Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_003012265.1/fasta/hub_GCA_003012265.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              17604
Total size of examined sequences (bp):           78096315
Total number of identified SSRs:                 28116
Number of SSR containing sequences:              9876
Number of sequences containing more than 1 SSR:  6075
Number of SSRs present in compound formation:    5159


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	12164
2	6199
3	3804
4	2109
5	2700
6	1140

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	701	536	469	432	419	370	311	280	238	231	187	177	154	115	124	112	101	113	83	70	73	63	57	65	61	39	54	36	34	38	38	25	35	22	22	23	15	22	27	23	16	20	20	11	15	15	5	15	9	12	9	5	8	7	7	5	6	6	4	2	5	5	6	3	5		2		1			1						1				2																									1	6224
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	1	1	1		2	1	2	1	2	1	1		1					1																								1																																																		1															20
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	4	1	3	4				2		2	1					1				1																																																																								1															21
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	673	527	455	441	403	305	272	285	245	213	164	149	162	137	133	115	91	84	80	81	79	47	50	42	41	44	35	34	51	31	30	28	24	32	22	23	23	22	21	14	13	17	8	14	11	7	12	8	13	8	2	6	9	5	5	10	3	6	5	6	2		2	3	4	1		2	3	4		2																																				5899
AC	-	-	-	92	63	64	44	33	16	10	8	5	2	2		2	1		1	1	1	1																																																																																																							346
AG	-	-	-	179	116	126	91	51	30	20	9	5	3	2	1	2			1														1																																																																																												637
AT	-	-	-	542	443	333	202	117	74	28	22	18	15	10	3	7	2	1		2																																																																																																									1819
CA	-	-	-	30	20	24	15	8	7	6	4	2	3	1		1	2						1																																						1																																																																125
CT	-	-	-	112	81	76	56	45	27	21	9	9	3	1																																																																																																															440
GA	-	-	-	94	90	69	63	31	13	20	6	8	1	4		1		1				1																																																																																																							402
GC	-	-	-	1		1																																																																																																																							2
GT	-	-	-	35	35	23	13	10	5	2	3	1	1	1	2											1			1					2																																																																																											135
TA	-	-	-	445	318	242	154	89	55	34	13	13	8	12	3	2	2	4	1			1			1																																																																																																				1397
TC	-	-	-	147	118	100	62	43	19	14	7	4	2	4	2																																																																																																														522
TG	-	-	-	106	91	49	44	24	14	11	9	7	3	2	1	3	1	2	2					1	1			1			1								1																																																																																						374
AAC	-	-	37	17	7	5	2			1																																																																																																																			69
AAG	-	-	18	10		4	1																																																																																																																						33
AAT	-	-	267	109	42	17	8	9	3	3			3	1		1	2		1														1																																																																																												467
ACA	-	-	23	7	6	3	1		1	1			1																																																																																																																43
ACC	-	-	10	2	3	3																																																																																																																							18
ACG	-	-	1																																																																																																																										1
ACT	-	-	8	9	1	4	2	2			1											1																																																																																																							28
AGA	-	-	12	3	2	1																																																																																																																							18
AGC	-	-	10	9	2	3	1													1																																																																																																									26
AGG	-	-	4		2																																																																																																																								6
AGT	-	-	22	9	3	4	1		1						1						1							1																																																																																																	43
ATA	-	-	132	48	22	7	8	1	1	1		1		1	1					1									1																																																																																																225
ATC	-	-	52	38	16	8	3	3	1																																																																																																																				121
ATG	-	-	38	23	8	4	5	1	1																																																																																																																				80
ATT	-	-	277	107	38	16	8	1	3			1	1	1	2		1								1				1																																																																																																458
CAA	-	-	34	32	10	8	9	1	1	1					1		1																																																																																																												98
CAC	-	-	4	9	2																																																																																																																								15
CAG	-	-	18	9	5	1			1																																																																																																																				34
CAT	-	-	31	19	8	2	2	1	1	1																																																																																																																			65
CCA	-	-	13	5	3					1																																																																																																																			22
CCT	-	-	6	1	1	3																																																																																																																							11
CGT	-	-		1																																																																																																																									1
CTA	-	-	12	2	6	2	1	1			1							1																																																																																																											26
CTC	-	-	4	2		1	1																																																																																																																						8
CTG	-	-	8	5	1																																																																																																																								14
CTT	-	-	12	10	7	1	1																																																																																																																						31
GAA	-	-	19	9	4	1																																																																																																																							33
GAG	-	-	7	5	1																																																																																																																								13
GAT	-	-	50	21	12	7	1	1												1																																																																																																									93
GCA	-	-	10	5	6	1																																																																																																																							22
GCC	-	-	1																																																																																																																										1
GCT	-	-	6	4	2																																																																																																																								12
GGA	-	-	6	2	1																																																																																																																								9
GGT	-	-	13	3	4			1																																																																																																																					21
GTA	-	-	17	9	1	5	3	2					1																																																																																																																38
GTG	-	-	4	5																																																																																																																									9
GTT	-	-	15	5	4	2																																																																																																																							26
TAA	-	-	213	83	43	17	2	4	4	2	2	1		3	3			1	1								2																																																																																																		381
TAC	-	-	22	16	9	3	2														1																																																																																																								53
TAG	-	-	14	11	4	2	2	1					1		1																	1																																																																																													37
TAT	-	-	147	64	31	14	7	2		1		1		2	1								1	1														1																																																																																							273
TCA	-	-	32	14	8	5	3	1			1																																																																																																																		64
TCC	-	-	4	3	2																																																																																																																								9
TCG	-	-	1	1																																																																																																																									2
TCT	-	-	11	7	2	1																																																																																																																							21
TGA	-	-	42	16	6	2	3	3		1																					1																																																																																														74
TGC	-	-	12	19	8	1	1																																																																																																																						41
TGG	-	-	6	4	2	1																																																																																																																							13
TGT	-	-	34	25	4	5	6	3						1																																																																																																															78
TTA	-	-	210	102	42	10	8	6	1	3	1	4	2		1		1	2	2	2	1	1	2		1								1		1																																																																																										404
TTC	-	-	19	10	2	2		1	1																																																																																																																				35
TTG	-	-	44	15	15	3	1	1	1		1																																																																																																																		81
AAAC	-	26	10	2																																																																																																																									38
AAAG	-	28	7	5																																																																																																																									40
AAAT	-	174	50	9	1						1	1				1																																																																																																													237
AACA	-	5	1	1																																																																																																																									7
AACC	-	1																																																																																																																											1
AACT	-		1			1																																																																																																																							2
AAGA	-	15																																																																																																																											15
AAGC	-	2																																																																																																																											2
AAGG	-	3																																																																																																																											3
AAGT	-	1																																																																																																																											1
AATA	-	51	14	3			1																																																																																																																						69
AATC	-	8	2																																																																																																																										10
AATG	-	23	2	1																																																																																																																									26
AATT	-	98	18	1																																																																																																																									117
ACAA	-	3																																																																																																																											3
ACAG	-	14	3	1																																																																																																																									18
ACAT	-	7	4																																																																																																																										11
ACCA	-			1																																																																																																																									1
ACCT	-	3		1																																																																																																																									4
ACGC	-	1	1																																																																																																																										2
ACTC	-	1																																																																																																																											1
ACTG	-	1																																																																																																																											1
AGAA	-	8	4																																																																																																																										12
AGAC	-	5	3																																																																																																																										8
AGAT	-	4																																																																																																																											4
AGCA	-	2																																																																																																																											2
AGGT	-	1																																																																																																																											1
AGTA	-	5																																																																																																																											5
AGTC	-		1																																																																																																																										1
AGTG	-	2																																																																																																																											2
AGTT	-		1		1																																																																																																																								2
ATAA	-	20	7	4	2					1					1																																																																																																														35
ATAC	-	10	2			1																																																																																																																							13
ATAG	-	4	3																																																																																																																										7
ATCA	-	9	1		1																																																																																																																								11
ATCC	-	2		2			1																																																																																																																						5
ATCT	-	3			1																																																																																																																								4
ATGA	-	11	2	1																																																																																																																									14
ATGC	-	5																																																																																																																											5
ATGG	-	3																																																																																																																											3
ATGT	-	4	1																																																																																																																										5
ATTA	-	67	25	2	1			1																																																																																																																					96
ATTC	-	14	5																																																																																																																										19
ATTG	-	14	2	2	1																																																																																																																								19
ATTT	-	96	15	6	1																																																																																																																								118
CAAA	-	4	2	3																																																																																																																									9
CAAC	-	3		1																																																																																																																									4
CAAT	-	6	2	1																																																																																																																									9
CACG	-	1																																																																																																																											1
CACT	-	2																																																																																																																											2
CAGA	-	6																																																																																																																											6
CAGG	-	1																																																																																																																											1
CAGT	-	1	1																																																																																																																										2
CATA	-	4																																																																																																																											4
CATC	-	4			2																																																																																																																								6
CATG	-	5																																																																																																																											5
CATT	-	8	4	2	1			1																																																																																																																					16
CCAT	-	5			1										1																																																																																																														7
CCGA	-	1																																																																																																																											1
CCTA	-		1																																																																																																																										1
CGAA	-	1	1																																																																																																																										2
CGCA	-	1																																																																																																																											1
CGGT	-		1																																																																																																																										1
CGTC	-		1																																																																																																																										1
CTAG	-	1																																																																																																																											1
CTGA	-	1																																																																																																																											1
CTGT	-	1																																																																																																																											1
CTTC	-	2	1																																																																																																																										3
CTTG	-	1																																																																																																																											1
CTTT	-	10	1																																																																																																																										11
GAAA	-	13	1	1																																																																																																																									15
GAAC	-	2																																																																																																																											2
GAAG	-	2																																																																																																																											2
GAAT	-	8	1																																																																																																																										9
GACA	-	9	4																																																																																																																										13
GATA	-	1																																																																																																																											1
GATC	-	2																																																																																																																											2
GATG	-	6																																																																																																																											6
GATT	-	2																																																																																																																											2
GCAT	-	4		2																																																																																																																									6
GCCC	-	1																																																																																																																											1
GCTA	-	1																																																																																																																											1
GGAA	-	6	1																																																																																																																										7
GGAC	-	1																																																																																																																											1
GGAG	-	2																																																																																																																											2
GGAT	-	2		1																																																																																																																									3
GGGA	-		1																																																																																																																										1
GGTC	-	2																																																																																																																											2
GTAA	-	1																																																																																																																											1
GTAT	-	7																																																																																																																											7
GTCA	-	2																																																																																																																											2
GTCT	-	7	2	1																																																																																																																									10
GTGC	-	2	4																																																																																																																										6
GTGG	-	2																																																																																																																											2
GTTA	-	2																																																																																																																											2
GTTG	-	2																																																																																																																											2
GTTT	-	6	4	1																																																																																																																									11
TAAA	-	43	12	3					1																																																																																																																				59
TAAC	-	3																																																																																																																											3
TAAG	-	2																																																																																																																											2
TAAT	-	78	12	3																																																																																																																									93
TACA	-	3	1	1																																																																																																																									5
TACG	-	1																																																																																																																											1
TACT	-	1																																																																																																																											1
TAGA	-				1																																																																																																																								1
TAGC	-	2	1																																																																																																																										3
TAGT	-	2																																																																																																																											2
TATC	-	2																																																																																																																											2
TATG	-	8	2																																																																																																																										10
TATT	-	60	13	4	1					1																																																																																																																			79
TCAA	-	2	1	1																																																																																																																									4
TCAC	-	1																																																																																																																											1
TCAT	-	13	4		1																																																																																																																								18
TCCA	-	2	1			1																																																																																																																							4
TCCC	-	1																																																																																																																											1
TCCG	-	2																																																																																																																											2
TCCT	-			1																																																																																																																									1
TCGA	-	1																																																																																																																											1
TCTA	-	2																																																																																																																											2
TCTG	-	8	3																																																																																																																										11
TCTT	-	6	3																																																																																																																										9
TGAA	-	7	1	1																																																																																																																									9
TGAC	-		1							1																																																																																																																			2
TGAT	-	9	2	3																																																																																																																									14
TGCA	-	3		1																																																																																																																									4
TGCT	-	1	1																																																																																																																										2
TGGA	-	2	2																																																																																																																										4
TGGT	-		1	1																																																																																																																									2
TGTA	-	6	4																																																																																																																										10
TGTC	-	11	9		1																																																																																																																								21
TGTT	-	6	1	1																																																																																																																									8
TTAA	-	73	7		1																																																																																																																								81
TTAC	-	4																																																																																																																											4
TTAT	-	69	13	3	1	1	2	1										1																																																																																																											91
TTCA	-	14	1		1																																																																																																																								16
TTCC	-	4	1	1																																																																																																																									6
TTCG	-	2																																																																																																																											2
TTCT	-	16	3																																																																																																																										19
TTGA	-	3																																																																																																																											3
TTGG	-	1		1																																																																																																																									2
TTGT	-	5	5	1	1																																																																																																																								12
TTTA	-	132	32	7	3	1	2	1																	1																																																																																																				179
TTTC	-	45	8	1	1																																																																																																																								55
TTTG	-	26	5	1																																																																																																																									32
AAAAC	37	3	1																																																																																																																										41
AAAAG	104	7	1	1																																																																																																																									113
AAAAT	117	23																																																																																																																											140
AAACA	14	2																																																																																																																											16
AAACC	1																																																																																																																												1
AAACG	1																																																																																																																												1
AAACT	4	1																																																																																																																											5
AAAGA	23	2																																																																																																																											25
AAAGG	14																																																																																																																												14
AAAGT	2																																																																																																																												2
AAATA	45	5																																																																																																																											50
AAATC	2																																																																																																																												2
AAATG	32																																																																																																																												32
AAATT	61	10																																																																																																																											71
AACAA	11	1																																																																																																																											12
AACAC	1																																																																																																																												1
AACAG	1																																																																																																																												1
AACCG		1																																																																																																																											1
AACGA	1																																																																																																																												1
AACGG	1																																																																																																																												1
AACGT	1																																																																																																																												1
AACTA	4																																																																																																																												4
AACTC	1																																																																																																																												1
AACTG	1																																																																																																																												1
AAGAA	22	4	1																																																																																																																										27
AAGAC	1																																																																																																																												1
AAGAG	4																																																																																																																												4
AAGCA	2																																																																																																																												2
AAGTA	1																																																																																																																												1
AAGTG	1																																																																																																																												1
AATAA	20	4	1																																																																																																																										25
AATAT	5	1					1																																																																																																																						7
AATCA	2																																																																																																																												2
AATCC	1																																																																																																																												1
AATCG	1	1																																																																																																																											2
AATCT	1																																																																																																																												1
AATGA	26																																																																																																																												26
AATGC	2																																																																																																																												2
AATGG	2	1	1																																																																																																																										4
AATGT	1																																																																																																																												1
AATTA	29	2	1																																																																																																																										32
AATTC	7																																																																																																																												7
AATTG	13																																																																																																																												13
AATTT	53	2																																																																																																																											55
ACAAA	10																																																																																																																												10
ACAAG	2																																																																																																																												2
ACAAT	1																																																																																																																												1
ACACT	1																																																																																																																												1
ACAGA	1																																																																																																																												1
ACATA	3																																																																																																																												3
ACATC		2																																																																																																																											2
ACCAG	1																																																																																																																												1
ACCCT	1																																																																																																																												1
ACCTG	1																																																																																																																												1
ACGAA		1																																																																																																																											1
ACGAT	2																																																																																																																												2
ACGCT	1																																																																																																																												1
ACGGA	2																																																																																																																												2
ACGTA	1																																																																																																																												1
ACGTG	1																																																																																																																												1
ACGTT	1																																																																																																																												1
ACTAG	1																																																																																																																												1
ACTGA	1																																																																																																																												1
ACTTC	1																																																																																																																												1
AGAAA	18	2																																																																																																																											20
AGAAC	1																																																																																																																												1
AGAAG	2																																																																																																																												2
AGACA	1																																																																																																																												1
AGACT	1																																																																																																																												1
AGAGA	2																																																																																																																												2
AGAGG	3																																																																																																																												3
AGATA	2																																																																																																																												2
AGATC	1	1																																																																																																																											2
AGATT		1																																																																																																																											1
AGCAA	1																																																																																																																												1
AGCTT	1																																																																																																																												1
AGGAA	4							1																																																																																																																					5
AGGAG		1																																																																																																																											1
AGGCA	1																																																																																																																												1
AGGGA	1																																																																																																																												1
AGGGG	1																																																																																																																												1
AGGTC	1																																																																																																																												1
AGTAA	2																																																																																																																												2
AGTCT	1																																																																																																																												1
AGTGA	2																																																																																																																												2
AGTTC	1																																																																																																																												1
AGTTG	4																																																																																																																												4
AGTTT	1																																																																																																																												1
ATAAA	29	1	1																																																																																																																										31
ATAAG	1																																																																																																																												1
ATAAT	18	1																																																																																																																											19
ATAGA	1																																																																																																																												1
ATAGC	1																																																																																																																												1
ATATA	17	2																																																																																																																											19
ATATC	7																																																																																																																												7
ATATG	10	3	2																																																																																																																										15
ATATT	6		2																																																																																																																										8
ATCAA	3																																																																																																																												3
ATCAC	1																																																																																																																												1
ATCAG	1																																																																																																																												1
ATCAT	15	4	1																																																																																																																										20
ATCCA	1																																																																																																																												1
ATCCG	1																																																																																																																												1
ATCCT	1																																																																																																																												1
ATCGA	1																																																																																																																												1
ATCTA	2																																																																																																																												2
ATCTC	1																																																																																																																												1
ATGAA	15	2																																																																																																																											17
ATGAC	1																																																																																																																												1
ATGAG	1																																																																																																																												1
ATGAT	14	2																																																																																																																											16
ATGGG	1																																																																																																																												1
ATGTC	1	1																																																																																																																											2
ATGTG	1																																																																																																																												1
ATGTT		1																																																																																																																											1
ATTAA	29	1																																																																																																																											30
ATTAC	2																																																																																																																												2
ATTAT	5	2				1																																																																																																																							8
ATTCA	8	2																																																																																																																											10
ATTCC	2																																																																																																																												2
ATTCG	1																																																																																																																												1
ATTGA	4	1																																																																																																																											5
ATTGC	2																																																																																																																												2
ATTGG	2																																																																																																																												2
ATTGT	1																																																																																																																												1
ATTTA	14	2	1	1	1																																																																																																																								19
ATTTC	22	2																																																																																																																											24
ATTTG	6																																																																																																																												6
ATTTT	67	8	2																																																																																																																										77
CAAAA	18	2																																																																																																																											20
CAAAC	1																																																																																																																												1
CAAAG	2																																																																																																																												2
CAAAT	2																																																																																																																												2
CAACC	1																																																																																																																												1
CAAGT	1																																																																																																																												1
CACAT	2																																																																																																																												2
CACCA		1																																																																																																																											1
CACTA	1																																																																																																																												1
CACTT			1																																																																																																																										1
CAGAA	1																																																																																																																												1
CAGAT	2																																																																																																																												2
CAGTA	1																																																																																																																												1
CATAA	2																																																																																																																												2
CATAT	8	4		1																																																																																																																									13
CATCT	2		1																																																																																																																										3
CATGT	1																																																																																																																												1
CATTA	1																																																																																																																												1
CATTC	6	1																																																																																																																											7
CATTT	15	1		1																																																																																																																									17
CCATT	2																																																																																																																												2
CCCCT	3																																																																																																																												3
CCGAG	1																																																																																																																												1
CCGTC	1																																																																																																																												1
CCGTT	1																																																																																																																												1
CCTCA	1																																																																																																																												1
CCTCG	1																																																																																																																												1
CCTGT	1																																																																																																																												1
CCTTA	1																																																																																																																												1
CCTTT	1																																																																																																																												1
CGAAA	1																																																																																																																												1
CGAGG	1																																																																																																																												1
CGAGT	1																																																																																																																												1
CGCAA	1																																																																																																																												1
CGCAC	1																																																																																																																												1
CGTGA	1																																																																																																																												1
CGTTG	1																																																																																																																												1
CTACA	1																																																																																																																												1
CTAGA	2																																																																																																																												2
CTAGG	1																																																																																																																												1
CTATA	1																																																																																																																												1
CTATG	2																																																																																																																												2
CTATT	1																																																																																																																												1
CTCCA	1																																																																																																																												1
CTCCC	1																																																																																																																												1
CTCTC	1																																																																																																																												1
CTCTT	1																																																																																																																												1
CTGAT	1																																																																																																																												1
CTGTG	1																																																																																																																												1
CTTAC	1																																																																																																																												1
CTTAG	1																																																																																																																												1
CTTAT	1																																																																																																																												1
CTTCA		1																																																																																																																											1
CTTCT	2																																																																																																																												2
CTTGT	1																																																																																																																												1
CTTTC	6																																																																																																																												6
CTTTT	45	8																																																																																																																											53
GAAAA	46	1	2																																																																																																																										49
GAAAC	3																																																																																																																												3
GAAAG	2																																																																																																																												2
GAAAT	25	1																																																																																																																											26
GAACA	2																																																																																																																												2
GAACG	1																																																																																																																												1
GAAGA	1																																																																																																																												1
GAAGG		1																																																																																																																											1
GAAGT	2																																																																																																																												2
GAATA	1																																																																																																																												1
GAATC	1																																																																																																																												1
GAATG	5																																																																																																																												5
GAATT	6	1																																																																																																																											7
GAGAA	2																																																																																																																												2
GAGAT	1																																																																																																																												1
GAGGA	1																																																																																																																												1
GATAA	7	1																																																																																																																											8
GATAT	4		1																																																																																																																										5
GATGA	4																																																																																																																												4
GATGT	3																																																																																																																												3
GATTA	1																																																																																																																												1
GATTC	1																																																																																																																												1
GATTG	2																																																																																																																												2
GATTT	1																																																																																																																												1
GCAAA	2																																																																																																																												2
GCAAC		1																																																																																																																											1
GCTTA	1																																																																																																																												1
GCTTT	1																																																																																																																												1
GGAAA	2	1																																																																																																																											3
GGAAG	1	1																																																																																																																											2
GGAAT	2	1																																																																																																																											3
GGACT	1																																																																																																																												1
GGATA	1																																																																																																																												1
GGATC	1																																																																																																																												1
GGCTC	1																																																																																																																												1
GGGAA	1																																																																																																																												1
GGGGA	1																																																																																																																												1
GGGTA		1																																																																																																																											1
GGGTG	1																																																																																																																												1
GGTAA	1																																																																																																																												1
GGTAC	1																																																																																																																												1
GGTAG		1																																																																																																																											1
GGTCA	1																																																																																																																												1
GGTTT	1																																																																																																																												1
GTAAA	1																																																																																																																												1
GTAAC	1																																																																																																																												1
GTACT	1																																																																																																																												1
GTCGC	1																																																																																																																												1
GTCTA	1																																																																																																																												1
GTGAA	1	1																																																																																																																											2
GTGAG	1																																																																																																																												1
GTGCT	2																																																																																																																												2
GTGTA		1																																																																																																																											1
GTGTG	1		1																																																																																																																										2
GTTAA	1																																																																																																																												1
GTTAG	1																																																																																																																												1
GTTAT	1																																																																																																																												1
GTTGC	1																																																																																																																												1
GTTTA	1																																																																																																																												1
GTTTT	20	3																																																																																																																											23
TAAAA	45	4																																																																																																																											49
TAAAC	2																																																																																																																												2
TAAAT	22	4																																																																																																																											26
TAACA	1																																																																																																																												1
TAAGC		1																																																																																																																											1
TAAGT	1																																																																																																																												1
TAATA	10	1			1																																																																																																																								12
TAATC	2	1																																																																																																																											3
TAATG	1																																																																																																																												1
TAATT	23	2																																																																																																																											25
TACCT	1																																																																																																																												1
TACGT	1																																																																																																																												1
TAGAA	1																																																																																																																												1
TAGAT	1																																																																																																																												1
TAGCG	1																																																																																																																												1
TAGGA	1																																																																																																																												1
TAGTC	2																																																																																																																												2
TATAA	9	1																																																																																																																											10
TATAG	1																																																																																																																												1
TATAT	7	3						1				1																																																																																																																	12
TATCA	20	6																																																																																																																											26
TATCT	2	1																																																																																																																											3
TATGA	7	4	2																																																																																																																										13
TATGG	1																																																																																																																												1
TATGT	1																																																																																																																												1
TATTA	14	1	1	1					1																																																																																																																				18
TATTC	4																																																																																																																												4
TATTT	37	1																																																																																																																											38
TCAAA	4																																																																																																																												4
TCAAT	3																																																																																																																												3
TCACC	1																																																																																																																												1
TCACG	1																																																																																																																												1
TCAGA	1																																																																																																																												1
TCAGT	2	1																																																																																																																											3
TCATA	2	1																																																																																																																											3
TCATC	3																																																																																																																												3
TCATT	10	2	1																																																																																																																										13
TCCCC	2		1																																																																																																																										3
TCCGT	1																																																																																																																												1
TCCTT	2																																																																																																																												2
TCGAT	1		1																																																																																																																										2
TCTAG	2																																																																																																																												2
TCTAT		1																																																																																																																											1
TCTCA	1																																																																																																																												1
TCTCC	1																																																																																																																												1
TCTCG	1																																																																																																																												1
TCTCT	3																																																																																																																												3
TCTGA	1																																																																																																																												1
TCTTA	2																																																																																																																												2
TCTTC	2																																																																																																																												2
TCTTT	21	4																																																																																																																											25
TGAAA	29	4	1				1																																																																																																																						35
TGAAC	1		1																																																																																																																										2
TGAAT	4																																																																																																																												4
TGACA	1																																																																																																																												1
TGACC		1																																																																																																																											1
TGACG	1																																																																																																																												1
TGACT	2																																																																																																																												2
TGAGA	2																																																																																																																												2
TGAGG	1																																																																																																																												1
TGAGT	1																																																																																																																												1
TGATA	25	9	2	1																																																																																																																									37
TGATC	1																																																																																																																												1
TGATT	1	1																																																																																																																											2
TGCAA	3	1																																																																																																																											4
TGCAG	1																																																																																																																												1
TGCAT	2																																																																																																																												2
TGGGA	1																																																																																																																												1
TGGTC	1																																																																																																																												1
TGTAA		1																																																																																																																											1
TGTAT	1																																																																																																																												1
TGTCC	1																																																																																																																												1
TGTCT	1																																																																																																																												1
TGTGA	1																																																																																																																												1
TGTTC	1																																																																																																																												1
TGTTT	12	2	1																																																																																																																										15
TTAAA	44	1	1																																																																																																																										46
TTAAC	2																																																																																																																												2
TTAAT	25	1	2																																																																																																																										28
TTACC	1	1																																																																																																																											2
TTACT	1																																																																																																																												1
TTAGA	1																																																																																																																												1
TTAGC	2																																																																																																																												2
TTAGT	1																																																																																																																												1
TTATA	5																																																																																																																												5
TTATC	2	1																																																																																																																											3
TTATG	2																																																																																																																												2
TTATT	36	1	1																																																																																																																										38
TTCAA	7																																																																																																																												7
TTCAC		1																																																																																																																											1
TTCAG	8																																																																																																																												8
TTCAT	20	1	1																																																																																																																										22
TTCCA	1																																																																																																																												1
TTCCG	1																																																																																																																												1
TTCCT	4																																																																																																																												4
TTCGC	1																																																																																																																												1
TTCTT	19	2	1																																																																																																																										22
TTGAA	7	1																																																																																																																											8
TTGAT	3																																																																																																																												3
TTGCT	1																																																																																																																												1
TTGGT	1																																																																																																																												1
TTGTA	1																																																																																																																												1
TTGTT	6	1																																																																																																																											7
TTTAA	48	6																																																																																																																											54
TTTAC	3																																																																																																																												3
TTTAT	45	3	1																																																																																																																										49
TTTCA	25	4	1																																																																																																																										30
TTTCC	9																																																																																																																												9
TTTCG	2																																																																																																																												2
TTTCT	36	4																																																																																																																											40
TTTGA	7																																																																																																																												7
TTTGC	2																																																																																																																												2
TTTGG	1																																																																																																																												1
TTTGT	10	2	1																																																																																																																										13
TTTTA	72	5					1																																																																																																																						78
TTTTC	92	8	1	1																																																																																																																									102
TTTTG	49	3																																																																																																																											52
AAAAAC	20	4	1																																																																																																																										25
AAAAAG	34	1																																																																																																																											35
AAAAAT	32	2																																																																																																																											34
AAAACA	3																																																																																																																												3
AAAAGA	8																																																																																																																												8
AAAAGC	1																																																																																																																												1
AAAAGG	2																																																																																																																												2
AAAAGT	1																																																																																																																												1
AAAATA	4																																																																																																																												4
AAAATG	2																																																																																																																												2
AAAATT	11																																																																																																																												11
AAACAA	6																																																																																																																												6
AAAGAA	5																																																																																																																												5
AAAGAG	4																																																																																																																												4
AAAGGA	1																																																																																																																												1
AAATAA	5																																																																																																																												5
AAATAC	1																																																																																																																												1
AAATAG	1																																																																																																																												1
AAATAT	1																																																																																																																												1
AAATGA		1																																																																																																																											1
AAATGC	1																																																																																																																												1
AAATGG	1																																																																																																																												1
AAATTA	4	1																																																																																																																											5
AAATTT	15	1																																																																																																																											16
AACAAA	5	1																																																																																																																											6
AACAAT	3																																																																																																																												3
AACATC	1																																																																																																																												1
AACGAT	1																																																																																																																												1
AACGGC	1																																																																																																																												1
AACTAA	2																																																																																																																												2
AACTAT	1																																																																																																																												1
AAGAAA	8																																																																																																																												8
AAGAAT	2																																																																																																																												2
AAGAGA	3																																																																																																																												3
AAGCAA	1																																																																																																																												1
AAGCCT	1																																																																																																																												1
AAGGAA	2																																																																																																																												2
AAGGAG	1																																																																																																																												1
AAGTTA	1																																																																																																																												1
AATAAA	9																																																																																																																												9
AATACT	1																																																																																																																												1
AATAGT	1																																																																																																																												1
AATATA	2	1																																																																																																																											3
AATATT	1																																																																																																																												1
AATGAA	2																																																																																																																												2
AATGAC	1																																																																																																																												1
AATGAT	10	3																																																																																																																											13
AATTAA	2	1																																																																																																																											3
AATTAT	2	1																																																																																																																											3
AATTCA	1																																																																																																																												1
AATTGA	1																																																																																																																												1
AATTTA	5																																																																																																																												5
AATTTC	2																																																																																																																												2
AATTTT	12																																																																																																																												12
ACAAAA	3																																																																																																																												3
ACAAAT	1																																																																																																																												1
ACAACT	1																																																																																																																												1
ACAATA	1																																																																																																																												1
ACACAT	8																																																																																																																												8
ACACGC	2	1																																																																																																																											3
ACACGT	1																																																																																																																												1
ACAGAC	1																																																																																																																												1
ACAGCA		1																																																																																																																											1
ACATAC	7	1																																																																																																																											8
ACATAT	1																																																																																																																												1
ACGAAA	1																																																																																																																												1
ACGACA	1																																																																																																																												1
ACGATA	1																																																																																																																												1
ACGATG	1																																																																																																																												1
ACGCAC	1	1																																																																																																																											2
ACGTAT	1																																																																																																																												1
ACTACC	2																																																																																																																												2
ACTATT	1																																																																																																																												1
ACTGCA	1																																																																																																																												1
ACTGCT	1																																																																																																																												1
ACTGTT	1																																																																																																																												1
ACTTTC	1																																																																																																																												1
AGAAAA	6																																																																																																																												6
AGAAAG	3																																																																																																																												3
AGACAC	1																																																																																																																												1
AGAGAA	7	1																																																																																																																											8
AGAGGG	1	1																																																																																																																											2
AGCAAA		2																																																																																																																											2
AGCAAC			1																																																																																																																										1
AGCAGT			1																																																																																																																										1
AGCTAA	1																																																																																																																												1
AGCTCC	1																																																																																																																												1
AGCTGC	1																																																																																																																												1
AGCTGG	1																																																																																																																												1
AGCTTG	1																																																																																																																												1
AGGAAG	1																																																																																																																												1
AGGAGA	1																																																																																																																												1
AGGGAG	1																																																																																																																												1
AGGTGG		1																																																																																																																											1
AGTAAC	1																																																																																																																												1
AGTAAT	1																																																																																																																												1
AGTAGC	2																																																																																																																												2
AGTTCA	1																																																																																																																												1
AGTTCG	1																																																																																																																												1
ATAAAA	8																																																																																																																												8
ATAAAT	1																																																																																																																												1
ATAACA	2																																																																																																																												2
ATAATC		1																																																																																																																											1
ATAATG	14	2																																																																																																																											16
ATAATT	3																																																																																																																												3
ATACAC	1																																																																																																																												1
ATACAT	3																																																																																																																												3
ATAGAT	1																																																																																																																												1
ATAGTC	1																																																																																																																												1
ATATAA	4																																																																																																																												4
ATATAC	2							1																																																																																																																					3
ATATAG		1																																																																																																																											1
ATATGG	1																																																																																																																												1
ATATTA	1																																																																																																																												1
ATATTT	2																																																																																																																												2
ATCACC	1																																																																																																																												1
ATCACT	2																																																																																																																												2
ATCATG	1																																																																																																																												1
ATCATT	13																																																																																																																												13
ATCCTC	1																																																																																																																												1
ATCGTC	1																																																																																																																												1
ATCTAT	1																																																																																																																												1
ATGACA	1																																																																																																																												1
ATGATA	11	3																																																																																																																											14
ATGATT	1																																																																																																																												1
ATGCGT	1																																																																																																																												1
ATGGTG	1																																																																																																																												1
ATGTAT	2																																																																																																																												2
ATGTCA	1																																																																																																																												1
ATTAAA	3																																																																																																																												3
ATTAAC	1																																																																																																																												1
ATTACT	1							1																																																																																																																					2
ATTATA	1																																																																																																																												1
ATTATC	10	2																																																																																																																											12
ATTCAC	1																																																																																																																												1
ATTCAT	1																																																																																																																												1
ATTCTG	1																																																																																																																												1
ATTGTC	2																																																																																																																												2
ATTGTT	3																																																																																																																												3
ATTTAA	2																																																																																																																												2
ATTTAT	1																																																																																																																												1
ATTTGA	2																																																																																																																												2
ATTTGT	1																																																																																																																												1
ATTTTA	1																																																																																																																												1
ATTTTC	3																																																																																																																												3
ATTTTT	22	1																																																																																																																											23
CAAAAA	4	1																																																																																																																											5
CAAATC	1																																																																																																																												1
CAAATT	1																																																																																																																												1
CAACAG	4	2																																																																																																																											6
CAACGA	1																																																																																																																												1
CAATAA	3																																																																																																																												3
CAATCC	1																																																																																																																												1
CAATTT	1																																																																																																																												1
CACACG	1																																																																																																																												1
CACCAT	1																																																																																																																												1
CACCTG	2																																																																																																																												2
CACGCA	1																																																																																																																												1
CAGACA	2																																																																																																																												2
CAGCAA	4	2																																																																																																																											6
CAGCTG	1																																																																																																																												1
CAGTAT		1																																																																																																																											1
CATAAA	1																																																																																																																												1
CATACA	1																																																																																																																												1
CATACG	1																																																																																																																												1
CATCAA	1																																																																																																																												1
CATCAC	2																																																																																																																												2
CATGCA	1																																																																																																																												1
CATTAT	4	1	1																																																																																																																										6
CATTTT	1																																																																																																																												1
CCACCG	1																																																																																																																												1
CCATTA	1																																																																																																																												1
CCCCTT		1																																																																																																																											1
CCGCTT	1																																																																																																																												1
CCTCCA	3																																																																																																																												3
CCTCTC	1																																																																																																																												1
CGATAA		1																																																																																																																											1
CGATGG	1																																																																																																																												1
CGCACA	1																																																																																																																												1
CGCATA	1																																																																																																																												1
CGGTGG	1																																																																																																																												1
CGTCGC	1																																																																																																																												1
CGTTAT	2																																																																																																																												2
CGTTCA	1																																																																																																																												1
CTACAG	1																																																																																																																												1
CTACGG	1																																																																																																																												1
CTACTG	2																																																																																																																												2
CTAGTC	1																																																																																																																												1
CTATTG	1																																																																																																																												1
CTCATT	2																																																																																																																												2
CTCCCT	1	1																																																																																																																											2
CTCCTT		1																																																																																																																											1
CTCGAC	1																																																																																																																												1
CTCTTT	1																																																																																																																												1
CTGCAG	1																																																																																																																												1
CTGCTA	5	2																																																																																																																											7
CTGTTA	1																																																																																																																												1
CTGTTG	1																																																																																																																												1
CTTACC	1																																																																																																																												1
CTTAGG	1																																																																																																																												1
CTTCAT	1																																																																																																																												1
CTTTCT	2																																																																																																																												2
CTTTTA	1																																																																																																																												1
CTTTTC	2																																																																																																																												2
CTTTTT	11																																																																																																																												11
GAAAAA	12																																																																																																																												12
GAAAAC	1																																																																																																																												1
GAAAAT	1																																																																																																																												1
GAAAGA	1																																																																																																																												1
GAAATT	1																																																																																																																												1
GAAGAG	1																																																																																																																												1
GAAGGA	1																																																																																																																												1
GAAGTG	1																																																																																																																												1
GAATGT	1																																																																																																																												1
GACAAT	1																																																																																																																												1
GACACA	2																																																																																																																												2
GACGGG	1																																																																																																																												1
GAGAAA	1	1																																																																																																																											2
GAGAGG	1																																																																																																																												1
GAGCAG	1																																																																																																																												1
GAGGAA	1																																																																																																																												1
GAGGGG	1																																																																																																																												1
GATAAC	3																																																																																																																												3
GATAAT	1																																																																																																																												1
GATAGT	1																																																																																																																												1
GATATT	1																																																																																																																												1
GATCAT	1																																																																																																																												1
GATGAA	1																																																																																																																												1
GATGAC	1																																																																																																																												1
GATGCG		1																																																																																																																											1
GATTAT	1																																																																																																																												1
GATTCA	1																																																																																																																												1
GATTCC	1																																																																																																																												1
GATTTG	1																																																																																																																												1
GCAACA	1	1																																																																																																																											2
GCACAC	2																																																																																																																												2
GCACCA		1																																																																																																																											1
GCAGCG	1																																																																																																																												1
GCAGCT	2																																																																																																																												2
GCTACA	1																																																																																																																												1
GCTACT	1																																																																																																																												1
GCTATT		1																																																																																																																											1
GCTGCC	1																																																																																																																												1
GGAAAT	1																																																																																																																												1
GGAGAG	1																																																																																																																												1
GGCACG	1																																																																																																																												1
GGGAGT	1																																																																																																																												1
GGGGTT	1																																																																																																																												1
GGGTAT	1																																																																																																																												1
GGGTTA			1																																																																																																																										1
GGTGCG	1																																																																																																																												1
GTAATA	1																																																																																																																												1
GTAATT	2																																																																																																																												2
GTACAG	1																																																																																																																												1
GTACTA	1																																																																																																																												1
GTATAT	1																																																																																																																												1
GTCAAC	1																																																																																																																												1
GTCATC	1																																																																																																																												1
GTCGTT	1																																																																																																																												1
GTGATA	3																																																																																																																												3
GTGCAT	1																																																																																																																												1
GTGCGT		1																																																																																																																											1
GTGGAG		1																																																																																																																											1
GTGGCC		1																																																																																																																											1
GTGTAT	1																																																																																																																												1
GTGTGC			1																																																																																																																										1
GTGTGG	1																																																																																																																												1
GTTCCG	1																																																																																																																												1
GTTGTC	1																																																																																																																												1
GTTGTG	1																																																																																																																												1
GTTTCT	1																																																																																																																												1
GTTTTT	5	1																																																																																																																											6
TAAAAA	12	2																																																																																																																											14
TAAAAG	1																																																																																																																												1
TAAAAT	2																																																																																																																												2
TAAATA	3																																																																																																																												3
TAAATT	7																																																																																																																												7
TAACAA	2																																																																																																																												2
TAACAG	1																																																																																																																												1
TAATAG	1	1																																																																																																																											2
TAATAT	2																																																																																																																												2
TAATCT	1																																																																																																																												1
TAATGA	5	1																																																																																																																											6
TAATGT	1																																																																																																																												1
TAATTA	3	1																																																																																																																											4
TAATTG	1																																																																																																																												1
TAATTT	6																																																																																																																												6
TACAGG	1																																																																																																																												1
TACATA	1																																																																																																																												1
TACCAA	1																																																																																																																												1
TACCCT	1																																																																																																																												1
TACGTA	1																																																																																																																												1
TACTAA	2																																																																																																																												2
TACTAT	2		1																																																																																																																										3
TACTGA	1																																																																																																																												1
TACTGC	1		1																																																																																																																										2
TAGAAT		1																																																																																																																											1
TAGCAG	2		1																																																																																																																										3
TAGTAA	3	1																																																																																																																											4
TAGTAT	1																																																																																																																												1
TATAAA	1																																																																																																																												1
TATAAT	2																																																																																																																												2
TATATG	1																																																																																																																												1
TATATT	2																																																																																																																												2
TATCAT	11																																																																																																																												11
TATGAT	2																																																																																																																												2
TATGTA		1																																																																																																																											1
TATGTG	1																																																																																																																												1
TATTAA	1																																																																																																																												1
TATTAC	3															1																																																																																																													4
TATTAG		1																																																																																																																											1
TATTCA	1																																																																																																																												1
TATTGC	2																																																																																																																												2
TATTGT	3																																																																																																																												3
TATTTA	1									1																																																																																																																			2
TATTTT	4																																																																																																																												4
TCAAAA	1																																																																																																																												1
TCACAT	1																																																																																																																												1
TCACTA	1																																																																																																																												1
TCAGCT	1																																																																																																																												1
TCATAT	1																																																																																																																												1
TCATCT	1																																																																																																																												1
TCATTA	1																																																																																																																												1
TCATTT	1																																																																																																																												1
TCCACC	2																																																																																																																												2
TCCCCC	1																																																																																																																												1
TCCTCG	1																																																																																																																												1
TCCTCT	2																																																																																																																												2
TCCTTT	3																																																																																																																												3
TCGAGA	1																																																																																																																												1
TCGTCT	1																																																																																																																												1
TCTCTG	1																																																																																																																												1
TCTCTT	3																																																																																																																												3
TCTTCA	2																																																																																																																												2
TCTTCC	2																																																																																																																												2
TCTTTC	1																																																																																																																												1
TCTTTT	11	1																																																																																																																											12
TGAAAT	1																																																																																																																												1
TGAAGA	1																																																																																																																												1
TGAAGG		1																																																																																																																											1
TGAATG	1																																																																																																																												1
TGACAA	1																																																																																																																												1
TGAGAT	2																																																																																																																												2
TGAGGT	3																																																																																																																												3
TGATAA	13	1																																																																																																																											14
TGATAG		1																																																																																																																											1
TGATAT	1																																																																																																																												1
TGATGC	1	1																																																																																																																											2
TGATGT	2																																																																																																																												2
TGATTA	1																																																																																																																												1
TGCAGC	2																																																																																																																												2
TGCAGT	1																																																																																																																												1
TGCATG	2																																																																																																																												2
TGCCGC	1																																																																																																																												1
TGCGGA	1																																																																																																																												1
TGCTAA	1		1																																																																																																																										2
TGCTAC	2																																																																																																																												2
TGCTGA	2																																																																																																																												2
TGCTGT	4																																																																																																																												4
TGGCGG	1																																																																																																																												1
TGGGCT	1																																																																																																																												1
TGGTAG	1																																																																																																																												1
TGGTGA	1																																																																																																																												1
TGGTTC	1																																																																																																																												1
TGTATA	2																																																																																																																												2
TGTATG	2																																																																																																																												2
TGTATT	1																																																																																																																												1
TGTGCA	1	2																																																																																																																											3
TGTGCG	1																																																																																																																												1
TGTGTA	10																																																																																																																												10
TGTGTC	2																																																																																																																												2
TGTTAA	1																																																																																																																												1
TGTTGA	1																																																																																																																												1
TGTTGC	5																																																																																																																												5
TGTTTT	2																																																																																																																												2
TTAAAA	6	1																																																																																																																											7
TTAAAT	5																																																																																																																												5
TTAAGA	1																																																																																																																												1
TTAATA	1																																																																																																																												1
TTAATC	1																																																																																																																												1
TTAATT	2																																																																																																																												2
TTACAA	1																																																																																																																												1
TTACTA	1																																																																																																																												1
TTAGCC	1																																																																																																																												1
TTAGGC								1																																																																																																																					1
TTAGGG			1																																																																																																																										1
TTAGTT	1																																																																																																																												1
TTATAT	1																																																																																																																												1
TTATCA	15	1																																																																																																																											16
TTATTG	2																																																																																																																												2
TTATTT	5																																																																																																																												5
TTCATC	2																																																																																																																												2
TTCCTT	1																																																																																																																												1
TTCGTA	1																																																																																																																												1
TTCTCA	1																																																																																																																												1
TTCTCT	2																																																																																																																												2
TTCTTT	5		1																																																																																																																										6
TTGAAA	1																																																																																																																												1
TTGAAC	1																																																																																																																												1
TTGATA	1																																																																																																																												1
TTGCTT	1																																																																																																																												1
TTGTAA	1																																																																																																																												1
TTGTCG	1																																																																																																																												1
TTGTTA	1																																																																																																																												1
TTGTTT	5																																																																																																																												5
TTTAAA	8																																																																																																																												8
TTTAAT	1																																																																																																																												1
TTTACC	1																																																																																																																												1
TTTAGA	1																																																																																																																												1
TTTAGG	1																																																																																																																												1
TTTATA	3																																																																																																																												3
TTTATT	8																																																																																																																												8
TTTCAG		1																																																																																																																											1
TTTCAT	2																																																																																																																												2
TTTCTA	1																																																																																																																												1
TTTCTC	2																																																																																																																												2
TTTCTG	1																																																																																																																												1
TTTCTT	8	1																																																																																																																											9
TTTGAA	1																																																																																																																												1
TTTGTA	1																																																																																																																												1
TTTGTT	9																																																																																																																												9
TTTTAA	11	1																																																																																																																											12
TTTTAC	1																																																																																																																												1
TTTTAT	9																																																																																																																												9
TTTTCA	1																																																																																																																												1
TTTTCC	2																																																																																																																												2
TTTTCT	5																																																																																																																												5
TTTTGT	5	1																																																																																																																											6
TTTTTA	20	1																																																																																																																											21
TTTTTC	17	2																																																																																																																											19
TTTTTG	6	1																																																																																																																											7

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1374	1063	924	873	822	675	583	565	483	444	351	326	316	252	257	227	192	197	163	151	152	110	107	107	102	83	89	70	85	69	68	53	59	54	44	46	38	44	48	37	29	37	28	25	26	22	17	23	22	20	11	11	17	12	12	15	9	12	9	8	7	5	8	6	9	1	2	2	4	4		3						1				2																									1	12123
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4	5	2	4	4	2	1	2	3	2	3	2		1			1		1		1																						1																																																		2															41
AC/GT	-	-	-	263	209	160	116	75	42	29	24	15	9	6	3	6	4	2	3	1	1	1	1	1	1	1		1	1		1			2					1																						1																																																																980
AG/CT	-	-	-	532	405	371	272	170	89	75	31	26	9	11	3	3		1	1			1											1																																																																																												2001
AT/AT	-	-	-	987	761	575	356	206	129	62	35	31	23	22	6	9	4	5	1	2		1			1																																																																																																				3216
CG/CG	-	-	-	1		1																																																																																																																							2
AAC/GTT	-	-	187	101	46	26	19	5	3	3	1		1	1	1		1																																																																																																												395
AAG/CTT	-	-	91	49	17	10	2	1	1																																																																																																																				171
AAT/ATT	-	-	1246	513	218	81	41	23	12	10	3	8	6	8	8	1	4	3	4	3	1	1	3	1	2		2		2				2		1			1																																																																																							2208
ACC/GGT	-	-	50	28	14	4		1		1																																																																																																																			98
ACG/CGT	-	-	2	2																																																																																																																									4
ACT/AGT	-	-	95	56	24	20	11	6	1		2		2		2			1			2	1						1				1																																																																																													225
AGC/CTG	-	-	64	51	24	6	2		1											1																																																																																																									149
AGG/CCT	-	-	31	13	7	4	1																																																																																																																						56
ATC/ATG	-	-	245	131	58	28	17	10	3	2	1									1											1																																																																																														497
CCG/CGG	-	-	1																																																																																																																										1
AAAC/GTTT	-	81	28	10	1																																																																																																																								120
AAAG/CTTT	-	141	27	7	1																																																																																																																								176
AAAT/ATTT	-	645	156	39	9	2	5	2	1	2	1	1			1	1		1							1																																																																																																				867
AACC/GGTT	-	7	1	4																																																																																																																									12
AACG/CGTT	-	5	1																																																																																																																										6
AACT/AGTT	-	7	2		1	1																																																																																																																							11
AAGC/CTTG	-	6	1																																																																																																																										7
AAGG/CCTT	-	17	3	2																																																																																																																									22
AAGT/ACTT	-	14																																																																																																																											14
AATC/ATTG	-	53	10	7	2																																																																																																																								72
AATG/ATTC	-	98	20	5	3			1																																																																																																																					127
AATT/AATT	-	316	62	6	2			1																																																																																																																					387
ACAG/CTGT	-	61	24	2	1																																																																																																																								88
ACAT/ATGT	-	49	14	1		1																																																																																																																							65
ACCC/GGGT	-	2																																																																																																																											2
ACCG/CGGT	-	3	1																																																																																																																										4
ACCT/AGGT	-	4	1	1																																																																																																																									6
ACGC/CGTG	-	5	5																																																																																																																										10
ACGG/CCGT	-	3	1																																																																																																																										4
ACGT/ACGT	-	1																																																																																																																											1
ACTC/AGTG	-	6																																																																																																																											6
ACTG/AGTC	-	5	3							1																																																																																																																			9
AGAT/ATCT	-	16	3		2																																																																																																																								21
AGCT/AGCT	-	4	1																																																																																																																										5
AGGC/CCTG	-	1																																																																																																																											1
AGGG/CCCT	-	3	1																																																																																																																										4
ATCC/ATGG	-	26	3	3	3	1	1								1																																																																																																														38
ATCG/ATCG	-	3																																																																																																																											3
ATGC/ATGC	-	17		3																																																																																																																									20
CCCG/CGGG	-	1																																																																																																																											1
AAAAC/GTTTT	187	19	3																																																																																																																										209
AAAAG/CTTTT	426	42	6	2																																																																																																																									476
AAAAT/ATTTT	513	55	6				1																																																																																																																						575
AAACC/GGTTT	5																																																																																																																												5
AAACG/CGTTT	8	1																																																																																																																											9
AAACT/AGTTT	13	1																																																																																																																											14
AAAGC/CTTTG	11																																																																																																																												11
AAAGG/CCTTT	44	1						1																																																																																																																					46
AAAGT/ACTTT	10																																																																																																																												10
AAATC/ATTTG	31	1																																																																																																																											32
AAATG/ATTTC	219	17	4	1			1																																																																																																																						242
AAATT/AATTT	348	31	5	1	1																																																																																																																								386
AACAC/GTGTT	1																																																																																																																												1
AACAG/CTGTT	7																																																																																																																												7
AACAT/ATGTT	10	1																																																																																																																											11
AACCC/GGGTT	1																																																																																																																												1
AACCG/CGGTT		1																																																																																																																											1
AACCT/AGGTT	1																																																																																																																												1
AACGC/CGTTG	3	1																																																																																																																											4
AACGG/CCGTT	7																																																																																																																												7
AACGT/ACGTT	5																																																																																																																												5
AACTC/AGTTG	6																																																																																																																												6
AACTG/AGTTC	14	1	1																																																																																																																										16
AACTT/AAGTT	4																																																																																																																												4
AAGAC/CTTGT	6																																																																																																																												6
AAGAG/CTCTT	19																																																																																																																												19
AAGAT/ATCTT	17	3																																																																																																																											20
AAGCG/CGCTT	1																																																																																																																												1
AAGCT/AGCTT	5	1																																																																																																																											6
AAGGC/CCTTG	1																																																																																																																												1
AAGGG/CCCTT	3	2																																																																																																																											5
AAGGT/ACCTT	5	1																																																																																																																											6
AAGTC/ACTTG	3																																																																																																																												3
AAGTG/ACTTC	7	3	1																																																																																																																										11
AATAC/ATTGT	4																																																																																																																												4
AATAG/ATTCT	8	1																																																																																																																											9
AATAT/ATATT	96	12	3	1	1	1	1	1	1			1																																																																																																																	118
AATCC/ATTGG	6																																																																																																																												6
AATCG/ATTCG	6	1	1																																																																																																																										8
AATCT/AGATT	8	2																																																																																																																											10
AATGC/ATTGC	9	1																																																																																																																											10
AATGG/ATTCC	20	3	1																																																																																																																										24
AATGT/ACATT	5	1																																																																																																																											6
AATTC/AATTG	59	5																																																																																																																											64
ACACC/GGTGT	1	1	1																																																																																																																										3
ACACT/AGTGT	3	1																																																																																																																											4
ACAGC/CTGTG	3																																																																																																																												3
ACAGG/CCTGT	2																																																																																																																												2
ACAGT/ACTGT	2																																																																																																																												2
ACATC/ATGTG	8	2																																																																																																																											10
ACATG/ATGTC	4	1																																																																																																																											5
ACCAG/CTGGT	2																																																																																																																												2
ACCAT/ATGGT	1																																																																																																																												1
ACCCC/GGGGT	1																																																																																																																												1
ACCCT/AGGGT	1	2																																																																																																																											3
ACCGC/CGGTG	1																																																																																																																												1
ACCGT/ACGGT	1																																																																																																																												1
ACCTC/AGGTG	4																																																																																																																												4
ACCTG/AGGTC	3	1																																																																																																																											4
ACGAG/CGTCT	1																																																																																																																												1
ACGAT/ATCGT	2																																																																																																																												2
ACGCG/CGCGT	1																																																																																																																												1
ACGCT/AGCGT	2																																																																																																																												2
ACGGG/CCCGT	1																																																																																																																												1
ACGTC/ACGTG	4																																																																																																																												4
ACTAG/AGTCT	10																																																																																																																												10
ACTAT/AGTAT	2																																																																																																																												2
ACTCC/AGTGG	1																																																																																																																												1
ACTCG/AGTCG	1																																																																																																																												1
ACTGC/AGTGC	1																																																																																																																												1
ACTGG/AGTCC	1																																																																																																																												1
AGAGG/CCTCT	6	1																																																																																																																											7
AGATC/ATCTG	8	1																																																																																																																											9
AGATG/ATCTC	15		1																																																																																																																										16
AGCAT/ATGCT	3																																																																																																																												3
AGCCG/CGGCT	2																																																																																																																												2
AGCCT/AGGCT	1																																																																																																																												1
AGGAT/ATCCT	3																																																																																																																												3
AGGCG/CCTCG	2																																																																																																																												2
AGGGG/CCCCT	8		1																																																																																																																										9
ATATC/ATATG	112	33	8	2																																																																																																																									155
ATCCC/ATGGG	2																																																																																																																												2
ATCCG/ATCGG	2																																																																																																																												2
AAAAAC/GTTTTT	73	9	1																																																																																																																										83
AAAAAG/CTTTTT	130	5	1																																																																																																																										136
AAAAAT/ATTTTT	138	6																																																																																																																											144
AAAACG/CGTTTT	2																																																																																																																												2
AAAACT/AGTTTT	3																																																																																																																												3
AAAAGC/CTTTTG	3	2																																																																																																																											5
AAAAGG/CCTTTT	13																																																																																																																												13
AAAAGT/ACTTTT	4																																																																																																																												4
AAAATC/ATTTTG	1																																																																																																																												1
AAAATG/ATTTTC	13	1																																																																																																																											14
AAAATT/AATTTT	61	4																																																																																																																											65
AAACAG/CTGTTT	2																																																																																																																												2
AAACAT/ATGTTT	1																																																																																																																												1
AAACCT/AGGTTT	1																																																																																																																												1
AAACTG/AGTTTC		1																																																																																																																											1
AAAGAG/CTCTTT	30	2																																																																																																																											32
AAAGCT/AGCTTT	1																																																																																																																												1
AAAGGT/ACCTTT	1																																																																																																																												1
AAAGTG/ACTTTC	1																																																																																																																												1
AAAGTT/AACTTT	1																																																																																																																												1
AAATAC/ATTTGT	5																																																																																																																												5
AAATAG/ATTTCT	2																																																																																																																												2
AAATAT/ATATTT	22	1								1																																																																																																																			24
AAATCC/ATTTGG	2																																																																																																																												2
AAATCT/AGATTT	1																																																																																																																												1
AAATGC/ATTTGC	1																																																																																																																												1
AAATGG/ATTTCC	2																																																																																																																												2
AAATTC/AATTTG	5																																																																																																																												5
AAATTG/AATTTC	7																																																																																																																												7
AAATTT/AAATTT	42	1																																																																																																																											43
AACAAT/ATTGTT	20																																																																																																																												20
AACAGC/CTGTTG	19	6	1																																																																																																																										26
AACAGT/ACTGTT	4																																																																																																																												4
AACATC/ATGTTG	5																																																																																																																												5
AACATT/AATGTT	3																																																																																																																												3
AACCAC/GGTTGT	1																																																																																																																												1
AACCAG/CTGGTT	1																																																																																																																												1
AACCCC/GGGGTT	1																																																																																																																												1
AACCCT/AGGGTT			2																																																																																																																										2
AACCGG/CCGGTT	1																																																																																																																												1
AACCTC/AGGTTG	3																																																																																																																												3
AACGAC/CGTTGT	5																																																																																																																												5
AACGAT/ATCGTT	7	1																																																																																																																											8
AACGGC/CCGTTG	1																																																																																																																												1
AACGTC/ACGTTG	1																																																																																																																												1
AACGTG/ACGTTC	1																																																																																																																												1
AACTAC/AGTTGT	1																																																																																																																												1
AACTAT/AGTTAT	1																																																																																																																												1
AACTCG/AGTTCG	1																																																																																																																												1
AACTGC/AGTTGC	2																																																																																																																												2
AACTTG/AAGTTC	2																																																																																																																												2
AAGAAT/ATTCTT	2																																																																																																																												2
AAGACG/CGTCTT	1																																																																																																																												1
AAGAGG/CCTCTT	7																																																																																																																												7
AAGATG/ATCTTC	8																																																																																																																												8
AAGATT/AATCTT	3																																																																																																																												3
AAGCCC/CTTGGG	1																																																																																																																												1
AAGCCT/AGGCTT	2							1																																																																																																																					3
AAGCGG/CCGCTT	1																																																																																																																												1
AAGCTC/AGCTTG	1																																																																																																																												1
AAGCTG/AGCTTC	1																																																																																																																												1
AAGGAG/CCTTCT	3	1																																																																																																																											4
AAGGCT/AGCCTT	1																																																																																																																												1
AAGGGG/CCCCTT		1																																																																																																																											1
AAGGGT/ACCCTT	2																																																																																																																												2
AAGGTG/ACCTTC		1																																																																																																																											1
AAGTGG/ACTTCC	1																																																																																																																												1
AATACC/ATTGGT	1																																																																																																																												1
AATACG/ATTCGT	1																																																																																																																												1
AATACT/AGTATT	4	1																																																																																																																											5
AATAGC/ATTGCT	3	1																																																																																																																											4
AATAGT/ACTATT	15	2	1					1								1																																																																																																													20
AATATC/ATATTG	3																																																																																																																												3
AATATG/ATATTC	3																																																																																																																												3
AATATT/AATATT	6																																																																																																																												6
AATCAG/ATTCTG	1																																																																																																																												1
AATCAT/ATGATT	5	1																																																																																																																											6
AATCCC/ATTGGG	1																																																																																																																												1
AATCGG/ATTCCG	1																																																																																																																												1
AATCTC/AGATTG	2																																																																																																																												2
AATCTG/AGATTC	1																																																																																																																												1
AATGAC/ATTGTC	6																																																																																																																												6
AATGAG/ATTCTC	3																																																																																																																												3
AATGAT/ATCATT	108	14	1																																																																																																																										123
AATGCT/AGCATT	1		1																																																																																																																										2
AATGGT/ACCATT	1																																																																																																																												1
AATGTC/ACATTG	1																																																																																																																												1
AATGTG/ACATTC	4																																																																																																																												4
AATTAC/AATTGT	5																																																																																																																												5
AATTAG/AATTCT		1																																																																																																																											1
AATTAT/AATTAT	11	2																																																																																																																											13
ACACAG/CTGTGT	8																																																																																																																												8
ACACAT/ATGTGT	31	1																																																																																																																											32
ACACCC/GGGTGT	1																																																																																																																												1
ACACGC/CGTGTG	9	3	1																																																																																																																										13
ACACGT/ACGTGT	1																																																																																																																												1
ACAGAG/CTCTGT	1																																																																																																																												1
ACAGCT/AGCTGT	2																																																																																																																												2
ACAGGT/ACCTGT	2																																																																																																																												2
ACATAT/ATATGT	13	1						1																																																																																																																					15
ACATGC/ATGTGC	5	2																																																																																																																											7
ACCACT/AGTGGT	3																																																																																																																												3
ACCAGC/CTGGTG		1																																																																																																																											1
ACCATC/ATGGTG	6																																																																																																																												6
ACCCAT/ATGGGT	1																																																																																																																												1
ACCCGC/CGGGTG	1																																																																																																																												1
ACCGCC/CGGTGG	3																																																																																																																												3
ACCTCC/AGGTGG	5	2																																																																																																																											7
ACCTCG/AGGTCG	1																																																																																																																												1
ACCTGC/AGGTGC	2																																																																																																																												2
ACGAGG/CCTCGT	1																																																																																																																												1
ACGATG/ATCGTC	4																																																																																																																												4
ACGCAT/ATGCGT	3																																																																																																																												3
ACGGCC/CCGTGG		1																																																																																																																											1
ACGGCG/CCGTCG	1																																																																																																																												1
ACGGCT/AGCCGT	1																																																																																																																												1
ACGGGC/CCCGTG	1																																																																																																																												1
ACGGGG/CCCCGT	1																																																																																																																												1
ACGTAT/ACGTAT	2																																																																																																																												2
ACTAGG/AGTCCT	1																																																																																																																												1
ACTAGT/ACTAGT	1																																																																																																																												1
ACTATC/AGTGAT	7	1																																																																																																																											8
ACTATG/AGTCAT	1																																																																																																																												1
ACTCCC/AGTGGG	1																																																																																																																												1
ACTGAT/AGTATC	1	1																																																																																																																											2
ACTGCT/AGCAGT	16	2	3																																																																																																																										21
AGAGGG/CCCTCT	6	2																																																																																																																											8
AGATAT/ATATCT	2	1																																																																																																																											3
AGATCG/ATCTCG	1																																																																																																																												1
AGCAGG/CCTGCT	1																																																																																																																												1
AGCATC/ATGCTG	3	1																																																																																																																											4
AGCGGC/CCGCTG	3																																																																																																																												3
AGCTCC/AGCTGG	2																																																																																																																												2
AGCTGC/AGCTGC	7																																																																																																																												7
AGGATG/ATCCTC	1																																																																																																																												1
AGGGGG/CCCCCT	2																																																																																																																												2
ATATCC/ATATGG	1																																																																																																																												1
ATCATG/ATCATG	2																																																																																																																												2
ATCCGC/ATGCGG	1	1																																																																																																																											2
ATCGCC/ATGGCG	1																																																																																																																												1
