		1																																			19
AAACC	2																																					2
AAACG	15	2	1																																			18
AAACT	8	1	1																																			10
AAAGA	46	5	4																																			55
AAAGC	24																																					24
AAAGG	3																																					3
AAAGT	9	1																																				10
AAATA	132	32	6	2																																		172
AAATC	28	2																																				30
AAATG	40	1	2																																			43
AAATT	154	15	1																																			170
AACAA	17	2																																				19
AACAG	3																																					3
AACAT	16	6	2	1																																		25
AACCA	1												1																									2
AACCC	3																																					3
AACCG	2						1						1																									4
AACCT	42	11	2	4												1						1																61
AACGA	11	2																																				13
AACGT	4																																					4
AACTC	1																																					1
AACTG	1			1																																		2
AACTT	15	4	4	1																																		24
AAGAA	62	1																																				63
AAGAC	1																																					1
AAGAG	19																																					19
AAGAT	7																																					7
AAGCA	7	1																																				8
AAGCG	9																																					9
AAGCT	2																																					2
AAGGA	1																																					1
AAGGT	1																																					1
AAGTA	11																																					11
AAGTC	5																																					5
AAGTG	15																																					15
AAGTT	10	3	3																																			16
AATAA	98	16	2	1																																		117
AATAC	6		1																																			7
AATAG	10	1																																				11
AATAT	13	8	1	2																																		24
AATCA	18	5																																				23
AATCG	10																																					10
AATCT	5																																					5
AATGA	43																																					43
AATGC	9																																					9
AATGG	2																																					2
AATGT	7																																					7
AATTA	61	6																																				67
AATTC	60	28	3	6																																		97
AATTG	42	3	1	3																																		49
AATTT	149	9																																				158
ACAAA	31	2	1																																			34
ACAAC	1																																					1
ACAAT	3	2	1																																			6
ACACA	3																																					3
ACACG	1																																					1
ACACT	1																																					1
ACATA	6	5		1																																		12
ACATC	1																																					1
ACATT	4																																					4
ACCGA			1																																			1
ACCTA	31	17	10		1		1				1		1																									62
ACCTG		2																																				2
ACCTT	2	1																																				3
ACGAA	7	1																																				8
ACGAG	1																																					1
ACGTA	1																																					1
ACGTG	1																																					1
ACTAA	3	1																																				4
ACTAC	1	1																																				2
ACTAG	2																																					2
ACTAT	1																																					1
ACTCA	4																																					4
ACTCC	2																																					2
ACTCG	1																																					1
ACTGA	2																																					2
ACTTA	1																																					1
ACTTC	2		1																																			3
ACTTT	4																																					4
AGAAA	72	3	2																																			77
AGAAC	1																																					1
AGAAG	29	2	2																																			33
AGAAT	5		2																																			7
AGACA	1																																					1
AGACG	2																																					2
AGACT		3																																				3
AGAGA	18	3								1																												22
AGAGC	4																																					4
AGAGG	3	2																																				5
AGAGT	3																																					3
AGATA	1																																					1
AGATG	13	2																																				15
AGATT	2	1																																				3
AGCAA	5																																					5
AGCAG	4																																					4
AGCCG	1																																					1
AGCGA	7																																					7
AGCTA	1																																					1
AGCTC	1																																					1
AGCTG	1																																					1
AGCTT		1																																				1
AGGAA	1	3																																				4
AGGCT	2																																					2
AGGTA	1	1																																				2
AGGTG		2																																				2
AGGTT	49	18	9		1																																	77
AGTAA	3																																					3
AGTAG	1																																					1
AGTGA	2																																					2
AGTGC	1																																					1
AGTTA	6																																					6
AGTTT	4	3																																				7
ATAAA	73	11																																				84
ATAAC	38	10	4																																			52
ATAAG	1			1																																		2
ATAAT	19																																					19
ATACA		1																																				1
ATACT	1																																					1
ATAGA	1																																					1
ATAGT	1	1																																				2
ATATA	20	1	1																																			22
ATATC	1	1	2	1																																		5
ATATG	1	1																																				2
ATATT	8	2																																				10
ATCAA	2	4	1																																			7
ATCAC	3		1																																			4
ATCAT		4																																				4
ATCCA	1																																					1
ATCCT	1																																					1
ATCGA	1																																					1
ATCGC		2	1																																			3
ATCTA	4	1																																				5
ATCTC	1		2																																			3
ATCTT	2																																					2
ATGAA	19	3																																				22
ATGAC	1																																					1
ATGAG	3																																					3
ATGAT	2																																					2
ATGCA	3																																					3
ATGCG	1	2																																				3
ATGTG	8			1																																		9
ATGTT	22	16	4						1																													43
ATTAA	33	4	1																																			38
ATTAC	6	3	1																																			10
ATTAG	4	1																																				5
ATTAT	15																																					15
ATTCA	33		1	1																																		35
ATTCC	1																																					1
ATTCG	10			1																																		11
ATTCT	5																																					5
ATTGA	28	12	1	1																																		42
ATTGC	5																																					5
ATTGT	4																																					4
ATTTA	43	5	2	1																																		51
ATTTC	58	2	3	1																																		64
ATTTG	16	4																																				20
ATTTT	324	70	12																																			406
CAAAA	29	3	2																																			34
CAAAC	1																																					1
CAAAG	3																																					3
CAAAT	13		1																																			14
CAACA	3																																					3
CAACT	3																																					3
CAATA	1																																					1
CAATC	1																																					1
CAATG			1			1																																2
CAATT	9																																					9
CACAC			1																																			1
CACAT	1			1																																		2
CACTA		2																																				2
CACTT	7	1																																				8
CAGAA	1																																					1
CAGAG	2	1																																				3
CAGCT	1																																					1
CAGTA	3																																					3
CAGTG	2																																					2
CAGTT	4																																					4
CATAA	3	7	1																																			11
CATAT	3																																					3
CATCA	2																																					2
CATCG	4	1																																				5
CATCT	4																																					4
CATGA	2																																					2
CATTA	2																																					2
CATTG	6	3																																				9
CATTT	21		2																																			23
CCGAA	1												1																									2
CCGAC	1																																					1
CCTAA	50	13	6	1																																		70
CCTAG	4																																					4
CCTAT	7	3																																				10
CCTCA	2																																					2
CCTCT					4																																	4
CCTTA	2																																					2
CGAAA	17	2	2																																			21
CGAAC	5	11	4																																			20
CGAAG	2																																					2
CGAAT	1																																					1
CGAGA	3																																					3
CGATG	2																																					2
CGATT	1																																					1
CGCAT	1	1																																				2
CGCCT		1																																				1
CGCTC	1																																					1
CGCTT	2																																					2
CGGCT	1																																					1
CGGTT	3												1																									4
CGTTT	5	2																																				7
CTAAA	3	1																																				4
CTAAC	55	18	4	3		3						1																										84
CTAAG	7																																					7
CTAAT			2																																			2
CTACA		1																																				1
CTAGG	2																																					2
CTATT	6																																					6
CTCAA	4																																					4
CTCAT	4	1																																				5
CTCCG	2																																					2
CTCCT	2																																					2
CTCGC	1																																					1
CTCGT	1																																					1
CTCTC	8	2	1																																			11
CTCTG	1																																					1
CTCTT	19	4	2																																			25
CTGCT	1	1																																				2
CTGGT	1																																					1
CTGTT	2																																					2
CTTAA	6																																					6
CTTAC	1																																					1
CTTAG	3																																					3
CTTAT	1																																					1
CTTCA	3																																					3
CTTCG	4																																					4
CTTCT	16																																					16
CTTGT	3																																					3
CTTTA	7	2																																				9
CTTTC	4	1																																				5
CTTTG	8	1																																				9
CTTTT	57	4																																				61
GAAAA	85	3	1																																			89
GAAAC	15			1																																		16
GAAAG	6																																					6
GAAAT	37			1																																		38
GAACC	3	2																																				5
GAAGA	10	3																																				13
GAAGC	1																																					1
GAAGG	1																																					1
GAAGT	3																																					3
GAATA	6																																					6
GAATC	7																																					7
GAATG	1																																					1
GAATT	23	3	1	1																																		28
GACGG	1																																					1
GACTT	1																																					1
GAGAA	12		5	1																																		18
GAGAG	10	2	2		1																																	15
GAGAT	7	2																																				9
GAGCA		1	1																																			2
GAGGA	2	1	2																																			5
GAGGC		2																																				2
GAGTG	1																																					1
GAGTT	1		2																																			3
GATAA	2																																					2
GATAG	3																																					3
GATAT	2																																					2
GATGC		1																																				1
GATGT	1	1																																				2
GATTC	1																																					1
GATTT	12	2	1																																			15
GCAAA	10	3																																				13
GCAAT	3																																					3
GCACT	2																																					2
GCAGA	1																																					1
GCATC	6																																					6
GCATT	1	1																																				2
GCCTA	4																																					4
GCGAA	4																																					4
GCGAT	5	1																																				6
GCGTC	1																																					1
GCTAG	2																																					2
GCTCG	1																																					1
GCTCT	3																																					3
GCTTT	16																																					16
GGAAA	1																																					1
GGAAT	1																																					1
GGGAC	2																																					2
GGTAA	1																																					1
GGTGC	1																																					1
GGTGT			1																																			1
GGTTA	42	13	3	4	2	1				2	1																											68
GGTTC	1	1																																				2
GGTTG	3	1																																				4
GGTTT	2																																					2
GTAAA	5		1																																			6
GTAAT	3	2																																				5
GTACA	1																																					1
GTATT	1																																					1
GTCCC	1																																					1
GTGAA	6																																					6
GTGAG	1																																					1
GTGAT	1																																					1
GTGTG	1		1																																			2
GTGTT	1																																					1
GTTAA	7	3																																				10
GTTAG	59	13	1									1																										74
GTTAT	7	2	1																																			10
GTTCA	2																																					2
GTTCG	2																																					2
GTTCT	1																																					1
GTTGA	1	1	1		1																																	4
GTTTA	3	1																																				4
GTTTC	14																																					14
GTTTG		1																																				1
GTTTT	28	2																																				30
TAAAA	164	8	2																																			174
TAAAC	12	1																																				13
TAAAG	8	4	2																																			14
TAAAT	42	6																																				48
TAACA	23	14	2		1																																	40
TAACC	70	34	13				1				1		1																									120
TAACG	3	1																																				4
TAACT	7																																					7
TAAGA	1																																					1
TAAGG	4																																					4
TAAGT	2																																					2
TAATA	6	1																																				7
TAATC	1																																					1
TAATG	2																																					2
TAATT	53																																					53
TACAA	7	2																																				9
TACAC	1																																					1
TACAT	1																																					1
TACCC	1																																					1
TACTG	2																																					2
TACTT	5		1																																			6
TAGAA	3																																					3
TAGAC	1																																					1
TAGAG	1																																					1
TAGAT	3																																					3
TAGCC	1																																					1
TAGGA	1																																					1
TAGGC	3																																					3
TAGGT	41	16	5			5																																67
TAGTC	1																																					1
TAGTT	3																																					3
TATAA	4	2																																				6
TATAT	18	2	1																																			21
TATCA	4	1																																				5
TATCT	1																																					1
TATGA	6	2																																				8
TATGG	1																																					1
TATGT	13	4	4																																			21
TATTA	8	3		2																																		13
TATTC	9																																					9
TATTG	2																																					2
TATTT	81	4	3	2																																		90
TCAAA	15	1																																				16
TCAAC	2	1																																				3
TCAAT	15	6																																				21
TCACA	1																																					1
TCACC		1																																				1
TCACT	9	1																																				10
TCAGG	1																																					1
TCAGT	1			2																																		3
TCATA	5																																					5
TCATC	8	3																																				11
TCATG	5																																					5
TCATT	36	1	2																																			39
TCCCG	1																																					1
TCCTC	2		1																																			3
TCCTT	6	1			1																																	8
TCGAA	11																																					11
TCGAT	1																																					1
TCGCA	1																																					1
TCGCT	5																																					5
TCGTC	1																																					1
TCGTT	9	1																																				10
TCTAA	4																																					4
TCTAC	5																																					5
TCTAG	2																																					2
TCTAT	3	2																																				5
TCTCA	11																																					11
TCTCC	1	3	2																																			6
TCTCG	2																																					2
TCTCT	31	3	1	3																																		38
TCTGA	1																																					1
TCTGC	2																																					2
TCTGT	1																																					1
TCTTA	2																																					2
TCTTC	13	1	2																																			16
TCTTG	1																																					1
TCTTT	46	3	1																																			50
TGAAA	50	2	2																																			54
TGAAG	9																																					9
TGAAT	21	2																																				23
TGACT	1																																					1
TGAGA	3																																					3
TGATA	3																																					3
TGATG	3																																					3
TGATT	9		1																																			10
TGCAA	7																																					7
TGCAG	4																																					4
TGCAT	3	2																																				5
TGCGA	6	2																																				8
TGCGG	2																																					2
TGCGT	1																																					1
TGCTT	6	2																																				8
TGGGT		1																																				1
TGTAA	4	1																																				5
TGTAG	1	2																																				3
TGTAT	3																																					3
TGTGA	2																																					2
TGTGT	3																																					3
TGTTA	8	5	1																																			14
TGTTG	6																																					6
TGTTT	15																																					15
TTAAA	85	5																																				90
TTAAC	7	2	2																																			11
TTAAG	9	1	1																																			11
TTAAT	35	4	1																																			40
TTACA	2																																					2
TTACC	1																																					1
TTACG	8																																					8
TTACT	3																																					3
TTAGA	3																																					3
TTAGC	4																																					4
TTAGG	62	16	5	2		1						1	1																									88
TTAGT	7	1																																				8
TTATA	11		1																																			12
TTATC	5																																					5
TTATG	11	3																																				14
TTATT	80	4	2																																			86
TTCAA	48	5	1																																			54
TTCAC	18																																					18
TTCAT	41	5																																				46
TTCCA	2																																					2
TTCCT			1																																			1
TTCGA	8																																					8
TTCGC	7																																					7
TTCGG	3									1																												4
TTCGT	10	3																																				13
TTCTA	5																																					5
TTCTC	14	4																																				18
TTCTG	1																																					1
TTCTT	24	1																																				25
TTGAA	60	20	4		1																																	85
TTGAC	2																																					2
TTGAG	2																																					2
TTGAT	8	3																																				11
TTGCA	1																																					1
TTGCC	1																																					1
TTGCT	6																																					6
TTGGG	1	1		1																																		3
TTGGT	1												1	1																								3
TTGTA	7	1	1																																			9
TTGTT	30	3																																				33
TTTAA	100	12	1				1																															114
TTTAC	17		2																																			19
TTTAG	2																																					2
TTTAT	138	20	5																																			163
TTTCA	43	2	2																																			47
TTTCC	1																																					1
TTTCG	23	4	2																																			29
TTTCT	74	8	3																																			85
TTTGA	11	3																																				14
TTTGC	8	2																																				10
TTTGG	5	1	1																																			7
TTTGT	38	4																																				42
TTTTA	275	49	5																																			329
TTTTC	189	11	2																																			202
TTTTG	71	9	3																																			83
AAAAAC	8																																					8
AAAAAG	2																																					2
AAAAAT	72	3																																				75
AAAACA	3																																					3
AAAACT	3																																					3
AAAAGA	3																																					3
AAAAGC	1																																					1
AAAATA	21	2	1																																			24
AAAATC	8	2																																				10
AAAATG	6																																					6
AAAATT	25	1																																				26
AAACAA	5																																					5
AAACAT	2																																					2
AAACGA	1																																					1
AAACTC	4																																					4
AAAGAG	5																																					5
AAAGCG	3																																					3
AAAGGT	1																																					1
AAAGTA	1																																					1
AAAGTG	3																																					3
AAAGTT	2	1																																				3
AAATAA	25																																					25
AAATAC	2																																					2
AAATAT	5																																					5
AAATCA	5																																					5
AAATCT	1																																					1
AAATGA	4																																					4
AAATGC	1																																					1
AAATGG			1																																			1
AAATGT	5	1																																				6
AAATTA	9																																					9
AAATTC	21																																					21
AAATTG	12																																					12
AAATTT	38	1																																				39
AACAAA	2																																					2
AACACA	1	1																																				2
AACATC	3																																					3
AACCCG	1																																					1
AACCGA	3																																					3
AACGTT	2																																					2
AACTAC	1																																					1
AACTCA	2																																					2
AACTCG	2																																					2
AACTTA	2																																					2
AACTTT	3																																					3
AAGAAA	5																																					5
AAGAAT	1																																					1
AAGAGA		2																																				2
AAGATG	3																																					3
AAGATT		1																																				1
AAGCCA	1																																					1
AAGCTT	3																																					3
AAGGAT	1																																					1
AAGGTC	3																																					3
AAGTCA	2																																					2
AAGTGA		1																																				1
AAGTGT	2																																					2
AAGTTA	1																																					1
AATAAA	15	2																																				17
AATAAC	1																																					1
AATAGG		1																																				1
AATAGT	1																																					1
AATATA	2																																					2
AATATG	2																																					2
AATATT	4																																					4
AATCAT	3																																					3
AATCTA	3																																					3
AATGAA	3																																					3
AATGAT	2																																					2
AATGTA	3																																					3
AATGTG	1																																					1
AATGTT	2																																					2
AATTAA	9	1																																				10
AATTAC	22	1																																				23
AATTAG	1																																					1
AATTAT	1																																					1
AATTCA	7																																					7
AATTCT	1																																					1
AATTGA	3																																					3
AATTGT	9	1																																				10
AATTTA	4																																					4
AATTTC	10	1			1																																	12
AATTTG	4																																					4
AATTTT	35	4																																				39
ACAAAA	4																																					4
ACAAAT	3																																					3
ACAACC	1																																					1
ACAAGG	1																																					1
ACAATT	4																																					4
ACACAT	4	1																																				5
ACACGA	1																																					1
ACACTT	1																																					1
ACATGG	1																																					1
ACATTC	1																																					1
ACATTT		1																																				1
ACCAAC	1																																					1
ACCCGA	1																																					1
ACCGCG	3																																					3
ACCGTT	3																																					3
ACGAAA		1																																				1
ACGAGA										1																												1
ACGATG	1																																					1
ACGCAC	1																																					1
ACGTTT	1																																					1
ACTCAA	1																																					1
ACTCGA	1																																					1
ACTTTA	1	1																																				2
ACTTTC	1																																					1
ACTTTG	1																																					1
ACTTTT	1																																					1
AGAAAA	1																																					1
AGAAAG	1																																					1
AGAAGC	2	1																																				3
AGAAGG	4																																					4
AGAAGT	1																																					1
AGAGAA	13	1																																				14
AGAGCA	1																																					1
AGAGTG		1																																				1
AGATCA	2																																					2
AGATGT	1																																					1
AGATTT	2																																					2
AGCAAA	1																																					1
AGCGAA	1																																					1
AGGTCA	9																																					9
AGGTCC	1																																					1
AGTAAA	2																																					2
AGTAAT		1																																				1
AGTAGC	1																																					1
AGTATT	1																																					1
AGTCTT	1																																					1
AGTGAA	1																																					1
AGTGAT	1																																					1
AGTTAT	1																																					1
ATAAAA	9																																					9
ATAAAT		1																																				1
ATAACT	2																																					2
ATAATC	5					1																																6
ATAATG	2																																					2
ATAATT	3																																					3
ATACAA	3																																					3
ATACAC	3	1																																				4
ATACAT	2																																					2
ATACCA	1																																					1
ATACTA	2																																					2
ATACTT	2																																					2
ATAGAC	1																																					1
ATATAA	1																																					1
ATATCA	2																																					2
ATATCG	1																																					1
ATATTA	1																																					1
ATATTG	2																																					2
ATCACT	1																																					1
ATCGCG	1																																					1
ATCGGT	4																																					4
ATCGTG	1																																					1
ATCTAC	1																																					1
ATCTAT	1																																					1
ATCTGA	1																																					1
ATCTTA	2																																					2
ATGAAA	3																																					3
ATGAAC	2																																					2
ATGAAG		1																																				1
ATGAAT	3																																					3
ATGATT						1																																1
ATGCAA	1																																					1
ATGGGC	3																																					3
ATGTAT	1																																					1
ATGTCC		2																																				2
ATGTTT	1																																					1
ATTAAA	9																																					9
ATTAAC	2																																					2
ATTAAT	4																																					4
ATTACA		1																																				1
ATTAGT	2																																					2
ATTATA	1	1																																				2
ATTATC	1																																					1
ATTATG	5																																					5
ATTCAA	1																																					1
ATTCAC	3																																					3
ATTCAT	1																																					1
ATTCGC	5																																					5
ATTCTC	1																																					1
ATTGAA	4																																					4
ATTGTA	6	3	1																																			10
ATTGTT	1																																					1
ATTTAA	4																																					4
ATTTAC	6																																					6
ATTTAT	2																																					2
ATTTCA	5																																					5
ATTTCG	2																																					2
ATTTGA	8																																					8
ATTTGT	2																																					2
ATTTTA	2																																					2
ATTTTC	3																																					3
ATTTTG	4																																					4
ATTTTT	62	1																																				63
CAAAAA	4																																					4
CAAAGG	1																																					1
CAAAGT	1																																					1
CAACAG	3																																					3
CAACCA	1																																					1
CAACCT	3																																					3
CAATTA	5	6	1																																			12
CAATTC	1																																					1
CAATTT	3																																					3
CACACG	1																																					1
CACACT	1																																					1
CACCAT	3																																					3
CACTCT	1																																					1
CACTTT	2																																					2
CAGAAG	3																																					3
CAGCAA	2																																					2
CAGCGG	2																																					2
CATAAT	1																																					1
CATCAA		1																																				1
CATCCT	1																																					1
CATCGT	1																																					1
CATCTT	1																																					1
CATGCC	2																																					2
CATTAT	1																																					1
CATTCA	6																																					6
CATTTG	1																																					1
CATTTT	1																																					1
CCACCG	3																																					3
CCATCA	2																																					2
CCATGC	1																																					1
CCATTT	3																																					3
CCCCAG	3																																					3
CCGCTG	2																																					2
CCGTTA	3																																					3
CCTCAT		1																																				1
CCTCCA	3																																					3
CCTCTG	1																																					1
CCTTTT		2																																				2
CGAATT	1																																					1
CGACTC	1																																					1
CGACTT	1																																					1
CGAGAC	2																																					2
CGAGAG	1																																					1
CGATAT	4																																					4
CGATCA	2																																					2
CGATCG	3																																					3
CGCGGT	2																																					2
CGCGTC		1																																				1
CGCTCT	1																																					1
CGGCCA	1																																					1
CGGGTT	1																																					1
CGGTGG	1																																					1
CGTATA	3																																					3
CGTGTG	1																																					1
CGTTCT			1																																			1
CGTTTG	2																																					2
CTAACA	1																																					1
CTAATT	1																																					1
CTCACT	5	1																																				6
CTCCTT			1																																			1
CTCGAA	1																																					1
CTCGTC	1																																					1
CTCTCA	5	1																																				6
CTCTCG	7																																					7
CTGATG	2																																					2
CTGCGG	2																																					2
CTGCTT	1																																					1
CTGTTG	2																																					2
CTTAAA	2																																					2
CTTAAG	1																																					1
CTTAAT	2																																					2
CTTCAT	1																																					1
CTTCTC	6																																					6
CTTCTG	1																																					1
CTTGAC	1																																					1
CTTTCA	2																																					2
CTTTCG	3																																					3
CTTTCT	2																																					2
CTTTTT	5																																					5
GAAAAA	1																																					1
GAAAAC	2																																					2
GAAAAG	2																																					2
GAAAAT	1																																					1
GAAAGA	1																																					1
GAAAGC	3																																					3
GAAATG	2																																					2
GAAATT	2																																					2
GAAGAC	1	1																																				2
GAAGAG	1																																					1
GAAGAT	2																																					2
GAAGTA		1																																				1
GAAGTC		3																																				3
GAATAA	1																																					1
GAATGA	7	1																																				8
GAATTA	3																																					3
GAATTT	3																																					3
GACACA	1																																					1
GACGAA	1																																					1
GACGAG	2																																					2
GAGAAA	5																																					5
GAGAAG	2																																					2
GAGAAT	1																																					1
GAGAGC	3	1																																				4
GAGAGT		1																																				1
GAGCGA	2	1																																				3
GAGGAA	1																																					1
GAGGAT	1																																					1
GAGTGC	1																																					1
GAGTTC	3																																					3
GAGTTT	2																																					2
GATGAA	6	1																																				7
GATGAC	1																																					1
GATGTT	1																																					1
GATTAA	2																																					2
GATTAC	1																																					1
GATTTT	3	1																																				4
GCAAAT	1																																					1
GCAACA	4																																					4
GCAACT	1																																					1
GCAGAA	1																																					1
GCATAA	1																																					1
GCATCA	2																																					2
GCATGC	1																																					1
GCATGG	6	1																																				7
GCCATT	1																																					1
GCCCAT	13	3																																				16
GCCCGA	1																																					1
GCCGCA	1																																					1
GCGAAA	4																																					4
GCGAAT	2																																					2
GCGAGA	2																																					2
GCGCAT	3																																					3
GCGGAA	1																																					1
GCTCTC	1																																					1
GCTCTT	1																																					1
GCTGCC	1																																					1
GCTGCG	1																																					1
GCTGGA	1																																					1
GCTGTA	1																																					1
GCTTCT		1																																				1
GCTTTC	1																																					1
GCTTTT	3																																					3
GGAAAA	4																																					4
GGAAAG			2																																			2
GGAGAA		1																																				1
GGAGAT	1																																					1
GGAGCT	1																																					1
GGCAGT	3																																					3
GGCATG	1																																					1
GGCATT	2																																					2
GGCTAT		1																																				1
GGTAAC	1																																					1
GGTCAC		1																																				1
GGTGAC	1																																					1
GGTGGA	3																																					3
GGTTTA			1																																			1
GTAATA	2																																					2
GTAATT	5		1																																			6
GTCGCG		1																																				1
GTGAAT	8																																					8
GTTCAT	1																																					1
GTTGAG	1																																					1
GTTGCT	2																																					2
GTTTAA	1																																					1
GTTTAG	3																																					3
GTTTTC	4																																					4
GTTTTT	4																																					4
TAAAAA	21	3																																				24
TAAAAT	11	2																																				13
TAAACT	6	1																																				7
TAAAGC	2																																					2
TAAAGT	7	1																																				8
TAAATG	1	1																																				2
TAAATT	6																																					6
TAACAT	1																																					1
TAACGG	1																																					1
TAACGT	1																																					1
TAACTT	6	2																																				8
TAAGAG	1																																					1
TAAGTT		1																																				1
TAATAT	4																																					4
TAATCA	1	1																																				2
TAATTA	1																																					1
TAATTG	6																																					6
TAATTT	6																																					6
TACACA	1																																					1
TACATA	2																																					2
TACGAT	3																																					3
TACTAA	2																																					2
TAGAAT	2																																					2
TAGAGA	1																																					1
TAGTAT	2																																					2
TATACA	1	1																																				2
TATACG	1																																					1
TATACT	2																																					2
TATATG	1																																					1
TATCAA	1																																					1
TATCAT	2																																					2
TATCTT	3																																					3
TATGAA	1																																					1
TATGAT	4																																					4
TATTAA	1																																					1
TATTAG	1																																					1
TATTCA	1																																					1
TATTTA	2																																					2
TATTTG	3	1																																				4
TATTTT	21																																					21
TCAAAA	2																																					2
TCAAAT	3																																					3
TCAAGA	1																																					1
TCAAGG	1																																					1
TCACAT	1																																					1
TCAGCA	1																																					1
TCATAA	1																																					1
TCATCT	2																																					2
TCATTA	2																																					2
TCATTC	1																																					1
TCATTT	1																																					1
TCCACC	5																																					5
TCCAGC		1																																				1
TCCCTT			1																																			1
TCCTTT	1																																					1
TCGATT	1																																					1
TCGCAT	1																																					1
TCGCTC	3																																					3
TCGCTT	2																																					2
TCGGTC	1																																					1
TCGTCT	2																																					2
TCGTGA	1																																					1
TCGTTC	1																																					1
TCGTTT	2	1																																				3
TCTAAT		1																																				1
TCTACA	2																																					2
TCTATT	1																																					1
TCTCAT			1																																			1
TCTCCT	1																																					1
TCTCGC	4																																					4
TCTCTT	7																																					7
TCTTAA	1																																					1
TCTTCA	4																																					4
TCTTTC	1																																					1
TCTTTG	2																																					2
TCTTTT		1																																				1
TGAAAA	9																																					9
TGAAAT	2																																					2
TGAAGA	3																																					3
TGAATA	1																																					1
TGAATT	6																																					6
TGACCT	11																																					11
TGACTT	1																																					1
TGAGGC	1																																					1
TGAGGG	1																																					1
TGAGTT	1																																					1
TGATAA	1																																					1
TGATAT	1																																					1
TGATGC	1																																					1
TGATTC	1																																					1
TGATTT	2																																					2
TGCAAA	2																																					2
TGCATT	2																																					2
TGCGAA	8	1																																				9
TGCGAG	1																																					1
TGCTAC	1																																					1
TGCTCC	1																																					1
TGCTGT	2																																					2
TGGAAA	2																																					2
TGGACA		2																																				2
TGGAGG	5																																					5
TGGCGG	1																																					1
TGGCTG	2																																					2
TGGGAC	1																																					1
TGGTGA	2																																					2
TGTAAA	1		1																																			2
TGTAAT	20	5																																				25
TGTATG	2																																					2
TGTCTA	1																																					1
TGTGCG	2																																					2
TGTGGA	1																																					1
TGTGTA	4	3																																				7
TGTGTT	2	3																																				5
TGTTGC	1																																					1
TGTTGG	2																																					2
TGTTTT	4																																					4
TTAAAA	9																																					9
TTAAAT	8																																					8
TTAACA	2																																					2
TTAACT	2																																					2
TTAAGA	1																																					1
TTAAGT		1																																				1
TTAATT	7																																					7
TTACAA	3	4																																				7
TTACAT	1																																					1
TTACCA	1																																					1
TTACGA	1																																					1
TTAGAA	1																																					1
TTATAA	1																																					1
TTATAT	1																																					1
TTATGA	1																																					1
TTATTT	18	1																																				19
TTCAAA	2																																					2
TTCAAT	3																																					3
TTCACT		1																																				1
TTCAGA	1																																					1
TTCATA	3																																					3
TTCATC	1																																					1
TTCATT	2																																					2
TTCCAT	2																																					2
TTCCGC	3																																					3
TTCGCA	1																																					1
TTCTCC	1																																					1
TTCTCG	1																																					1
TTCTCT	6	2																																				8
TTCTGA	1																																					1
TTCTTA	3																																					3
TTCTTT	3																																					3
TTGAAA	13	1																																				14
TTGAAT	15																																					15
TTGAGT	1																																					1
TTGCAC	1																																					1
TTGGAA	1																																					1
TTGTAA	4																																					4
TTGTAG	1																																					1
TTGTGT	3																																					3
TTGTTT	3																																					3
TTTAAA	20																																					20
TTTAAC	5	1																																				6
TTTAAT	6	2																																				8
TTTACA	7																																					7
TTTACT	2																																					2
TTTATA	4																																					4
TTTATC	1																																					1
TTTATT	23	1																																				24
TTTCAA	8																																					8
TTTCAC	1																																					1
TTTCAT	3																																					3
TTTCCA	1		3																																			4
TTTCCG	2																																					2
TTTCCT	1																																					1
TTTCGC	5																																					5
TTTCGT	1																																					1
TTTCTC	4																																					4
TTTCTT	4																																					4
TTTGAA	7																																					7
TTTGAG	1																																					1
TTTGAT	4																																					4
TTTGTA	1																																					1
TTTGTT	6																																					6
TTTTAA	15																																					15
TTTTAC	7																																					7
TTTTAT	31																																					31
TTTTCA	4																																					4
TTTTCC	1																																					1
TTTTCT	3																																					3
TTTTGA	4																																					4
TTTTGC	2																																					2
TTTTGT	3																																					3
TTTTTA	41	5																																				46
TTTTTC	3																																					3
TTTTTG	16																																					16

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5																				5
AC/GT	-	-	-	1160	716	415	330	232	159	79	72	38	8	14	6	8	1	1		1																	1	3241
AG/CT	-	-	-	1797	1222	894	739	522	394	290	175	109	61	50	38	23	30	37	28	14	15	12	5	3													1	6459
AT/AT	-	-	-	240	73	38	15	18	3		1	4																										392
CG/CG	-	-	-	28																																		28
AAC/GTT	-	-	315	157	49	30	7	1	4																													563
AAG/CTT	-	-	1080	430	259	153	53	36	13	12	6	1		1	1									2	2													2049
AAT/ATT	-	-	779	345	172	73	34	13	13	8	2	3	2	2		1		2																				1449
ACC/GGT	-	-	69	24	11		2																															106
ACG/CGT	-	-	62	23	15	4	4		1																													109
ACT/AGT	-	-	24	11	2	4																																41
AGC/CTG	-	-	277	161	62	45	9	1	4																													559
AGG/CCT	-	-	36	17																																		53
ATC/ATG	-	-	212	93	69	22	15	4	5				2	1		2	1																					426
CCG/CGG	-	-	19	9	4		1																															33
AAAC/GTTT	-	197	61	24	3	4	1	4																														294
AAAG/CTTT	-	275	66	27	5		2																															375
AAAT/ATTT	-	728	222	70	17	8	3				1			1																								1050
AACC/GGTT	-	7																																				7
AACG/CGTT	-	24	2	4																																		30
AACT/AGTT	-	31	6	1			1																															39
AAGC/CTTG	-	12	6																																			18
AAGG/CCTT	-	12	1																																			13
AAGT/ACTT	-	16																																				16
AATC/ATTG	-	105	47	16	3	3	3	5	2		1																											185
AATG/ATTC	-	181	61	27	10	2																																281
AATT/AATT	-	123	18	4	3	2																																150
ACAG/CTGT	-	76	23	13	6	2	2			1																												123
ACAT/ATGT	-	12	10	3			1																															26
ACCG/CGGT	-	3	1	1																																		5
ACCT/AGGT	-	5																																				5
ACGC/CGTG	-	1	4																																			5
ACGT/ACGT	-	1	2																																			3
ACTC/AGTG	-	98	30	17	22	2				1																												170
ACTG/AGTC	-	3	4																																			7
AGAT/ATCT	-	4															1																					5
AGCC/CTGG	-	1	2																																			3
AGCG/CGCT	-	89	33	7		3																																132
AGCT/AGCT	-	2																																				2
AGGC/CCTG	-	5	2																																			7
ATCC/ATGG	-	23	7	1																																		31
ATCG/ATCG	-	5	8	1	1																																	15
CCCG/CGGG	-	1																																				1
AAAAC/GTTTT	338	31	10																																			379
AAAAG/CTTTT	721	43	13																																			777
AAAAT/ATTTT	1734	309	51	8																																		2102
AAACC/GGTTT	12	2	1										2	1																								18
AAACG/CGTTT	126	17	5	1																																		149
AAACT/AGTTT	45	9	1																																			55
AAAGC/CTTTG	93	9																																				102
AAAGG/CCTTT	23	5	1		1																																	30
AAAGT/ACTTT	72	7	6																																			85
AAATC/ATTTG	132	24	4																																			160
AAATG/ATTTC	388	16	13	2																																		419
AAATT/AATTT	755	66	6	1			1																															829
AACAC/GTGTT	17																																					17
AACAG/CTGTT	10																																					10
AACAT/ATGTT	147	72	19	2	1				1																													242
AACCC/GGGTT	7	3		1																																		11
AACCG/CGGTT	20	14	5				1			1			3																									44
AACCT/AGGTT	501	169	58	14	4	10	2			2	3	3	3			1						1																771
AACGC/CGTTG	1																																					1
AACGT/ACGTT	16	1																																				17
AACTC/AGTTG	18	2	3		1																																	24
AACTG/AGTTC	10			3																																		13
AACTT/AAGTT	70	13	10	1																																		94
AAGAC/CTTGT	6																																					6
AAGAG/CTCTT	181	20	12	4						1																												218
AAGAT/ATCTT	23			1																																		24
AAGCG/CGCTT	41																																					41
AAGCT/AGCTT	17	1																																				18
AAGGC/CCTTG	1																																					1
AAGGG/CCCTT	1																																					1
AAGGT/ACCTT	13	2																																				15
AAGTC/ACTTG	9																																					9
AAGTG/ACTTC	74	2	1																																			77
AATAC/ATTGT	34	6	3																																			43
AATAG/ATTCT	53	3	2																																			58
AATAT/ATATT	122	19	4	4																																		149
AATCC/ATTGG	2																																					2
AATCG/ATTCG	51			1																																		52
AATCT/AGATT	26	3	2																																			31
AATGC/ATTGC	38	6	1			1																																46
AATGG/ATTCC	7																																					7
AATGT/ACATT	31	6	1																																			38
AATTC/AATTG	339	79	12	12	1																																	443
ACACC/GGTGT	1		3																																			4
ACACG/CGTGT	1																																					1
ACACT/AGTGT	4	6																																				10
ACAGT/ACTGT	6																																					6
ACATC/ATGTG	23	1	1	2																																		27
ACATG/ATGTC	8																																					8
ACCAG/CTGGT	1																																					1
ACCAT/ATGGT	1																																					1
ACCCG/CGGGT	1																																					1
ACCCT/AGGGT	1																																					1
ACCGC/CGGTG	3																																					3
ACCTC/AGGTG	3	3																																				6
ACCTG/AGGTC	1	2																																				3
ACGAG/CGTCT	10																																					10
ACGCG/CGCGT	1																																					1
ACGGG/CCCGT	5																																					5
ACGTC/ACGTG	1																																					1
ACTAG/AGTCT	6	3																																				9
ACTAT/AGTAT	3	1																																				4
ACTCC/AGTGG	3																																					3
ACTCG/AGTCG	1																																					1
ACTCT/AGAGT	10																																					10
ACTGC/AGTGC	9																																					9
AGAGC/CTCTG	18	3	1																																			22
AGAGG/CCTCT	28	10	8		5																																	51
AGATC/ATCTG	1																																					1
AGATG/ATCTC	54	8	2																																			64
AGCCG/CGGCT	3																																					3
AGCCT/AGGCT	18																																					18
AGCGG/CCGCT	3																																					3
AGCTC/AGCTG	3																																					3
AGGAT/ATCCT	12	3																																				15
AGGCG/CCTCG	1	3																																				4
ATATC/ATATG	27	9	2	1																																		39
ATCGC/ATGCG	26	10	1																																			37
AAAAAC/GTTTTT	62																																					62
AAAAAG/CTTTTT	30	1																																				31
AAAAAT/ATTTTT	359	18	1																																			378
AAAACG/CGTTTT	10	2																																				12
AAAACT/AGTTTT	3																																					3
AAAAGC/CTTTTG	7																																					7
AAAAGG/CCTTTT	9	2																																				11
AAAAGT/ACTTTT	13																																					13
AAAATC/ATTTTG	32	3																																				35
AAAATG/ATTTTC	40																																					40
AAAATT/AATTTT	143	10																																				153
AAACAC/GTGTTT	6	4																																				10
AAACAT/ATGTTT	3																																					3
AAACCG/CGGTTT	3																																					3
AAACCT/AGGTTT	3		1																																			4
AAACGC/CGTTTG	2																																					2
AAACGG/CCGTTT	2																																					2
AAACGT/ACGTTT	1																																					1
AAACTC/AGTTTG	12																																					12
AAACTT/AAGTTT	11	3																																				14
AAAGAC/CTTTGT	2																																					2
AAAGAG/CTCTTT	45	5																																				50
AAAGAT/ATCTTT	4																																					4
AAAGCC/CTTTGG	1																																					1
AAAGCG/CGCTTT	22																																					22
AAAGCT/AGCTTT	2																																					2
AAAGGC/CCTTTG	1																																					1
AAAGGG/CCCTTT			3																																			3
AAAGGT/ACCTTT	1																																					1
AAAGTC/ACTTTG	5																																					5
AAAGTG/ACTTTC	10	2																																				12
AAAGTT/AACTTT	27	6																																				33
AAATAC/ATTTGT	14	1																																				15
AAATAG/ATTTCT	1																																					1
AAATAT/ATATTT	17	1																																				18
AAATCG/ATTTCG	3																																					3
AAATCT/AGATTT	6																																					6
AAATGC/ATTTGC	8																																					8
AAATGG/ATTTCC	10		4																																			14
AAATGT/ACATTT	24	3	1																																			28
AAATTC/AATTTG	77																																					77
AAATTG/AATTTC	65	2			1																																	68
AAATTT/AAATTT	80	1																																				81
AACAAT/ATTGTT	2																																					2
AACACC/GGTGTT	3																																					3
AACACG/CGTGTT	1																																					1
AACACT/AGTGTT	1																																					1
AACAGC/CTGTTG	16																																					16
AACATC/ATGTTG	4	1																																				5
AACATG/ATGTTC	3																																					3
AACATT/AATGTT	7																																					7
AACCAC/GGTTGT	2																																					2
AACCCG/CGGGTT	3																																					3
AACCTC/AGGTTG	4																																					4
AACGAG/CGTTCT	2		1							1																												4
AACGGT/ACCGTT	8																																					8
AACGTT/AACGTT	3																																					3
AACTAC/AGTTGT	2																																					2
AACTAT/AGTTAT	3																																					3
AACTCG/AGTTCG	7																																					7
AACTGC/AGTTGC	1																																					1
AAGAAT/ATTCTT	5																																					5
AAGACG/CGTCTT	4	1																																				5
AAGACT/AGTCTT	1																																					1
AAGAGC/CTCTTG	2																																					2
AAGAGG/CCTCTT	2																																					2
AAGAGT/ACTCTT	1																																					1
AAGATC/ATCTTG	3																																					3
AAGATG/ATCTTC	23	2																																				25
AAGATT/AATCTT	8	1																																				9
AAGCAG/CTGCTT	8	2																																				10
AAGCAT/ATGCTT	1																																					1
AAGCGG/CCGCTT	4																																					4
AAGCTT/AAGCTT	4																																					4
AAGGAC/CCTTGT	1																																					1
AAGGAG/CCTTCT	14	1	1																																			16
AAGGAT/ATCCTT	1																																					1
AAGGTC/ACCTTG	25																																					25
AAGTAG/ACTTCT	1	1																																				2
AAGTAT/ACTTAT	4																																					4
AAGTCG/ACTTCG	1	3																																				4
AAGTGC/ACTTGC	1																																					1
AAGTGT/ACACTT	3																																					3
AATACC/ATTGGT	1																																					1
AATACT/AGTATT	10																																					10
AATAGG/ATTCCT		1																																				1
AATAGT/ACTATT	3	1																																				4
AATATC/ATATTG	6																																					6
AATATG/ATATTC	12																																					12
AATATT/AATATT	14																																					14
AATCAG/ATTCTG	2																																					2
AATCAT/ATGATT	21	1				2																																24
AATCGT/ACGATT	5																																					5
AATCTG/AGATTC	2																																					2
AATGAG/ATTCTC	10	1	1																																			12
AATGAT/ATCATT	11																																					11
AATGCC/ATTGGC	2																																					2
AATGCG/ATTCGC	17	1																																				18
AATGGC/ATTGCC	1																																					1
AATGGT/ACCATT	1																																					1
AATGTG/ACATTC	20																																					20
AATTAC/AATTGT	84	21	3																																			108
AATTAG/AATTCT	9	1																																				10
AATTAT/AATTAT	7	1																																				8
AATTCC/AATTGG	2																																					2
AATTCG/AATTCG	1																																					1
ACACAG/CTGTGT	1																																					1
ACACAT/ATGTGT	14	5																																				19
ACACGC/CGTGTG	5																																					5
ACACTC/AGTGTG	1																																					1
ACAGCC/CTGTGG	2																																					2
ACAGCT/AGCTGT	1																																					1
ACATAG/ATGTCT	2																																					2
ACATAT/ATATGT	7	1																																				8
ACATCC/ATGTGG	1																																					1
ACATCT/AGATGT	4																																					4
ACATGG/ATGTCC	1	4																																				5
ACCATC/ATGGTG	7																																					7
ACCCTC/AGGGTG	1																																					1
ACCGAG/CGGTCT	3																																					3
ACCGAT/ATCGGT	4																																					4
ACCGCC/CGGTGG	5																																					5
ACCGCG/CGCGGT	5	1																																				6
ACCGTC/ACGGTG	1																																					1
ACCGTG/ACGGTC		1																																				1
ACCTCC/AGGTGG	16																																					16
ACCTGG/AGGTCC	1																																					1
ACGAGG/CCTCGT	3																																					3
ACGATC/ATCGTG	4																																					4
ACGATG/ATCGTC	3																																					3
ACGCGG/CCGCGT		1																																				1
ACGGCC/CCGTGG	1																																					1
ACGTAT/ACGTAT	4																																					4
ACTATC/AGTGAT	2																																					2
ACTCCG/AGTCGG	1																																					1
ACTCGC/AGTGCG	2																																					2
ACTCTC/AGAGTG	11	4																																				15
ACTGCC/AGTGGC	3																																					3
ACTGCT/AGCAGT	2																																					2
ACTGGG/AGTCCC	1																																					1
AGAGAT/ATCTCT	1																																					1
AGAGCG/CGCTCT	24	2																																				26
AGAGGC/CCTCTG	1																																					1
AGATAT/ATATCT	1																																					1
AGATGG/ATCTCC	1																																					1
AGCAGG/CCTGCT	1																																					1
AGCATC/ATGCTG	6																																					6
AGCCAT/ATGGCT		1																																				1
AGCCCC/CTGGGG	3																																					3
AGCCCG/CGGGCT	1																																					1
AGCCGC/CGGCTG	4																																					4
AGCCTC/AGGCTG	1																																					1
AGCGGC/CCGCTG	5																																					5
AGCTCC/AGCTGG	2	1																																				3
AGGATG/ATCCTC	2	1																																				3
ATATCG/ATATCG	5																																					5
ATCGCG/ATCGCG	4																																					4
ATGCCC/ATGGGC	26	4																																				30
ATGCGC/ATGCGC	4																																					4
