Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_003013265.1/fasta/hub_GCA_003013265.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1539
Total size of examined sequences (bp):           39169872
Total number of identified SSRs:                 8999
Number of SSR containing sequences:              702
Number of sequences containing more than 1 SSR:  472
Number of SSRs present in compound formation:    3378


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	29
2	2711
3	1726
4	600
5	721
6	3212

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5				3		1	1														1																1																																		12
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-										1																																																														1
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																						1																																																	1	2
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		3		4		2				1	1	1		1				1																																																						14
AC	-	-	-	93	53	39	13	3																																																																																	201
AG	-	-	-	48	26	5	2	2																																																																																	83
AT	-	-	-	151	140	141	139	109	65	27	28	18	14	11	6	2	6	1	3	4	1								1																																																												867
CA	-	-	-	104	115	84	24	7																																																																																	334
CG	-	-	-	1																																																																																					1
CT	-	-	-	55	26	7		1																																																																																	89
GA	-	-	-	21	13	4																																																																																			38
GT	-	-	-	113	72	46	12	5	2																																																																																250
TA	-	-	-	85	61	70	92	59	36	16	14	7	10	2	3	2	3	2			1							1																																																													464
TC	-	-	-	28	16	7	1																																																																																		52
TG	-	-	-	133	113	56	20	7	2		1																																																																														332
AAC	-	-	41	14	1																																																																																				56
AAG	-	-	11	1																																																																																					12
AAT	-	-	152	68	25	8	10	6	2	2	3		1	2	1		1		1																1																																																						283
ACA	-	-	15	5																																																																																					20
ACC	-	-	1	4	1																																																																																				6
ACT	-	-	3	2																																																																																					5
AGA	-	-	16	1																																																																																					17
AGC	-	-	9	3	1																																																																																				13
AGG	-	-	3	2																																																																																					5
AGT	-	-	3																																																																																						3
ATA	-	-	40	28	6	1	2								1	1	1																																																																								80
ATC	-	-	1	1																																																																																					2
ATG	-	-	2																																																																																						2
ATT	-	-	66	37	11	5	4	2	1				1	2													1														1																																																131
CAA	-	-	16	4																																																																																					20
CAC	-	-	17	5	1	1		1																																																																																	25
CAG	-	-	167	4																																																																																					171
CAT	-	-	3	2																																																																																					5
CCA	-	-	20	1	1																																																																																				22
CCG	-	-	3																																																																																						3
CCT	-	-	9	1	1																																																																																				11
CGA	-	-		1																																																																																					1
CGC	-	-	2																																																																																						2
CGG	-	-	2																																																																																						2
CTA	-	-	1																																																																																						1
CTC	-	-	13	2	1																																																																																				16
CTG	-	-	11	8	1																																																																																				20
CTT	-	-	7																																																																																						7
GAA	-	-	16																																																																																						16
GAC	-	-	1																																																																																						1
GAG	-	-	16	1																																																																																					17
GAT	-	-	3	3	1																																																																																				7
GCA	-	-	12	6	1																																																																																				19
GCT	-	-	10	1																																																																																					11
GGA	-	-	18	1	1																																																																																				20
GGC	-	-	1																																																																																						1
GGT	-	-	11	10	1	1																																																																																			23
GTA	-	-	2																						1																																																																3
GTG	-	-	8	1																																																																																					9
GTT	-	-	20	9	1	1																																																																																			31
TAA	-	-	57	22	14	1	1			1																																																																															96
TAC	-	-	3	2																																																																																					5
TAG	-	-	3	2																																																																																					5
TAT	-	-	69	33	16	5	1	2	1	1	2	1	2								1	1																																																																			135
TCA	-	-	5	1																																																																																					6
TCC	-	-	11	2																																																																																					13
TCG	-	-	1	2																																																																																					3
TCT	-	-	2		1																																																																																				3
TGA	-	-	3	2																																																																																					5
TGC	-	-	10	4	1																																																																																				15
TGG	-	-	6	6																																																																																					12
TGT	-	-	24	5																																																																																					29
TTA	-	-	109	52	15	6	4	3	3	1			1					2																																																																							196
TTC	-	-	25	2																																																																																					27
TTG	-	-	49	22	5	1																																																																																			77
AAAC	-	11	2																																																																																						13
AAAG	-	29	9	3	1		1																																																																																		43
AAAT	-	30	14	4	2																																																																																				50
AACA	-	7	1	2																																																																																					10
AAGA	-	15	2	2																																																																																					19
AAGG	-	4																																																																																							4
AAGT	-	1																																																																																							1
AATA	-	25	9	1	3	1	2	1																																																																																	42
AATC	-	2																																																																																							2
AATG	-		1																																																																																						1
AATT	-	2		1																																																																																					3
ACAA	-	5	1																																																																																						6
ACAG	-		1																																																																																						1
ACAT	-	2																																																																																							2
ACCA	-	2																																																																																							2
ACGC	-	2																																																																																							2
AGAA	-	9	6	1																																																																																					16
AGAT	-	1	1		1																																																																																				3
AGGA	-	1																																																																																							1
AGGG	-	1																																																																																							1
AGTA	-	2																																																																																							2
ATAA	-	9	3																																																																																						12
ATAG	-	2		1																																																																																					3
ATCT	-	1		1																																																																																					2
ATGA	-	2																																																																																							2
ATTA	-	1	2																																																																																						3
ATTC	-		2																																																																																						2
ATTG	-	1																																																																																							1
ATTT	-	11	4																																																																																						15
CAAA	-	8	1																																																																																						9
CACC	-	1																																																																																							1
CACG	-	1																																																																																							1
CACT	-		1																																																																																						1
CAGA	-	1																																																																																							1
CATA	-	2																																																																																							2
CCAC	-	1																																																																																							1
CCCT	-	1																																																																																							1
CCTC	-	2	1																																																																																						3
CCTT	-	2	2																																																																																						4
CTAA	-	1																																																																																							1
CTCC	-	1	1																																																																																						2
CTTC	-	1																																																																																							1
CTTT	-	10	3				1																																																																																		14
GAAA	-	12		1																																																																																					13
GAAG	-	3																																																																																							3
GATA	-	1	1																																																																																						2
GCAA	-	1																																																																																							1
GCGT	-	1	1																																																																																						2
GCTT	-	1																																																																																							1
GGAA	-	8	1																																																																																						9
GGAG	-	6																																																																																							6
GGGA	-		1																																																																																						1
GGTT	-	1																																																																																							1
GTGA	-	2																																																																																							2
GTGC	-	2																																																																																							2
GTTA	-	2																																																																																							2
GTTG	-	1																																																																																							1
GTTT	-	7	2																																																																																						9
TAAA	-	16																																																																																1							17
TAAT	-		1																																																																																						1
TACA	-			1																																																																																					1
TATC	-	1																																																																																							1
TATG	-	2																																																																																							2
TATT	-	19	6	2	1																																																																																				28
TCAC	-	1	1																																																																																						2
TCAT	-	2	2																																																																																						4
TCCA	-	1																																																																																							1
TCCC	-	2																																																																																							2
TCCT	-	3																																																																																							3
TCTT	-	7	2	1																																																																																					10
TGAA	-	1																																																																																							1
TGCA	-	1																																																																																							1
TGCT	-	1																																																																																							1
TGTA	-	3																																																																																							3
TGTT	-	8	1	1																																																																																					10
TTAT	-	21	6	4	1	1		1																																																																																	34
TTCC	-	5	1																																																																																						6
TTCT	-	4	2																																																																																						6
TTGT	-	14	3																																																																																						17
TTTA	-	29	5	2																																																																																					36
TTTC	-	23	6	1	1																																																																																				31
TTTG	-	17	3	1																																																																																					21
AAAAC	8																																																																																								8
AAAAG	27	1																																																																																							28
AAAAT	30	6	3												1	1																																																																									41
AAACA	6	1																																																																																							7
AAACG	1																																																																																								1
AAACT	1																																																																																								1
AAAGA	6	1	2																																																																																						9
AAAGG	1																																																																																								1
AAATA	11																																																																																								11
AAATC	1																																																																																								1
AAATT	1																																																																																								1
AACAA	6																																																																																								6
AACAC	2																																																																																								2
AACAT	1																																																																																								1
AACCA	1																																																																																								1
AACGT		1																																																																																							1
AACTC	5																																																																																								5
AAGAA	11	2																																																																																							13
AAGAG	1																																																																																								1
AAGCA	1																																																																																								1
AAGGA	8																																																																																								8
AAGGC	4																																																																																								4
AAGGG	1																																																																																								1
AAGGT	1																																																																																								1
AAGTG		1																																																																																							1
AATAA	12	2	2																																																																																						16
AATAC	1																																																																																								1
AATGA		1																																																																																							1
AATGC	1																																																																																								1
ACAAA	4			1																																																																																					5
ACAAT	2																																																																																								2
ACACA	3																																																																																								3
ACAGC	1																																																																																								1
ACCCC	2																																																																																								2
ACCCT	5																																																																																								5
ACTCC	1																																																																																								1
ACTTC	1																																																																																								1
AGAAA	10	1																																																																																							11
AGAAC	1																																																																																								1
AGAGA	3																																																																																								3
AGAGG	3																																																																																								3
AGATT	1																																																																																								1
AGCAA	1																																																																																								1
AGGAA	2																																																																																								2
AGGAG	1																																																																																								1
AGGCG	1																																																																																								1
AGGTA	1	1																																																																																							2
AGGTC			1	1																																																																																					2
AGGTG	1																																																																																								1
AGTTT	1																																																																																								1
ATAAA	1																																																																																								1
ATAAT	1																																																																																								1
ATACG	1																																																																																								1
ATATT	1																																																																																								1
ATGAT		1																																																																																							1
ATGTG	1																																																																																								1
ATGTT	1																																																																																								1
ATTAT	1																																																																																								1
ATTCC	2																																																																																								2
ATTTA	1																																																																																								1
ATTTC	1																																																																																								1
ATTTT	11	4																																																																																							15
CAAAA	16		1																																																																																						17
CAACA	1																																																																																								1
CAACC	1																																																																																								1
CACAA	1																																																																																								1
CACAC	1																																																																																								1
CACCC	1																																																																																								1
CAGCA	1																																																																																								1
CATTG	1																																																																																								1
CATTT	2																																																																																								2
CCACG	2																																																																																								2
CCCAT	1																																																																																								1
CCCCG	1																																																																																								1
CCCCT	2																																																																																								2
CCCTG		1																																																																																							1
CCCTT	5																																																																																								5
CCGCC	1																																																																																								1
CCTAA	34	5																																																																																							39
CCTCA	1																																																																																								1
CCTCC	5																																																																																								5
CCTTA		1																																																																																							1
CCTTC	1	1																																																																																							2
CCTTT	3																																																																																								3
CGACG	1																																																																																								1
CGGCA	1																																																																																								1
CGGGA	1																																																																																								1
CGTGT	2																																																																																								2
CTCAA	1																																																																																								1
CTCAT	1																																																																																								1
CTCCC	2																																																																																								2
CTCTC	1																																																																																								1
CTCTT	1	1																																																																																							2
CTGCA	1																																																																																								1
CTGCT	1																																																																																								1
CTGTT	1																																																																																								1
CTTCA		2																																																																																							2
CTTCC	2																																																																																								2
CTTTA	1																																																																																								1
CTTTC	5																																																																																								5
CTTTT	6																																																																																								6
GAAAA	15																																																																																								15
GAAAG	3	1																																																																																							4
GAAAT	1																																																																																								1
GAAGA	1																																																																																								1
GAAGG	1																																																																																								1
GACCT	2																																																																																								2
GAGGA	2																																																																																								2
GAGGT	1																																																																																								1
GAGTT	1																																																																																								1
GATAT				1																																																																																					1
GCAAA		1																																																																																							1
GCACC	1																																																																																								1
GCCTG	1																																																																																								1
GCCTT	2																																																																																								2
GGAAA	3																																																																																								3
GGAAG	1																																																																																								1
GGAAT	3																																																																																								3
GGACG	1																																																																																								1
GGAGA	1																																																																																								1
GGAGG	21																																																																																								21
GGCAA	1																																																																																								1
GGGAA	2																																																																																								2
GGGAG	2																																																																																								2
GGGGA	4																																																																																								4
GGGGT	1																																																																																								1
GGTCA	5		1																																																																																						6
GGTGA	1																																																																																								1
GGTGT	1	1																																																																																							2
GGTTA	26	2	2																																																																																						30
GTGAA	1																																																																																								1
GTGAT	1																																																																																								1
GTGCA		1																																																																																							1
GTGGA	1																																																																																								1
GTGTG	3																																																																																								3
GTGTT	1																																																																																								1
GTTAG	1																																																																																								1
GTTTC	1																																																																																								1
GTTTT	8																																																																																								8
TAAAA	2																																																																																								2
TAATT	1																																																																																								1
TACAA	1																																																																																								1
TACAC		1																																																																																							1
TACAG	1																																																																																								1
TACAT	1																																																																																								1
TAGGG	4																																																																																								4
TAGGT	1																																																																																								1
TATAA	1																																																																																								1
TATTT	4																																																																																								4
TCACA	1																																																																																								1
TCACT	1																																																																																								1
TCCCC	2																																																																																								2
TCCCT	2																																																																																								2
TCCTC	2																																																																																								2
TCCTT	3		1																																																																																						4
TCGCA	1																																																																																								1
TCGTT	1																																																																																								1
TCTAA	1																																																																																								1
TCTCC	2																																																																																								2
TCTTC	2																																																																																								2
TCTTT	6	1																																																																																							7
TGCAA	2																																																																																								2
TGCAC	2																																																																																								2
TGCCC	1																																																																																								1
TGGGG	1																																																																																								1
TGGTG		4																																																																																							4
TGTAA	1																																																																																								1
TGTAG	1																																																																																								1
TGTTG	2																																																																																								2
TGTTT	3																																																																																								3
TTAGG	6																																																																																								6
TTATT	6	1																																																																																							7
TTCAC	1																																																																																								1
TTCCC	2																																																																																								2
TTCCT	2																																																																																								2
TTCGC	1																																																																																								1
TTCGT	1																																																																																								1
TTCTG	1																																																																																								1
TTCTT	4	2																																																																																							6
TTGAA	1																																																																																								1
TTGCA	1																																																																																								1
TTGCT	1																																																																																								1
TTGTG	2																																																																																								2
TTGTT	4	1																																																																																							5
TTTAT	13																																																																																								13
TTTCC	3																																																																																								3
TTTCG	1																																																																																								1
TTTCT	10	1	1																																																																																						12
TTTGC	3																																																																																								3
TTTGT	4																																																																																								4
TTTTA	29	1																																																																																							30
TTTTC	22	1	1																																																																																						24
TTTTG	26	4	1																																																																																						31
AAAAAG	16	3	5	2	1	1																																																																																			28
AAAAAT	4	1																																																																																							5
AAAACA	1																																																																																								1
AAAACG	1																																																																																								1
AAAAGA	4				1				1																																																																																6
AAAAGG	4																																																																																								4
AAAATA	2																																																																																								2
AAAATG	3																																																																																								3
AAAATT	1																																																																																								1
AAACAG		1																																																																																							1
AAAGAA	5																																																																																								5
AAAGAG	3																																																																																								3
AAAGCA	1																																																																																								1
AAAGGA	1																																																																																								1
AAATAA	4																																																																																								4
AACACC	1																																																																																								1
AACCAC	1																																																																																								1
AACCCT	106	39	24	29	19	13	9	11	5	9	5	4	4	2	2	5	4	1	2	3		1	4	2	2		1				1						1																								1																												309
AAGAAA	3																																																																																								3
AAGGAC	1																																																																																								1
AATAAA	4																																																																																								4
AATAAC	1																																																																																								1
AATGGC	1																																																																																								1
AATTAA	1																																																																																								1
AATTCT	1																																																																																								1
ACAAAA	1																																																																																								1
ACAATA	1																																																																																								1
ACACAA	2																																																																																								2
ACACAG	1																																																																																								1
ACACAT	1																																																																																								1
ACAGCA			1																																																																																						1
ACATCG	1																																																																																								1
ACCACG	1																																																																																								1
ACCCCC	1																																																																																								1
ACCCTA	27	23	20	13	9	4	7	6	4	3	3	1	4	2	5	1	1	1	2	2			1	1	1	1		1							1																																																						144
ACTGTT	1																																																																																								1
AGAAAA	4																																																																																								4
AGAATG	1																																																																																								1
AGAGAA	2																																																																																								2
AGCGGG	1																																																																																								1
AGCGGT	1																																																																																								1
AGCTGA	1																																																																																								1
AGGCAA	1																																																																																								1
AGGGTC	4	3																																																																																							7
AGGGTT	8	5	9	7	3	1	2	5	1		2	2	1	1	1				1			1	1		1															1																																																	53
AGGTCA	2																																																																																								2
AGTCGT	1																																																																																								1
ATAAAA	2																																																																																								2
ATACAC	1																																																																																								1
ATACAT	2																																																																																								2
ATATAC	3																																																																																								3
ATATGT	1																																																																																								1
ATATTA	1																																																																																								1
ATCCAT	3																																																																																								3
ATCGGG	1																																																																																								1
ATGGAT	8																																																																																								8
ATGTAT	1																																																																																								1
ATTTAT	1																																																																																								1
ATTTTT	2																																																																																								2
CAAAAA	1																																																																																								1
CAAAAT	1																																																																																								1
CAACAC	1																																																																																								1
CAACAG	1																																																																																								1
CAATAA	1																																																																																								1
CACAAG	1																																																																																								1
CACACG	2																																																																																								2
CACATA	1																																																																																								1
CACCAG	2																																																																																								2
CACTAA	1																																																																																								1
CAGCAA	1																																																																																								1
CCACCG	2																																																																																								2
CCCTAA	86	57	47	39	36	27	9	23	13	8	16	8	8	7	4	5	4		2	2	2	2	1	1	1	1		1				1				1		1									2		1							1									1																								418
CCCTCT	1																																																																																								1
CCGGCT	1																																																																																								1
CCTAAC	73	43	48	34	28	23	13	15	11	13	8	12	6	4	4	7	1	1	2	5	2	1	1	2		1	1	1	1	1							1				1																			1																													365
CCTGAC	2	1																																																																																							3
CGCATA	1																																																																																								1
CGTGTG	1	1																																																																																							2
CTAACC	20	20	16	20	12	8	9	5	3	4	5	4	3	5		3						2	1			1		1	2			1											1																																														146
CTACTG	1																																																																																								1
CTGACC	1																																																																																								1
CTGCCA	1																																																																																								1
CTGTTG	1																																																																																								1
CTTATT	1																																																																																								1
CTTTTC	1																																																																																								1
CTTTTT	2		2																																																																																						4
GAAAAA	4																																																																																								4
GAGGAA	2																																																																																								2
GAGGGC	1																																																																																								1
GATGAC	2																																																																																								2
GATGAG	1																																																																																								1
GCAACA	1																																																																																								1
GCAGCC		1																																																																																							1
GCAGTG	1																																																																																								1
GGCAGT	2																																																																																								2
GGCCGG	1																																																																																								1
GGCGGT	2																																																																																								2
GGGTCA	5	4		2				1																																																																																	12
GGGTTA	132	60	52	30	25	19	19	13	9	4	8	6	1	5	5	1	3	4	4	2	3	1	2	2	1		1													1																																									1								414
GGGTTC	1																																																																																								1
GGTCAA	2																																																																																								2
GGTCAG	8	2	3																																																																																						13
GGTCGG	1																																																																																								1
GGTTAG	70	49	42	34	35	19	14	13	18	13	10	4	6	4	3	4	4	3	3	4	4	1		3		2	1	1			1					1			2			1													1	1													1																				372
GTCAGG	2																																																																																								2
GTCGTG	4																																																																																								4
GTGGGG	1																																																																																								1
GTGTAC	1																																																																																								1
GTGTGC	1																																																																																								1
GTTAGG	25	21	17	16	16	11	4	7	4	2	1	6	5	2	2						1		1		1				3	1	1		2	1												1		1																																									152
GTTATT		1																																																																																							1
GTTTTT	1																																																																																								1
TAAAAA	6																																																																																								6
TAACCC	17	15	5	10	8	8	4	5	3	2	2		2	2		2		1											1			1					1																																																				89
TAGGGT	17	12	16	10	10	3	5	3	3	5	2		1	3	1	1						1					1					1						1																																																			96
TAGTAA		1																																																																																							1
TATACA	1																																																																																								1
TATATG	1																																																																																								1
TATATT	4	1																																																																																							5
TATCTA				1																																																																																					1
TATGGT	1																																																																																								1
TATTTA	1																																																																																								1
TATTTT	2																																																																																								2
TCACCG	1																																																																																								1
TCAGGG			1																																																																																						1
TCCTCA	1																																																																																								1
TCTTTT	2	1																																																																																							3
TGACCC	2	1																																																																																							3
TGACCT	3																																																																																								3
TGAGGA	1																																																																																								1
TGCTGT	1																																																																																								1
TGTATA	1																																																																																								1
TGTCGG	1																																																																																								1
TGTGCG					1																																																																																				1
TGTGGG	1																																																																																								1
TGTGTT	1																																																																																								1
TGTTAT	1																																																																																								1
TGTTGC	2	1																																																																																							3
TTAGGG	55	40	34	34	31	21	14	9	12	10	8	5	6	4	7	5	4	2	1				2	3		1	1			1				1										1						1																																							313
TTATTC	1																																																																																								1
TTCCTC	2																																																																																								2
TTCGTT	1																																																																																								1
TTCTTT	2																																																																																								2
TTGGCC	1																																																																																								1
TTGGTG	1																																																																																								1
TTGTGT	1																																																																																								1
TTGTTA	1																																																																																								1
TTGTTT	1																																																																																								1
TTTATA	1																																																																																								1
TTTATT	6																																																																																								6
TTTCTT	2		2		1																																																																																				5
TTTGCT	1																																																																																								1
TTTGGT	2	1																																																																																							3
TTTGTT	1																																																																																								1
TTTTAT	1																																																																																								1
TTTTCC	1																																																																																								1
TTTTCT	1	1	1			1																																																																																			4
TTTTTA	6																																																																																								6
TTTTTC	16	8	1	3	1																																																																																				29
TTTTTG	1																																																																																								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5	3		4	3	2	1	1		1	1	1		1				1				1																1																																		26
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-										1												1																																																	1	3
AC/GT	-	-	-	443	353	225	69	22	4		1																																																																														1117
AG/CT	-	-	-	152	81	23	3	3																																																																																	262
AT/AT	-	-	-	236	201	211	231	168	101	43	42	25	24	13	9	4	9	3	3	4	2							1	1																																																												1331
CG/CG	-	-	-	1																																																																																					1
AAC/GTT	-	-	165	59	7	2																																																																																			233
AAG/CTT	-	-	77	4	1																																																																																				82
AAT/ATT	-	-	493	240	87	26	22	13	7	5	5	1	5	4	2	1	2	2	1		1	1					1								1						1																																																921
ACC/GGT	-	-	63	27	4	2		1																																																																																	97
ACG/CGT	-	-	2	3																																																																																					5
ACT/AGT	-	-	15	6																					1																																																																22
AGC/CTG	-	-	219	26	4																																																																																				249
AGG/CCT	-	-	70	9	3																																																																																				82
ATC/ATG	-	-	17	9	1																																																																																				27
CCG/CGG	-	-	8																																																																																						8
AAAC/GTTT	-	77	14	4																																																																																					95
AAAG/CTTT	-	109	30	9	2		2																																																																																		152
AAAT/ATTT	-	160	47	13	7	2	2	2																																																																										1							234
AACC/GGTT	-	4																																																																																							4
AACT/AGTT	-	3																																																																																							3
AAGC/CTTG	-	3																																																																																							3
AAGG/CCTT	-	27	4																																																																																						31
AAGT/ACTT	-	3																																																																																							3
AATC/ATTG	-	3																																																																																							3
AATG/ATTC	-	5	5																																																																																						10
AATT/AATT	-	3	3	1																																																																																					7
ACAG/CTGT	-	1	1																																																																																						2
ACAT/ATGT	-	9		1																																																																																					10
ACCC/GGGT	-	2																																																																																							2
ACGC/CGTG	-	6	1																																																																																						7
ACTC/AGTG	-	3	2																																																																																						5
AGAT/ATCT	-	6	2	2	1																																																																																				11
AGGG/CCCT	-	13	3																																																																																						16
ATCC/ATGG	-	1																																																																																							1
ATGC/ATGC	-	1																																																																																							1
AAAAC/GTTTT	85	6	2	1																																																																																					94
AAAAG/CTTTT	117	10	4																																																																																						131
AAAAT/ATTTT	119	14	5												1	1																																																																									140
AAACC/GGTTT	1																																																																																								1
AAACG/CGTTT	5																																																																																								5
AAACT/AGTTT	2																																																																																								2
AAAGC/CTTTG	6	1																																																																																							7
AAAGG/CCTTT	33	1	1																																																																																						35
AAAGT/ACTTT	1																																																																																								1
AAATC/ATTTG	1																																																																																								1
AAATG/ATTTC	4	1																																																																																							5
AAATT/AATTT	3																																																																																								3
AACAC/GTGTT	12																																																																																								12
AACAG/CTGTT	3																																																																																								3
AACAT/ATGTT	2																																																																																								2
AACCC/GGGTT	1																																																																																								1
AACCT/AGGTT	68	7	2																																																																																						77
AACGT/ACGTT		1																																																																																							1
AACTC/AGTTG	7																																																																																								7
AAGAG/CTCTT	8	1																																																																																							9
AAGCG/CGCTT	1																																																																																								1
AAGGC/CCTTG	7																																																																																								7
AAGGG/CCCTT	17	1																																																																																							18
AAGGT/ACCTT	2	2																																																																																							4
AAGTG/ACTTC	4	3																																																																																							7
AATAC/ATTGT	4																																																																																								4
AATAT/ATATT	4																																																																																								4
AATCT/AGATT	2																																																																																								2
AATGC/ATTGC	5																																																																																								5
AATGG/ATTCC	5																																																																																								5
AATGT/ACATT	2																																																																																								2
AATTC/AATTG	1																																																																																								1
ACACC/GGTGT	5	5																																																																																							10
ACACG/CGTGT	2																																																																																								2
ACACT/AGTGT	1	1																																																																																							2
ACAGC/CTGTG	2																																																																																								2
ACAGT/ACTGT	1																																																																																								1
ACATC/ATGTG	3																																																																																								3
ACCCC/GGGGT	5																																																																																								5
ACCCT/AGGGT	9																																																																																								9
ACCGC/CGGTG	1																																																																																								1
ACCTC/AGGTG	4																																																																																								4
ACCTG/AGGTC	7		2	1																																																																																					10
ACGAT/ATCGT	1																																																																																								1
ACGCC/CGTGG	2																																																																																								2
ACGCG/CGCGT	1																																																																																								1
ACGGC/CCGTG	1																																																																																								1
ACGGG/CCCGT	2																																																																																								2
ACTCC/AGTGG	2																																																																																								2
ACTGC/AGTGC	3	1																																																																																							4
AGAGC/CTCTG	1																																																																																								1
AGAGG/CCTCT	12																																																																																								12
AGATG/ATCTC	1																																																																																								1
AGGCC/CCTGG	1																																																																																								1
AGGCG/CCTCG	1																																																																																								1
AGGGC/CCCTG	1	1																																																																																							2
AGGGG/CCCCT	38																																																																																								38
ATATC/ATATG		1		1																																																																																					2
ATCCC/ATGGG	1																																																																																								1
ATCGC/ATGCG	1																																																																																								1
CCCCG/CGGGG	2																																																																																								2
AAAAAC/GTTTTT	7																																																																																								7
AAAAAG/CTTTTT	61	13	11	5	4	2			1																																																																																97
AAAAAT/ATTTTT	39	1																																																																																							40
AAAACC/GGTTTT	2	1																																																																																							3
AAAACG/CGTTTT	2																																																																																								2
AAAAGC/CTTTTG	2																																																																																								2
AAAAGG/CCTTTT	7																																																																																								7
AAAATC/ATTTTG	1																																																																																								1
AAAATG/ATTTTC	3																																																																																								3
AAAATT/AATTTT	2																																																																																								2
AAACAC/GTGTTT	4																																																																																								4
AAACAG/CTGTTT		1																																																																																							1
AAAGAG/CTCTTT	5																																																																																								5
AAAGGC/CCTTTG	1																																																																																								1
AAATAT/ATATTT	7	1																																																																																							8
AACAAT/ATTGTT	5	1																																																																																							6
AACACC/GGTGTT	3																																																																																								3
AACACT/AGTGTT	1																																																																																								1
AACAGC/CTGTTG	7	1	1																																																																																						9
AACAGT/ACTGTT	1																																																																																								1
AACCAC/GGTTGT	1																																																																																								1
AACCAT/ATGGTT	1																																																																																								1
AACCCG/CGGGTT	1																																																																																								1
AACCCT/AGGGTT	636	384	330	276	232	157	109	115	86	73	70	52	47	41	34	34	21	13	17	18	12	10	14	14	7	7	6	5	7	3	3	4	2	2	1	2	3	2	2	2	1	1	1	1		1	2	1	1	1					1	2				1	1				1				1												1								2871
AAGAAT/ATTCTT	2																																																																																								2
AAGAGG/CCTCTT	4																																																																																								4
AAGCAC/CTTGTG	1																																																																																								1
AAGCTG/AGCTTC	1																																																																																								1
AAGGAC/CCTTGT	1																																																																																								1
AAGGCC/CCTTGG	1																																																																																								1
AAGGTC/ACCTTG	7																																																																																								7
AATAGT/ACTATT		1																																																																																							1
AATATT/AATATT	1																																																																																								1
AATGAG/ATTCTC	1																																																																																								1
AATGGC/ATTGCC	1																																																																																								1
AATTAG/AATTCT	1																																																																																								1
ACACAG/CTGTGT	1																																																																																								1
ACACAT/ATGTGT	3																																																																																								3
ACACCC/GGGTGT	1																																																																																								1
ACACCG/CGGTGT	1																																																																																								1
ACACGC/CGTGTG	4	1			1																																																																																				6
ACACGT/ACGTGT	1																																																																																								1
ACATAT/ATATGT	10																																																																																								10
ACATCG/ATGTCG	1																																																																																								1
ACCACG/CGTGGT	5																																																																																								5
ACCAGC/CTGGTG	2																																																																																								2
ACCCCC/GGGGGT	2																																																																																								2
ACCCCG/CGGGGT	1																																																																																								1
ACCCTG/AGGGTC	24	11	4	2				1																																																																																	42
ACCGCC/CGGTGG	4																																																																																								4
ACCGCT/AGCGGT	1																																																																																								1
ACCGTC/ACGGTG	1																																																																																								1
ACGACT/AGTCGT	1																																																																																								1
ACGATG/ATCGTC	2																																																																																								2
ACGCAT/ATGCGT	1																																																																																								1
ACTGCC/AGTGGC	4																																																																																								4
ACTGCT/AGCAGT	1																																																																																								1
AGAGGG/CCCTCT	1																																																																																								1
AGATAT/ATATCT				1																																																																																					1
AGCCGC/CGGCTG		1																																																																																							1
AGCCGG/CCGGCT	1																																																																																								1
AGCGGG/CCCGCT	1																																																																																								1
AGGATG/ATCCTC	3																																																																																								3
AGGGCG/CCCTCG	1																																																																																								1
ATATCC/ATATGG	11																																																																																								11
ATCCCG/ATCGGG	1																																																																																								1
CCCCGG/CCGGGG	1																																																																																								1
