Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_003148445.1/fasta/hub_GCA_003148445.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              20
Total size of examined sequences (bp):           9106213
Total number of identified SSRs:                 1898
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  20
Number of SSRs present in compound formation:    425


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	77
2	376
3	880
4	111
5	115
6	339

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	4	1	6	5	2		1	1			1														1										1									2										2		1	3						1																																						1																																			36
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4	3	3	2	3	3	1	2	4						1						1					1								1		1			1					1											1		1	4																								1																																																						2	41
AG	-	-	-	3	1	1	1	2						1																																																																																																																																												9
AT	-	-	-	54	30	23	17	24	14	20	11	8	6	7	5	2		1	1	1				1								1																																																																																																																										226
CG	-	-	-	1																																																																																																																																																						1
CT	-	-	-	1		1								1																																																																																																																																												3
GA	-	-	-	4		1																																																																																																																																																				5
GC	-	-	-	2																																																																																																																																																						2
GT	-	-	-			1																																																																																																																																																				1
TA	-	-	-	41	17	9	6	17	12	3	2	3	2	3	1	3	3	2			1																																																																																																																																					125
TC	-	-	-	4																																																																																																																																																						4
AAC	-	-	1				1																																																																																																																																																			2
AAG	-	-	6	3	1	1																																																																																																																																																				11
AAT	-	-	30	14	15	12	4	4	4	2	6		1																																																																																																																																													92
ACA	-	-	1	2	3	1	1			1																																																																																																																																																9
ACT	-	-	9	2	7	4	1										1			1																																																																																																																																						25
AGA	-	-	3	3	1						1																																																																																																																																															8
AGC	-	-	1		1	1																																																																																																																																																				3
AGG	-	-	2	2						1																																																																																																																																																5
AGT	-	-	2	1				1																																																																																																																																																		4
ATA	-	-	17	10	7	11	4	4	1	3			1						1																																																																																																																																							59
ATC	-	-	9	4	3			1																																																																																																																																																		17
ATG	-	-	7	5		1					1																																																																																																																																															14
ATT	-	-	27	20	11	7	4	4	3	4	2			2																																																																																																																																												84
CAA	-	-	8	5	5	3	1				1																																																																																																																																															23
CAC	-	-		2			1																																																																																																																																																			3
CAG	-	-		1	1																																																																																																																																																					2
CAT	-	-	5	1	1		1	1																																																																																																																																																		9
CCA	-	-	3	1																																																																																																																																																						4
CCT	-	-	1				1			1		1																																																																																																																																														4
CTA	-	-	5	1	3	1				1			1																																																																																																																																													12
CTC	-	-	2	1									1																																																																																																																																													4
CTG	-	-	1	1				1																																																																																																																																																		3
CTT	-	-	1	2				1																																																																																																																																																		4
GAA	-	-	11	2	6	2							1																																																																																																																																													22
GAG	-	-	3	1		1	1																																																																																																																																																			6
GAT	-	-	8	5	3	3		1		1																																																																																																																																																21
GCA	-	-					1																																																																																																																																																			1
GCT	-	-		1	1																																																																																																																																																					2
GGA	-	-	2	1	1																																																																																																																																																					4
GGT	-	-	1	2			2																																																																																																																																																			5
GTA	-	-	14	6	1	2	2		1		1	1		1	1												1																																																																																																																															31
GTG	-	-	2		1		1																																																																																																																																																			4
GTT	-	-	2	5		1		2										1																																																																																																																																								11
TAA	-	-	30	16	10	11	3	1	2	1	3		1																																																																																																																																													78
TAC	-	-	4		2	3	1																																																																																																																																																			10
TAG	-	-	1	2	1		1		1				1																																																																																																																																													7
TAT	-	-	35	13	23	8	4	10	2	2	2	1	1		1																																																																																																																																											102
TCA	-	-	19	4	5	2	1																																																																																																																																																			31
TCC	-	-	2	3	3	2	1	1																																																																																																																																																		12
TCT	-	-	4	5	4		1	1	1			2																																																																																																																																														18
TGA	-	-	7	1	2	3																																																																																																																																																				13
TGC	-	-		1																																																																																																																																																						1
TGG	-	-	1		1																																																																																																																																																					2
TGT	-	-	9	2	1	1																																																																																																																																																				13
TTA	-	-	24	15	5	10	7	2	1		2																																																																																																																																															66
TTC	-	-	6	2	1	1																																																																																																																																																				10
TTG	-	-	3	3	1	1					1																																																																																																																																															9
AAAG	-	1																																																																																																																																																								1
AAAT	-	10	1	3																																																																																																																																																						14
AAGG	-		1																																																																																																																																																							1
AATA	-	7	4																																																																																																																																																							11
AATT	-	2	1																																																																																																																																																							3
ATAA	-	2			1																																																																																																																																																					3
ATGC	-	9	2	1																																																																																																																																																						12
ATGT	-		1																																																																																																																																																							1
ATTA	-	2																																																																																																																																																								2
ATTG	-	1																																																																																																																																																								1
ATTT	-	7	2	1																																																																																																																																																						10
CAAT	-		1																																																																																																																																																							1
CATG	-	1	1																																																																																																																																																							2
CTTC	-	1																																																																																																																																																								1
GAAA	-	2																																																																																																																																																								2
TAAA	-	4					1																																																																																																																																																			5
TAAT	-	2	2																																																																																																																																																							4
TATT	-	8																																																																																																																																																								8
TCTA	-		1																																																																																																																																																							1
TGCA	-	4	1		1																																																																																																																																																					6
TTAA	-	6	1																																																																																																																																																							7
TTAT	-	2	2																																																																																																																																																							4
TTCA	-	1																																																																																																																																																								1
TTCT	-	1																																																																																																																																																								1
TTGA	-	1																																																																																																																																																								1
TTTA	-	3	1																																																																																																																																																							4
TTTC	-	1	1					1																																																																																																																																																		3
TTTG	-	1																																																																																																																																																								1
AAAAC	3																																																																																																																																																									3
AAAAG	2																																																																																																																																																									2
AAAAT	6																																																																																																																																																									6
AAAGA	4																																																																																																																																																									4
AAAGG	1																																																																																																																																																									1
AAATA	5																																																																																																																																																									5
AAATT	4																																																																																																																																																									4
AACAT																								1																																																																																																																																		1
AAGAA	1																																																																																																																																																									1
AATAA	1																																																																																																																																																									1
AATAT	1																																																																																																																																																									1
AATTA	1																																																																																																																																																									1
AATTC	1																																																																																																																																																									1
AATTT	6																																																																																																																																																									6
ACACA	1																																																																																																																																																									1
AGAAA	2																																																																																																																																																									2
AGACG	1																																																																																																																																																									1
ATAAA		1																																																																																																																																																								1
ATAAT	3																																																																																																																																																									3
ATACA	1																																																																																																																																																									1
ATATA	5																																																																																																																																																									5
ATATG	1																																																																																																																																																									1
ATATT	3																																																																																																																																																									3
ATCAA	2																																																																																																																																																									2
ATTAA	2																																																																																																																																																									2
ATTCA	1																																																																																																																																																									1
ATTGG	1																																																																																																																																																									1
ATTTC	1																																																																																																																																																									1
ATTTT	1																																																																																																																																																									1
CAAAA	1																																																																																																																																																									1
CAATT	1																																																																																																																																																									1
CCTTT		1																																																																																																																																																								1
CGAGA	1	1																																																																																																																																																								2
CTATA	1																																																																																																																																																									1
CTTTT	1																																																																																																																																																									1
GAAAA	1																																																																																																																																																									1
GAAAG		1																																																																																																																																																								1
GATGG	1																																																																																																																																																									1
GATTG	1																																																																																																																																																									1
GTTTT	1																																																																																																																																																									1
TAAAT	2																																																																																																																																																									2
TATAA	2	1																																																																																																																																																								3
TATTA	2																																																																																																																																																									2
TATTT	2																																																																																																																																																									2
TCATA	1																																																																																																																																																									1
TGATT	1																																																																																																																																																									1
TTAAA	2																																																																																																																																																									2
TTAAG	1																																																																																																																																																									1
TTAAT	4																																																																																																																																																									4
TTATT	5	2																																																																																																																																																								7
TTCCC	1																																																																																																																																																									1
TTCTC	1																																																																																																																																																									1
TTGAT	2																																																																																																																																																									2
TTTAA	2																																																																																																																																																									2
TTTAC	1																																																																																																																																																									1
TTTAT	1	1																																																																																																																																																								2
TTTCT	1																																																																																																																																																									1
TTTTA	2	1																																																																																																																																																								3
TTTTC	2																																																																																																																																																									2
AAAAAT	1																																																																																																																																																									1
AAAATA	1																																																																																																																																																									1
AAACCT	1			1	1	1	1			1	1																																																																																																																																															7
AAAGAC	1																																																																																																																																																									1
AAAGGA	1																																																																																																																																																									1
AAATGA	1																																																																																																																																																									1
AACAAT	1																																																																																																																																																									1
AACCAA				1																																																																																																																																																						1
AACCTA	2									1																																																																																																																																																3
AACCTG	1																																																																																																																																																									1
AAGAAC		1																																																																																																																																																								1
AAGATG	1																																																																																																																																																									1
AATACT	1																																																																																																																																																									1
AATATA	1	1																																																																																																																																																								2
AATATT	2																																																																																																																																																									2
AATCTG	1																																																																																																																																																									1
AATGAT		1																																																																																																																																																								1
ACAGGA	1																																																																																																																																																									1
ACCACA	1																																																																																																																																																									1
ACCACT	1																																																																																																																																																									1
ACTCAA	1																																																																																																																																																									1
AGAAAC						1																																																																																																																																																				1
AGAAAG			1																																																																																																																																																							1
AGAAAT	1																																																																																																																																																									1
AGAACT		1																																																																																																																																																								1
AGAGAT	1	1																																																																																																																																																								2
AGAGGG	1																																																																																																																																																									1
AGATCA	2																																																																																																																																																									2
AGATCC	2			1																																																																																																																																																						3
AGATGA	1																																																																																																																																																									1
AGATGT	1																																																																																																																																																									1
AGGAAA		1																																																																																																																																																								1
AGGAAT	2																																																																																																																																																									2
AGGACA		1																																																																																																																																																								1
AGGACC	1																																																																																																																																																									1
AGGAGC	1																																																																																																																																																									1
AGTAAT	1																																																																																																																																																									1
ATAAAA	1																																																																																																																																																									1
ATAAAT	2																																																																																																																																																									2
ATAATG	1																																																																																																																																																									1
ATAGGC	1																																																																																																																																																									1
ATATTT	1																																																																																																																																																									1
ATCAGA		1																																																																																																																																																								1
ATCAGG	1																																																																																																																																																									1
ATCATG	1																																																																																																																																																									1
ATCATT	1																																																																																																																																																									1
ATCCAA					1																																																																																																																																																					1
ATCTAA	1																																																																																																																																																									1
ATCTAG	1																																																																																																																																																									1
ATCTGG			1																																																																																																																																																							1
ATCTTC		1																																																																																																																																																								1
ATGATT	1																																																																																																																																																									1
ATGCCA		1																																																																																																																																																								1
ATTAAA	1																																																																																																																																																									1
ATTATC	1	1																																																																																																																																																								2
ATTCCC	3																																																																																																																																																									3
ATTCTG		1																																																																																																																																																								1
ATTTAT	2																																																																																																																																																									2
ATTTTT	1																																																																																																																																																									1
CAAAAG	1																																																																																																																																																									1
CAAAGC	1																																																																																																																																																									1
CAAATT		1																																																																																																																																																								1
CAACAG	1	2	1																																																																																																																																																							4
CAAGAA		1																																																																																																																																																								1
CAAGAG	1																																																																																																																																																									1
CAAGAT	2																																																																																																																																																									2
CAAGTA	1																																																																																																																																																									1
CAATAA	3																																																																																																																																																									3
CAATGC		1																																																																																																																																																								1
CAGAAC	1																																																																																																																																																									1
CAGAAT	1																																																																																																																																																									1
CAGCTC		1																																																																																																																																																								1
CAGGAA					1	1						2																																																																																																																																														4
CAGGAC				1										1																																																																																																																																												2
CAGGAT	1																																																																																																																																																									1
CAGGTC	1																																																																																																																																																									1
CAGTTC	1																																																																																																																																																									1
CATGGA	1																																																																																																																																																									1
CATGGT						1																																																																																																																																																				1
CCAACA			1																																																																																																																																																							1
CCAGCT	1																																																																																																																																																									1
CCAGGA						1																																																																																																																																																				1
CCATCA	1																																																																																																																																																									1
CCTAAA	3	1	1	1	2	1	2	1		2	2																																																																																																																																															16
CCTCCC		1																																																																																																																																																								1
CCTGAG		1																																																																																																																																																								1
CCTGTT	1																																																																																																																																																									1
CCTTTC	1																																																																																																																																																									1
CGATGA	1																																																																																																																																																									1
CGGTGG	1																																																																																																																																																									1
CGTTCA			1																																																																																																																																																							1
CGTTCT			1																																																																																																																																																							1
CTAAAG	1																																																																																																																																																									1
CTACTC	1																																																																																																																																																									1
CTACTT	1																																																																																																																																																									1
CTGAAC	1																																																																																																																																																									1
CTGAGC		1																																																																																																																																																								1
CTGAGG			1																																																																																																																																																							1
CTGATT		1																																																																																																																																																								1
CTGCTC		1																																																																																																																																																								1
CTGGAG			1																																																																																																																																																							1
CTTCAT	1																																																																																																																																																									1
CTTCCT	1																																																																																																																																																									1
CTTCTA	1																																																																																																																																																									1
CTTGAA		1																																																																																																																																																								1
CTTGAT		1																																																																																																																																																								1
CTTTCT				1																																																																																																																																																						1
GAAAGA	1																																																																																																																																																									1
GAAATA	1																																																																																																																																																									1
GAACAA	2																																																																																																																																																									2
GAACCT	1																																																																																																																																																									1
GAAGAG	1						1																																																																																																																																																			2
GAAGAT			1																																																																																																																																																							1
GAATCT		3	1																																																																																																																																																							4
GAGATC	1																																																																																																																																																									1
GAGGAT	1																																																																																																																																																									1
GATAAT			1																																																																																																																																																							1
GATCAC		1																																																																																																																																																								1
GATCAG	1																																																																																																																																																									1
GATCCT			1																																																																																																																																																							1
GATCTT	1																																																																																																																																																									1
GATGAC	1																																																																																																																																																									1
GATGTA	1																																																																																																																																																									1
GATGTT	1																																																																																																																																																									1
GCAGCT	2																																																																																																																																																									2
GCAGTT	1																																																																																																																																																									1
GCTCAA									1																																																																																																																																																	1
GGAGCA															1																																																																																																																																											1
GGAGCT		1																																																																																																																																																								1
GGATGA		1																																																																																																																																																								1
GGTGGA	1																																																																																																																																																									1
GGTTTA	5	3	1		2		2	2	1	1																																																																																																																																																17
GGTTTT	1	1																																																																																																																																																								2
GTAATG	1																																																																																																																																																									1
GTAGTG			1	1				1																																																																																																																																																		3
GTAGTT	2	1																																																																																																																																																								3
GTGGAG		1																																																																																																																																																								1
GTGGAT	1																																																																																																																																																									1
GTGGTA	1	2																																																																																																																																																								3
GTTCAA		1																																																																																																																																																								1
GTTCTT	1																																																																																																																																																									1
GTTGAA	2																																																																																																																																																									2
GTTGTA	2																																																																																																																																																									2
GTTTAG		1	2	1		1																																																																																																																																																				5
GTTTTG		1																																																																																																																																																								1
TAAATA	1																																																																																																																																																									1
TAACAA	1																																																																																																																																																									1
TAATAG	1																																																																																																																																																									1
TAATGG		1																																																																																																																																																								1
TAGTAA	1																																																																																																																																																									1
TAGTAT		1																																																																																																																																																								1
TAGTTC		1																																																																																																																																																								1
TATAAA	1																																																																																																																																																									1
TATAAC		1																																																																																																																																																								1
TATATT	3																																																																																																																																																									3
TATCAT	1																																																																																																																																																									1
TATTAA	1	1																																																																																																																																																								2
TATTAG	2																																																																																																																																																									2
TATTCA	1																																																																																																																																																									1
TATTGG	1		1																																																																																																																																																							2
TATTTA	1																																																																																																																																																									1
TATTTT	2																																																																																																																																																									2
TCAAGA	1	1																																																																																																																																																								2
TCAAGT	1																																																																																																																																																									1
TCACGT			1																																																																																																																																																							1
TCAGAT	1																																																																																																																																																									1
TCAGGA			1																																																																																																																																																							1
TCAGGG	1																																																																																																																																																									1
TCATAA	1																																																																																																																																																									1
TCATCG	1																																																																																																																																																									1
TCATCT	1																																																																																																																																																									1
TCATTA			1																																																																																																																																																							1
TCCATG	1																																																																																																																																																									1
TCCTAA										1																																																																																																																																																1
TCCTCT	1																																																																																																																																																									1
TCCTGT		1																																																																																																																																																								1
TCTCTT		1																																																																																																																																																								1
TCTGAA	1																																																																																																																																																									1
TCTTCA	1																																																																																																																																																									1
TCTTCC	2		1																																																																																																																																																							3
TCTTGA	1		1																																																																																																																																																							2
TCTTGT	1		1																																																																																																																																																							2
TCTTTC	1																																																																																																																																																									1
TCTTTT	1																																																																																																																																																									1
TGAAAC	1																																																																																																																																																									1
TGAACT	1																																																																																																																																																									1
TGACGA	1																																																																																																																																																									1
TGAGCC	1	1																																																																																																																																																								2
TGATCT	1																																																																																																																																																									1
TGCATG	1																																																																																																																																																									1
TGCCAA	1																																																																																																																																																									1
TGGAAT	2																																																																																																																																																									2
TGGAGA	1																																																																																																																																																									1
TGGTAA	1																																																																																																																																																									1
TGGTTT	1																																																																																																																																																									1
TGTAGT	1																																																																																																																																																									1
TGTTAC		1																																																																																																																																																								1
TTAATA	2																																																																																																																																																									2
TTAGGT	3		1							1																																																																																																																																																5
TTAGTA	1																																																																																																																																																									1
TTATAT	1																																																																																																																																																									1
TTATCT	1																																																																																																																																																									1
TTATGA	1																																																																																																																																																									1
TTATTT	2																																																																																																																																																									2
TTCATC	1																																																																																																																																																									1
TTCCAG		1																																																																																																																																																								1
TTCTTG	1																																																																																																																																																									1
TTGAAA	1																																																																																																																																																									1
TTGAAT		1																																																																																																																																																								1
TTGGCA						1																																																																																																																																																				1
TTGTTC	1																																																																																																																																																									1
TTGTTT	1																																																																																																																																																									1
TTTAGG	3	4	6	3				1	1		3																																																																																																																																															21
TTTCAG		1																																																																																																																																																								1
TTTCAT	1																																																																																																																																																									1
TTTGTT	1																																																																																																																																																									1
TTTTCT	2																																																																																																																																																									2
TTTTGG		1																																																																																																																																																								1
TTTTTC	1																																																																																																																																																									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	7	7	4	8	8	5	1	3	5			1			1						1					2								1		2			1					1	2										3		2	7						1																		1																				1																																		2	77
AC/GT	-	-	-			1																																																																																																																																																				1
AG/CT	-	-	-	12	1	3	1	2						2																																																																																																																																												21
AT/AT	-	-	-	95	47	32	23	41	26	23	13	11	8	10	6	5	3	3	1	1	1			1								1																																																																																																																										351
CG/CG	-	-	-	3																																																																																																																																																						3
AAC/GTT	-	-	24	17	10	7	3	2		1	2							1																																																																																																																																								67
AAG/CTT	-	-	31	17	13	4	1	2	1		1	2	1																																																																																																																																													73
AAT/ATT	-	-	163	88	71	59	26	25	13	12	15	1	4	2	1				1																																																																																																																																							481
ACC/GGT	-	-	7	5	2		4																																																																																																																																																			18
ACT/AGT	-	-	35	12	14	10	5	1	2	1	1	1	2	1	1		1			1							1																																																																																																																															89
AGC/CTG	-	-	2	4	3	1	1	1																																																																																																																																																		12
AGG/CCT	-	-	12	8	4	3	3	1		2		1	1																																																																																																																																													35
ATC/ATG	-	-	55	20	14	9	2	3		1	1																																																																																																																																															105
AAAC/GTTT	-	1																																																																																																																																																								1
AAAG/CTTT	-	5	1					1																																																																																																																																																		7
AAAT/ATTT	-	43	10	4	1		1																																																																																																																																																			59
AAGG/CCTT	-	1	1																																																																																																																																																							2
AATC/ATTG	-	2	1																																																																																																																																																							3
AATG/ATTC	-	1																																																																																																																																																								1
AATT/AATT	-	12	4																																																																																																																																																							16
ACAT/ATGT	-		1																																																																																																																																																							1
AGAT/ATCT	-		1																																																																																																																																																							1
ATGC/ATGC	-	14	4	1	1																																																																																																																																																					20
AAAAC/GTTTT	5																																																																																																																																																									5
AAAAG/CTTTT	14																																																																																																																																																									14
AAAAT/ATTTT	23	5																																																																																																																																																								28
AAAGG/CCTTT	1	2																																																																																																																																																								3
AAAGT/ACTTT	1																																																																																																																																																									1
AAATC/ATTTG	5																																																																																																																																																									5
AAATG/ATTTC	1																																																																																																																																																									1
AAATT/AATTT	23																																																																																																																																																									23
AACAC/GTGTT	1																																																																																																																																																									1
AACAT/ATGTT																								1																																																																																																																																		1
AACTT/AAGTT	1																																																																																																																																																									1
AAGAG/CTCTT	1																																																																																																																																																									1
AAGGG/CCCTT	1																																																																																																																																																									1
AATAC/ATTGT	1																																																																																																																																																									1
AATAT/ATATT	16	1																																																																																																																																																								17
AATCC/ATTGG	2																																																																																																																																																									2
AATTC/AATTG	3																																																																																																																																																									3
ACGAG/CGTCT	2	1																																																																																																																																																								3
ACTAT/AGTAT	1																																																																																																																																																									1
ATATC/ATATG	2																																																																																																																																																									2
ATCCC/ATGGG	1																																																																																																																																																									1
AAAAAC/GTTTTT	2																																																																																																																																																									2
AAAAAG/CTTTTT	4																																																																																																																																																									4
AAAAAT/ATTTTT	8																																																																																																																																																									8
AAAACC/GGTTTT	2	3		1																																																																																																																																																						6
AAAAGC/CTTTTG	1																																																																																																																																																									1
AAAAGG/CCTTTT	1	1																																																																																																																																																								2
AAAATG/ATTTTC	2																																																																																																																																																									2
AAAATT/AATTTT	1																																																																																																																																																									1
AAACAG/CTGTTT						1																																																																																																																																																				1
AAACCT/AGGTTT	17	9	11	6	5	3	5	4	2	6	6																																																																																																																																															74
AAACTC/AGTTTG	1																																																																																																																																																									1
AAACTG/AGTTTC	1	1																																																																																																																																																								2
AAAGAC/CTTTGT	1																																																																																																																																																									1
AAAGAG/CTCTTT	2	1	1	1																																																																																																																																																						5
AAAGAT/ATCTTT	1																																																																																																																																																									1
AAAGCC/CTTTGG	1																																																																																																																																																									1
AAAGCT/AGCTTT	1																																																																																																																																																									1
AAAGGG/CCCTTT	1																																																																																																																																																									1
AAATAG/ATTTCT	2																																																																																																																																																									2
AAATAT/ATATTT	13	1																																																																																																																																																								14
AAATCC/ATTTGG					1																																																																																																																																																					1
AAATCT/AGATTT	1																																																																																																																																																									1
AAATTC/AATTTG		2																																																																																																																																																								2
AAATTG/AATTTC	1																																																																																																																																																									1
AACAAG/CTTGTT	6	2	1																																																																																																																																																							9
AACAAT/ATTGTT	5																																																																																																																																																									5
AACACC/GGTGTT			1																																																																																																																																																							1
AACAGC/CTGTTG	1	2	1																																																																																																																																																							4
AACAGG/CCTGTT	2	1			1	1						2																																																																																																																																														7
AACAGT/ACTGTT		1																																																																																																																																																								1
AACATC/ATGTTG	1																																																																																																																																																									1
AACCAC/GGTTGT	1																																																																																																																																																									1
AACCAG/CTGGTT	1																																																																																																																																																									1
AACCTG/AGGTTC	3																																																																																																																																																									3
AACGAG/CGTTCT			1																																																																																																																																																							1
AACGTG/ACGTTC			2																																																																																																																																																							2
AACTAC/AGTTGT	5	1																																																																																																																																																								6
AACTAG/AGTTCT		2																																																																																																																																																								2
AACTAT/AGTTAT		1																																																																																																																																																								1
AACTGC/AGTTGC	1																																																																																																																																																									1
AACTGG/AGTTCC	1	1																																																																																																																																																								2
AACTTC/AAGTTG	2																																																																																																																																																									2
AACTTG/AAGTTC	2	2																																																																																																																																																								4
AAGAGC/CTCTTG	1																																																																																																																																																									1
AAGAGG/CCTCTT	5		1				1																																																																																																																																																			7
AAGATC/ATCTTG	8	2	1																																																																																																																																																							11
AAGATG/ATCTTC	6	1	1																																																																																																																																																							8
AAGCTC/AGCTTG									1																																																																																																																																																	1
AAGGAC/CCTTGT		1																																																																																																																																																								1
AAGTAC/ACTTGT	1																																																																																																																																																									1
AAGTAG/ACTTCT	2																																																																																																																																																									2
AATACC/ATTGGT	1		1																																																																																																																																																							2
AATACT/AGTATT	4	1																																																																																																																																																								5
AATAGG/ATTCCT	2																																																																																																																																																									2
AATAGT/ACTATT	3																																																																																																																																																									3
AATATG/ATATTC	1																																																																																																																																																									1
AATATT/AATATT	5	1																																																																																																																																																								6
AATCAG/ATTCTG	1	3																																																																																																																																																								4
AATCAT/ATGATT	3																																																																																																																																																									3
AATCCT/AGGATT										1																																																																																																																																																1
AATCTG/AGATTC	3	3	1																																																																																																																																																							7
AATGAT/ATCATT	4	2	2																																																																																																																																																							8
AATGCC/ATTGGC	1	2				1																																																																																																																																																				4
AATGGG/ATTCCC	3																																																																																																																																																									3
AATGGT/ACCATT	2	1																																																																																																																																																								3
AATTCC/AATTGG	2																																																																																																																																																									2
ACATCC/ATGTGG	1																																																																																																																																																									1
ACATCT/AGATGT	2																																																																																																																																																									2
ACATGC/ATGTGC	1																																																																																																																																																									1
ACATGG/ATGTCC	2																																																																																																																																																									2
ACCACT/AGTGGT	2	2	1	1				1																																																																																																																																																		7
ACCAGG/CCTGGT	1			1		1								1																																																																																																																																												4
ACCATC/ATGGTG	1																																																																																																																																																									1
ACCATG/ATGGTC						1																																																																																																																																																				1
ACCCTG/AGGGTC	1																																																																																																																																																									1
ACCGCC/CGGTGG	1																																																																																																																																																									1
ACCTCC/AGGTGG	1	1																																																																																																																																																								2
ACCTGG/AGGTCC	1																																																																																																																																																									1
ACGATC/ATCGTG		1																																																																																																																																																								1
ACGATG/ATCGTC	4																																																																																																																																																									4
ACTCCT/AGGAGT	1																																																																																																																																																									1
AGAGAT/ATCTCT	1	1																																																																																																																																																								2
AGAGGG/CCCTCT	1																																																																																																																																																									1
AGATCC/ATCTGG	2		1	1																																																																																																																																																						4
AGATCG/ATCTCG	1																																																																																																																																																									1
AGATCT/AGATCT	1																																																																																																																																																									1
AGATGG/ATCTCC	1																																																																																																																																																									1
AGCAGG/CCTGCT	1	1													1																																																																																																																																											3
AGCCTC/AGGCTG			1																																																																																																																																																							1
AGCCTG/AGGCTC	1	3																																																																																																																																																								4
AGCTCC/AGCTGG	1	2	1																																																																																																																																																							4
AGCTGC/AGCTGC	2																																																																																																																																																									2
AGGATC/ATCCTG	3		2																																																																																																																																																							5
AGGATG/ATCCTC	1	1																																																																																																																																																								2
AGGCAT/ATGCCT	1																																																																																																																																																									1
AGGGGG/CCCCCT		1																																																																																																																																																								1
ATCATG/ATCATG	1																																																																																																																																																									1
