Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-3/megassr/results/hub_GCA_002224005.1/fasta/hub_GCA_002224005.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              68
Total size of examined sequences (bp):           18452313
Total number of identified SSRs:                 1343
Number of SSR containing sequences:              47
Number of sequences containing more than 1 SSR:  43
Number of SSRs present in compound formation:    96


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	71
2	221
3	397
4	99
5	168
6	387

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	3	2	1	6	2	3	4		2	2						1	1																																					1											29
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		2	1	1		1									1									1																																										7
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	1																1																																															1	5
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	6	3	2	4	1	1	1	2	4	2		1					1		1				1																																											30
AC	-	-	-	3	2	1	1		1																																																																										8
AG	-	-	-	13	2	2																																																																													17
AT	-	-	-	23	13	14	5	4	4	4	4	1																																																																							72
CA	-	-	-	5	2	2		1																																																																											10
CT	-	-	-	10	6	3				1											1							1																																																							22
GA	-	-	-	10	4	2	1																																																																												17
GC	-	-	-	2																																																																															2
GT	-	-	-	5			1																																																																												6
TA	-	-	-	20	13	3	4		1		1								1																																																																43
TC	-	-	-	11		1		1																																																																											13
TG	-	-	-	4	6							1																																																																							11
AAC	-	-	1		1																																																																														2
AAG	-	-	13	2	1																																																																														16
AAT	-	-	7	1	1																																																																														9
ACA	-	-	5				1																																																																												6
ACC	-	-	5	2																																																																															7
ACG	-	-	1	1																																																																															2
ACT	-	-	2																																																																																2
AGA	-	-	12	2	1				1																																																																										16
AGC	-	-	5	5							1																																																																								11
AGG	-	-	4		1			1																																																																											6
AGT	-	-	2																																																																																2
ATA	-	-	2	3					1																																																																										6
ATC	-	-	4					1																																																																											5
ATG	-	-	3	2																																																																															5
ATT	-	-	1																																																																																1
CAA	-	-	7		1																																																																														8
CAC	-	-	3	2																																																																															5
CAG	-	-	5	4	2			1																																																																											12
CAT	-	-	5	1	1	1																																																																													8
CCA	-	-	3	1	5			1																																																																											10
CCG	-	-	4		1																																																																														5
CCT	-	-	6	1																																																																															7
CGA	-	-	2	1		1																																																																													4
CGC	-	-	3																																																																																3
CGG	-	-	3	2																																																																															5
CGT	-	-	1	1	1																																																																														3
CTA	-	-		1																																																																															1
CTC	-	-	2	3	1																																																																														6
CTG	-	-	3	2																																																																															5
CTT	-	-	9	3	1	1																																																																													14
GAA	-	-	11	6																																																																															17
GAC	-	-	2		1																																																																														3
GAG	-	-	5	1	1																																																																														7
GAT	-	-	4	2	1	1																																																																													8
GCA	-	-	2	3	1	1																																																																													7
GCC	-	-	2																																																																																2
GCG	-	-	3																																																																																3
GCT	-	-	9	5	1	1																																																																													16
GGA	-	-	3																																																																																3
GGC	-	-	2	1																																																																															3
GGT	-	-	7	2	1																																																																														10
GTA	-	-	1																										2																																																						3
GTC	-	-	2	1																																																																															3
GTG	-	-	7	1		1	1																																																																												10
GTT	-	-	1	3	1																																																																														5
TAA	-	-	2	2				1																																																																											5
TAC	-	-	1	1																																																																															2
TAG	-	-		1																																																																															1
TCA	-	-	6	3																																																																															9
TCC	-	-	12	2								1																																																																							15
TCG	-	-	1	2																																																																															3
TCT	-	-	13	1	1	1					1																																																																								17
TGA	-	-	6		1																																																																														7
TGC	-	-	6	2	3																																																																														11
TGG	-	-	4	2																																																																															6
TGT	-	-	5	2	1	1									1																																																																				10
TTA	-	-	2	2																																																																															4
TTC	-	-	7	1	1																																																																														9
TTG	-	-	3	1	2																																																																														6
AAAC	-	1																																																																																	1
AAAG	-	2																																																																																	2
AAAT	-	1		1																																																																															2
AACA	-	2																																																																																	2
AACC	-	1																																																																																	1
AACG	-	1																																																																																	1
AAGA	-		1																																																																																1
AATA	-	3																	1																																																																4
ACGC	-	1																																																																																	1
AGGA	-	7		1																																																																															8
AGGG	-	1																																																																																	1
ATAA	-	1	2																																																																																3
ATCC	-	1																																																																																	1
ATGA	-	1	1																																																																																2
ATGC	-	1																																																																																	1
ATGG	-	2																																																																																	2
ATTT	-	1																		1																																																															2
CAAA	-	1	1																																																																																2
CAAC	-	1																																																																																	1
CAAG	-	1																																																																																	1
CATC	-						1																																																																												1
CGAG	-	1																																																																																	1
CGGA	-	1																																																																																	1
CGTC	-	1																																																																																	1
CTGC	-	1																																																																																	1
CTTC	-	1	1																																																																																2
CTTT	-	3																																																																																	3
GAAA	-	3	1	1																																																																															5
GAAG	-	2	2																																																																																4
GAAT	-		1																																																																																1
GACG	-	1																																																																																	1
GATG	-		1																																																																																1
GCAT	-	1																																																																																	1
GCCG	-	1																																																																																	1
GGAC	-	1																																																																																	1
GGAT	-	1																																																																																	1
GGTA	-		1																																																																																1
GTTT	-	1																																																																																	1
TAAA	-	1												1																																																																					2
TAAT	-	1																																																																																	1
TATT	-		1	1																																																																															2
TCAA	-	1																																																																																	1
TCAG	-				1																																																																														1
TCCA	-	2			1																																																																														3
TCCG	-	1																																																																																	1
TCCT	-	3																																																																																	3
TGCA	-	1																																																																																	1
TGCT	-	1																																																																																	1
TGGA	-	1																																																																																	1
TTAT	-	1	2																																																																																3
TTCC	-	2	1																																																																																3
TTCT	-	1																																																																																	1
TTGC	-	1																																																																																	1
TTTA	-	5	2																																																																																7
AAAAG	1	1																																																																																	2
AAAAT	4																																																																																		4
AAAGA	1																																																																																		1
AAAGG	1																																																																																		1
AAATA		1																																																																																	1
AACCA	1																																																																																		1
AAGAA	3																																																																																		3
AAGAG	2																																																																																		2
AAGGG	1																																																																																		1
AAGTG	1	1																																																																																	2
AATAA	1																																																																																		1
AATAC	1																																																																																		1
AATCA	1	1																																																																																	2
AATCC	1																																																																																		1
AATCG	1																																																																																		1
AATGT	1																																																																																		1
AATTA	1																																																																																		1
ACAAA	1																																																																																		1
ACCCT	1																																																																																		1
ACCGG	1																																																																																		1
ACGCG	4																																																																																		4
ACGGT	1																																																																																		1
ACTAT	1																																																																																		1
AGAAC	1																																																																																		1
AGAGA	1																																																																																		1
AGATG	1																																																																																		1
AGATT	3				1																																																																														4
AGCCA		1																																																																																	1
AGGGA	1																																																																																		1
AGGGG	1	1																																																																																	2
AGGTT		1																																																																																	1
ATAAA	1																																																																																		1
ATATT	1																																																																																		1
ATCTC	1																																																																																		1
ATGGA	1																																																																																		1
ATGTA	2																																																																																		2
ATTAC	1																																																																																		1
ATTAT	1																																																																																		1
ATTGA		1																																																																																	1
ATTGC	1																																																																																		1
ATTTT	1																																																																																		1
CAGTA	1																																																																																		1
CATCT	1																																																																																		1
CATGT	1																																																																																		1
CATTA	1	1																																																																																	2
CCACT	1																																																																																		1
CCATC	1																																																																																		1
CCCAA	1																																																																																		1
CCCCA	1																																																																																		1
CCCCG	1																																																																																		1
CCGCA	1																																																																																		1
CCTAC		1																																																																																	1
CGACT	1																																																																																		1
CGATG	1																																																																																		1
CGATT	1																																																																																		1
CGCGT	2																																																																																		2
CTAAC	1																																																																																		1
CTAAT	3																																																																																		3
CTATG	1																																																																																		1
CTCTT	1																																																																																		1
CTGCC	1																																																																																		1
CTGGA	1																																																																																		1
CTTCC	1																																																																																		1
CTTCT	1																																																																																		1
CTTTC										1																																																																									1
CTTTT	1	1																																																																																	2
GAAAA	1																																																																																		1
GAAAG	1																																																																																		1
GAATA	1																																																																																		1
GACAA	1																																																																																		1
GACAC	1																																																																																		1
GACGC	3																																																																																		3
GAGAA	1																																																																																		1
GAGAT	2																																																																																		2
GATGT	1																																																																																		1
GATTA	1																																																																																		1
GCATA	1																																																																																		1
GCATC	1																																																																																		1
GCCAC	1																																																																																		1
GGAAA	2																																																																																		2
GGAGA	1																																																																																		1
GGAGG	1																																																																																		1
GGATC	1																																																																																		1
GGCAG	1																																																																																		1
GGGAA	1																																																																																		1
GGGAG	1																																																																																		1
GGGGA	3																																																																																		3
GGGTG	1																																																																																		1
GGGTT	1																																																																																		1
GGTAC	1																																																																																		1
GGTAT	1																																																																																		1
GTATC	1																																																																																		1
GTCAT	1																																																																																		1
GTTTT	1																																																																																		1
TAAAA	1																																																																																		1
TAAAT		1																																																																																	1
TACAT	1																																																																																		1
TAGAA	1																																																																																		1
TATTT	3																																																																																		3
TCAGA		1																																																																																	1
TCCAA		1																																																																																	1
TCCGA	1																																																																																		1
TCCTA	1																																																																																		1
TCCTT	1																																																																																		1
TCGAG	1																																																																																		1
TCTAA	5																																																																																		5
TCTGC	1																																																																																		1
TCTTT	1																																																																																		1
TGAGA	1																																																																																		1
TGATC		1																																																																																	1
TGGAT	1																																																																																		1
TGTCG	1																																																																																		1
TGTTT	1																																																																																		1
TTATA	2	1																																																																																	3
TTCCA	1																																																																																		1
TTCCT	1																																																																																		1
TTGTA	2																																																																																		2
TTTAC	1																																																																																		1
TTTAT		1																																																																																	1
TTTCA	1																																																																																		1
TTTCG	2																																																																																		2
TTTGT	1																																																																																		1
TTTTA	1	1																																																																																	2
TTTTC	3																																																																																		3
TTTTG	2	1																																																																																	3
AAAAAC	1																																																																																		1
AAAAAT		1																																																																																	1
AAAATA	1																																																																																		1
AAAGAA	1																																																																																		1
AAAGGA	1																																																																																		1
AAAGGT		1																																																																																	1
AAATAT	1																																																																																		1
AACAAA	1																																																																																		1
AACAGC	1																																																																																		1
AAGAAA	1																																																																																		1
AAGCCC		1																																																																																	1
AAGGAA	1																																																																																		1
AAGGAG	1																																																																																		1
AAGGGA	1																																																																																		1
AAGGGG	1																																																																																		1
AAGTGC	1																																																																																		1
AATCCC		1																																																																																	1
AATTAT	1																																																																																		1
ACAATG	1																																																																																		1
ACAATT	1																																																																																		1
ACATGA			1																																																																																1
ACCAAG	1																																																																																		1
ACCCAC	1																																																																																		1
ACCCAG	1																																																																																		1
ACCTCC	1																																																																																		1
ACCTGC	1																																																																																		1
ACGACC	1																																																																																		1
ACGGCA		1																																																																																	1
AGAAGC	1																																																																																		1
AGAAGG	1																																																																																		1
AGAGAA							1																																																																												1
AGAGAC	1																																																																																		1
AGATGT	1																																																																																		1
AGCAAA		1																																																																																	1
AGCAGA	1																																																																																		1
AGCAGG	1																																																																																		1
AGCCAA	2																																																																																		2
AGCGGT	1																																																																																		1
AGCTTC	1																																																																																		1
AGCTTG	1																																																																																		1
AGGGGG	1																																																																																		1
AGGTGG	1																																																																																		1
AGTATT	1																																																																																		1
ATAATG	1																																																																																		1
ATATAC													1																																																																						1
ATCACC	1																																																																																		1
ATCCCA	1																																																																																		1
ATCCTC		1																																																																																	1
ATGAAG	1																																																																																		1
ATGGCA	1																																																																																		1
ATGGTG	1																																																																																		1
ATGTAG	1																																																																																		1
ATTCCC	1																																																																																		1
ATTTGC			1																																																																																1
ATTTTT	1																																																																																		1
CAAACA		1																																																																																	1
CAACAG	1																																																																																		1
CAAGCA	2																																																																																		2
CAAGCT	1	2																																																																																	3
CAAGGC	1																																																																																		1
CAATCG	1																																																																																		1
CACCAT	1																																																																																		1
CACCTC	1	2																																																																																	3
CACTAT	1																																																																																		1
CAGAAC	1																																																																																		1
CAGAAG	1																																																																																		1
CAGACA	1																																																																																		1
CAGCAA	3		1																																																																																4
CAGCTC	2																																																																																		2
CAGTCT	1																																																																																		1
CATCAC	1																																																																																		1
CATCGG	1																																																																																		1
CATGGG		1																																																																																	1
CCAAAC	1																																																																																		1
CCAACA	1			1																																																																															2
CCAAGT	1																																																																																		1
CCACAG	1																																																																																		1
CCACCG	1																																																																																		1
CCAGCC	1																																																																																		1
CCATAG	1																																																																																		1
CCATCC	1	1																																																																																	2
CCATTC	1																																																																																		1
CCATTT	1																																																																																		1
CCCAAA		1																																																																																	1
CCCAGA			1																																																																																1
CCCAGC	1																																																																																		1
CCCAGT	1																																																																																		1
CCCATA	1																																																																																		1
CCCATC	1	1																																																																																	2
CCCCCA	1																																																																																		1
CCCCGC	1																																																																																		1
CCCCTT	1																																																																																		1
CCCGCC	1																																																																																		1
CCCTTT	1																																																																																		1
CCGATC	1																																																																																		1
CCGCCA	1																																																																																		1
CCGGCA	1																																																																																		1
CCGTCG	1																																																																																		1
CCTCAA	1																																																																																		1
CCTCAC	1																																																																																		1
CCTCAT	1																																																																																		1
CCTCCA	2		1																																																																																3
CCTCTC	3	1																																																																																	4
CCTGAG	1																																																																																		1
CCTGCA	1																																																																																		1
CCTGTT	1																																																																																		1
CCTTTT	1																																																																																		1
CGAACC	1																																																																																		1
CGACAC			1																																																																																1
CGAGGA	2																																																																																		2
CGAGTC	1																																																																																		1
CGATGC	1																																																																																		1
CGCCGG	1																																																																																		1
CGCCGT	1																																																																																		1
CGCCTG	1																																																																																		1
CGCGAC	1																																																																																		1
CGGAGA	1																																																																																		1
CGGGGG	1																																																																																		1
CGGTCC	1																																																																																		1
CGTCCT	1																																																																																		1
CGTCTG	2																																																																																		2
CGTCTT	1																																																																																		1
CTAAGT		1																																																																																	1
CTACCA	1																																																																																		1
CTATGG		1																																																																																	1
CTCAAG	1																																																																																		1
CTCAGC	1																																																																																		1
CTCATC	2											1																																																																							3
CTCCCC	2	2																																																																																	4
CTCGCC	1																																																																																		1
CTCTCC		1																																																																																	1
CTCTGG	1																																																																																		1
CTCTTC					1																																																																														1
CTGACT	1																																																																																		1
CTGATC		1																																																																																	1
CTGCAC	1																																																																																		1
CTGGTC	1																																																																																		1
CTGTCC	1																																																																																		1
CTGTTG	2																																																																																		2
CTTATC	1																																																																																		1
CTTCCC	1	1																																																																																	2
CTTCGT						1																																																																													1
CTTGCC	1																																																																																		1
CTTGGT	1																																																																																		1
CTTTGC		1																																																																																	1
CTTTTC	1																																																																																		1
CTTTTT	1																																																																																		1
GAAAAA			1																																																																																1
GAACCT	1																																																																																		1
GAACGA					1																																																																														1
GAAGAG	2			1																																																																															3
GAAGAT	1																																																																																		1
GAAGGA	1																																																																																		1
GAATCC			1																																																																																1
GACGAG	1																																																																																		1
GACGAT	1																																																																																		1
GAGAAC	1																																																																																		1
GAGATG		1																																																																																	1
GAGCAG	2																																																																																		2
GAGCGT	1																																																																																		1
GAGGAA	5											1																																																																							6
GAGGCT	1																																																																																		1
GAGGGT		1																																																																																	1
GATAAA	1																																																																																		1
GATCCG		1																																																																																	1
GATCCT	1																																																																																		1
GATGAA	1																																																																																		1
GATGTC	1																																																																																		1
GATTCT				1	1																																																																														2
GATTTT	1																																																																																		1
GCAACA	1																																																																																		1
GCAACC	1																																																																																		1
GCACAA	1																																																																																		1
GCACAC	1																																																																																		1
GCACCA	1																																																																																		1
GCACCC	1																																																																																		1
GCAGAA	1																																																																																		1
GCAGGC	1																																																																																		1
GCCACA	1																																																																																		1
GCCGAC	1																																																																																		1
GCCTGA	1																																																																																		1
GCGTTT	1																																																																																		1
GCTGAG	1																																																																																		1
GCTGAT	1																																																																																		1
GCTGGT	1																																																																																		1
GCTTCC	1																																																																																		1
GCTTGA	1																																																																																		1
GGAAAA	1																																																																																		1
GGAAGG	1																																																																																		1
GGACGA	2																																																																																		2
GGAGAA		1																																																																																	1
GGAGAG	1																																																																																		1
GGAGCA	1																																																																																		1
GGAGCG	1																																																																																		1
GGAGCT						1																																																																													1
GGAGGC	1																																																																																		1
GGAGGG	1																																																																																		1
GGAGGT	1																																																																																		1
GGCCCG	1																																																																																		1
GGCCTC	1																																																																																		1
GGCGAC	1																																																																																		1
GGCGAT	1																																																																																		1
GGCGCA	1																																																																																		1
GGCGCC	1																																																																																		1
GGCGGA	1																																																																																		1
GGCGGT		1																																																																																	1
GGCTCA	1	1																																																																																	2
GGGAAG	1																																																																																		1
GGGACT	1																																																																																		1
GGGAGG	1	1																																																																																	2
GGGATG	1		1																																																																																2
GGGCAA	1	1																																																																																	2
GGGCAT	1																																																																																		1
GGGCGA	1																																																																																		1
GGGGAG	1																																																																																		1
GGGGAT	1																																																																																		1
GGGGGA	6	1																																																																																	7
GGGGGC	1																																																																																		1
GGGGGT	1																																																																																		1
GGGTGC	1																																																																																		1
GGTAGT	1																																																																																		1
GGTCGC	1																																																																																		1
GGTGGA	1																																																																																		1
GGTGGC	1																																																																																		1
GGTTCA	1																																																																																		1
GGTTCT	1																																																																																		1
GGTTTC	1																																																																																		1
GTACCC		1																																																																																	1
GTCCGA	1																																																																																		1
GTCGGA	1																																																																																		1
GTCTCG	1																																																																																		1
GTCTCT	2																																																																																		2
GTGCCC	1																																																																																		1
GTTCCA	1																																																																																		1
GTTCTT	1																																																																																		1
GTTGCC	1																																																																																		1
TAAGTC	1																																																																																		1
TACATT	1																																																																																		1
TACCCA	1																																																																																		1
TACCGG	1																																																																																		1
TACCGT	1																																																																																		1
TAGCAT		1																																																																																	1
TAGGAG	1																																																																																		1
TAGGAT	1																																																																																		1
TATTTT	2																																																																																		2
TCAACA	2																																																																																		2
TCACCT	1																																																																																		1
TCAGAG	1																																																																																		1
TCAGAT	1																																																																																		1
TCATCC	2																																																																																		2
TCATCT	1																																																																																		1
TCATTG		1																																																																																	1
TCATTT	1																																																																																		1
TCCACC	1																																																																																		1
TCCATT	1																																																																																		1
TCCCAA	1																																																																																		1
TCCCCC	1																																																																																		1
TCCCGC	1																																																																																		1
TCCCTC			1																																																																																1
TCCGCT	1																																																																																		1
TCCTCA		2	1																																																																																3
TCCTCT	1																																																																																		1
TCCTTA	1																																																																																		1
TCCTTC	2																																																																																		2
TCCTTG	1																																																																																		1
TCCTTT	1																																																																																		1
TCGCAT	1																																																																																		1
TCGCTG	1																																																																																		1
TCTAAA	2																																																																																		2
TCTAAC		1																																																																																	1
TCTCAG	1																																																																																		1
TCTCCC	3																																																																																		3
TCTCTG	1																																																																																		1
TCTCTT	1																																																																																		1
TCTGGG			1																																																																																1
TCTGGT	1																																																																																		1
TCTTCA	2																																																																																		2
TCTTCC	2	2																																																																																	4
TCTTCG	1																																																																																		1
TCTTGT													1																																																																						1
TCTTTT	1																																																																																		1
TGACCT	1																																																																																		1
TGACGA		1																																																																																	1
TGAGCC	1																																																																																		1
TGATTT	1																																																																																		1
TGCAAC	1																																																																																		1
TGCCCC	1																																																																																		1
TGCCTT	1																																																																																		1
TGCGAG	1																																																																																		1
TGCTCG	1																																																																																		1
TGGCTC	1																																																																																		1
TGGGAT	2																																																																																		2
TGGGTT		1																																																																																	1
TGGTGC	1																																																																																		1
TGGTGT	1																																																																																		1
TGTCAT	1																																																																																		1
TGTCCT	1																																																																																		1
TGTTGA	1																																																																																		1
TGTTGC		1																																																																																	1
TGTTTT	1																																																																																		1
TTACAA	1																																																																																		1
TTAGGC	1																																																																																		1
TTCACA	1																																																																																		1
TTCAGG		1																																																																																	1
TTCATC	1																																																																																		1
TTCCCC	1																																																																																		1
TTCCCT	1																																																																																		1
TTCCTT	1																																																																																		1
TTCTCC	2																																																																																		2
TTCTCT													2																																																																						2
TTCTTG														1																																																																					1
TTGCCC	1																																																																																		1
TTGGCG	1																																																																																		1
TTTATT	1																																																																																		1
TTTCCC	1																																																																																		1
TTTGAC		1																																																																																	1
TTTGGG	1																																																																																		1
TTTGGT	1																																																																																		1
TTTGTC			1																																																																																1
TTTTTA	2																																																																																		2
TTTTTC	1																																																																																		1
TTTTTG	1																																																																																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	7	6	4	5	7	3	4	6	4	4	2	1					2	1	1				1																																1											59
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	3	1	1		1									1			1						1																																									1	12
AC/GT	-	-	-	17	10	3	2	1	1			1																																																																							35
AG/CT	-	-	-	44	12	8	1	1		1											1							1																																																							69
AT/AT	-	-	-	43	26	17	9	4	5	4	5	1							1																																																																115
CG/CG	-	-	-	2																																																																															2
AAC/GTT	-	-	22	6	6	1	1								1																																																																				37
AAG/CTT	-	-	65	15	5	2			1		1																																																																								89
AAT/ATT	-	-	14	8	1			1	1																																																																										25
ACC/GGT	-	-	29	10	6	1	1	1																																																																											48
ACG/CGT	-	-	9	6	2	1																																																																													18
ACT/AGT	-	-	6	3																									2																																																						11
AGC/CTG	-	-	30	21	7	2		1			1																																																																								62
AGG/CCT	-	-	32	7	3			1				1																																																																							44
ATC/ATG	-	-	28	8	3	2		1																																																																											42
CCG/CGG	-	-	17	3	1																																																																														21
AAAC/GTTT	-	5	1																																																																																6
AAAG/CTTT	-	9	2	1																																																																															12
AAAT/ATTT	-	13	7	2										1					1	1																																																															25
AACC/GGTT	-	2																																																																																	2
AACG/CGTT	-	1																																																																																	1
AAGC/CTTG	-	3																																																																																	3
AAGG/CCTT	-	15	4	1																																																																															20
AATC/ATTG	-	1																																																																																	1
AATG/ATTC	-	1	2																																																																																3
AATT/AATT	-	1																																																																																	1
ACCT/AGGT	-		1																																																																																1
ACGC/CGTG	-	1																																																																																	1
ACGG/CCGT	-	5																																																																																	5
ACTG/AGTC	-				1																																																																														1
AGCG/CGCT	-	1																																																																																	1
AGGC/CCTG	-	1																																																																																	1
AGGG/CCCT	-	1																																																																																	1
ATCC/ATGG	-	7	1		1		1																																																																												10
ATGC/ATGC	-	3																																																																																	3
CCGG/CCGG	-	1																																																																																	1
AAAAC/GTTTT	6	1																																																																																	7
AAAAG/CTTTT	11	2																																																																																	13
AAAAT/ATTTT	12	3																																																																																	15
AAACC/GGTTT	1																																																																																		1
AAACG/CGTTT	2																																																																																		2
AAAGG/CCTTT	6									1																																																																									7
AAAGT/ACTTT	1																																																																																		1
AAATC/ATTTG	1	1																																																																																	2
AAATG/ATTTC	1																																																																																		1
AAATT/AATTT	1	1																																																																																	2
AACAG/CTGTT	1																																																																																		1
AACCC/GGGTT	2																																																																																		2
AACCT/AGGTT	1	1																																																																																	2
AAGAC/CTTGT	1																																																																																		1
AAGAG/CTCTT	6																																																																																		6
AAGCC/CTTGG		1																																																																																	1
AAGGG/CCCTT	4																																																																																		4
AAGTG/ACTTC	1	1																																																																																	2
AATAC/ATTGT	3																																																																																		3
AATAG/ATTCT	2																																																																																		2
AATAT/ATATT	4	1																																																																																	5
AATCC/ATTGG	2	1																																																																																	3
AATCG/ATTCG	2																																																																																		2
AATCT/AGATT	12				1																																																																														13
AATGC/ATTGC	1																																																																																		1
AATGG/ATTCC	2																																																																																		2
AATGT/ACATT	6	1																																																																																	7
AATTC/AATTG		1																																																																																	1
ACACG/CGTGT	2																																																																																		2
ACAGT/ACTGT	1																																																																																		1
ACATC/ATGTG	1																																																																																		1
ACATG/ATGTC	2																																																																																		2
ACCAT/ATGGT	1																																																																																		1
ACCCC/GGGGT	2																																																																																		2
ACCCT/AGGGT	1	1																																																																																	2
ACCGC/CGGTG	1																																																																																		1
ACCGG/CCGGT	1																																																																																		1
ACCGT/ACGGT	2																																																																																		2
ACGAT/ATCGT	1																																																																																		1
ACGCC/CGTGG	1																																																																																		1
ACGCG/CGCGT	9																																																																																		9
ACTAT/AGTAT	1																																																																																		1
ACTCC/AGTGG	1																																																																																		1
ACTCG/AGTCG	2																																																																																		2
ACTGG/AGTCC	1																																																																																		1
AGAGC/CTCTG	1																																																																																		1
AGAGG/CCTCT	1																																																																																		1
AGATC/ATCTG		2																																																																																	2
AGATG/ATCTC	6																																																																																		6
AGCAT/ATGCT	2																																																																																		2
AGGAT/ATCCT	1																																																																																		1
AGGGC/CCCTG	2																																																																																		2
AGGGG/CCCCT	6	1																																																																																	7
ATCCC/ATGGG	1																																																																																		1
ATCCG/ATCGG	2																																																																																		2
ATCGC/ATGCG	2																																																																																		2
CCCCG/CGGGG	1																																																																																		1
AAAAAC/GTTTTT	4																																																																																		4
AAAAAG/CTTTTT	5		1																																																																																6
AAAAAT/ATTTTT	7	1																																																																																	8
AAAACC/GGTTTT	1																																																																																		1
AAAAGC/CTTTTG		1																																																																																	1
AAAAGG/CCTTTT	7																																																																																		7
AAAATC/ATTTTG	2																																																																																		2
AAAATG/ATTTTC	1																																																																																		1
AAACAC/GTGTTT		1																																																																																	1
AAACCC/GGGTTT	2	2																																																																																	4
AAACCG/CGGTTT	1																																																																																		1
AAACGC/CGTTTG	1																																																																																		1
AAAGAC/CTTTGT			1																																																																																1
AAAGAG/CTCTTT	1						1						2																																																																						4
AAAGAT/ATCTTT	1																																																																																		1
AAAGCC/CTTTGG	2																																																																																		2
AAAGGC/CCTTTG	1	1																																																																																	2
AAAGGG/CCCTTT	4																																																																																		4
AAAGGT/ACCTTT		1																																																																																	1
AAAGTC/ACTTTG		1																																																																																	1
AAATAT/ATATTT	1																																																																																		1
AAATCT/AGATTT	2																																																																																		2
AAATGC/ATTTGC			1																																																																																1
AAATGG/ATTTCC	2																																																																																		2
AAATGT/ACATTT	1																																																																																		1
AACAAG/CTTGTT	1												1	1																																																																					3
AACACC/GGTGTT	2			1																																																																															3
AACAGC/CTGTTG	8	1	1																																																																																10
AACAGG/CCTGTT	1																																																																																		1
AACATC/ATGTTG	3																																																																																		3
AACATG/ATGTTC			1																																																																																1
AACCAG/CTGGTT	3																																																																																		3
AACCCG/CGGGTT	1																																																																																		1
AACCGC/CGGTTG	1																																																																																		1
AACCTC/AGGTTG	1																																																																																		1
AACCTG/AGGTTC	2	1																																																																																	3
AACGAG/CGTTCT	1				1																																																																														2
AACGCC/CGTTGG	1																																																																																		1
AACGGC/CCGTTG	1	1																																																																																	2
AACGGT/ACCGTT	1																																																																																		1
AACTCT/AGAGTT		1																																																																																	1
AACTGC/AGTTGC	1																																																																																		1
AACTGG/AGTTCC	1																																																																																		1
AAGACC/CTTGGT	2																																																																																		2
AAGACG/CGTCTT	2					1																																																																													3
AAGAGG/CCTCTT	10	2		1	1							1																																																																							15
AAGATG/ATCTTC	7																																																																																		7
AAGCAC/CTTGTG	3																																																																																		3
AAGCAG/CTGCTT	4																																																																																		4
AAGCCC/CTTGGG		1																																																																																	1
AAGCCT/AGGCTT	1																																																																																		1
AAGCGG/CCGCTT	2																																																																																		2
AAGCTC/AGCTTG	4	2																																																																																	6
AAGCTG/AGCTTC	1																																																																																		1
AAGGAC/CCTTGT	2																																																																																		2
AAGGAG/CCTTCT	7	1																																																																																	8
AAGGAT/ATCCTT	2																																																																																		2
AAGGCC/CCTTGG	1																																																																																		1
AAGGGC/CCCTTG	3	1																																																																																	4
AAGGGG/CCCCTT	6	1																																																																																	7
AAGGTC/ACCTTG	1																																																																																		1
AAGGTG/ACCTTC	1																																																																																		1
AAGTCC/ACTTGG	1																																																																																		1
AAGTCT/ACTTAG	1	1																																																																																	2
AAGTGC/ACTTGC	1																																																																																		1
AATACT/AGTATT	1																																																																																		1
AATCAG/ATTCTG				1	1																																																																														2
AATCCC/ATTGGG	4	1																																																																																	5
AATCCG/ATTCGG			1																																																																																1
AATCCT/AGGATT	1																																																																																		1
AATCGC/ATTGCG	1																																																																																		1
AATCTG/AGATTC	1																																																																																		1
AATGAC/ATTGTC	2	1																																																																																	3
AATGAT/ATCATT	1																																																																																		1
AATGCG/ATTCGC	1																																																																																		1
AATGCT/AGCATT		1																																																																																	1
AATGGC/ATTGCC	1																																																																																		1
AATGGG/ATTCCC	2																																																																																		2
AATGTG/ACATTC	1																																																																																		1
AATTAC/AATTGT	2																																																																																		2
AATTAT/AATTAT	1																																																																																		1
ACACAG/CTGTGT	1																																																																																		1
ACACCC/GGGTGT	1																																																																																		1
ACACCG/CGGTGT			1																																																																																1
ACACGC/CGTGTG	1																																																																																		1
ACAGAG/CTCTGT	4																																																																																		4
ACAGCC/CTGTGG	2																																																																																		2
ACAGCG/CGCTGT	1																																																																																		1
ACAGGG/CCCTGT	1																																																																																		1
ACATAT/ATATGT													1																																																																						1
ACATCG/ATGTCG	1																																																																																		1
ACATCT/AGATGT	2																																																																																		2
ACCACG/CGTGGT	1																																																																																		1
ACCACT/AGTGGT	2																																																																																		2
ACCAGC/CTGGTG	3																																																																																		3
ACCAGG/CCTGGT	1																																																																																		1
ACCATC/ATGGTG	4																																																																																		4
ACCCAG/CTGGGT	1		2																																																																																3
ACCCAT/ATGGGT	2																																																																																		2
ACCCCC/GGGGGT	2																																																																																		2
ACCCGC/CGGGTG	2																																																																																		2
ACCCGT/ACGGGT		1																																																																																	1
ACCCTC/AGGGTG	1	1																																																																																	2
ACCGAG/CGGTCT	1																																																																																		1
ACCGCC/CGGTGG	3	1																																																																																	4
ACCGCG/CGCGGT	2																																																																																		2
ACCGCT/AGCGGT	1																																																																																		1
ACCGGC/CCGGTG	1																																																																																		1
ACCGGG/CCCGGT	1																																																																																		1
ACCGGT/ACCGGT	1																																																																																		1
ACCTCC/AGGTGG	8	2	1																																																																																11
ACCTGC/AGGTGC	3																																																																																		3
ACGAGC/CGTGCT	1																																																																																		1
ACGAGG/CCTCGT	6																																																																																		6
ACGATG/ATCGTC	1	1																																																																																	2
ACGCAG/CGTCTG	2																																																																																		2
ACGCCG/CGGCGT	1																																																																																		1
ACGCTC/AGCGTG	1																																																																																		1
ACGGAG/CCGTCT	1																																																																																		1
ACGGCG/CCGTCG	3																																																																																		3
ACGGGC/CCCGTG	1																																																																																		1
ACTATC/AGTGAT	1																																																																																		1
ACTCCG/AGTCGG	1																																																																																		1
ACTCCT/AGGAGT	1																																																																																		1
ACTCGC/AGTGCG	1																																																																																		1
ACTCGG/AGTCCG	2																																																																																		2
ACTCTG/AGAGTC	2																																																																																		2
ACTGAG/AGTCTC	2																																																																																		2
ACTGGG/AGTCCC	2																																																																																		2
AGAGCC/CTCTGG	2																																																																																		2
AGAGGG/CCCTCT	7	2	1																																																																																10
AGATGG/ATCTCC		1																																																																																	1
AGCAGG/CCTGCT	4																																																																																		4
AGCATC/ATGCTG	1																																																																																		1
AGCCAT/ATGGCT	1	1																																																																																	2
AGCCCC/CTGGGG	2																																																																																		2
AGCCTC/AGGCTG	3																																																																																		3
AGCCTG/AGGCTC	4	1																																																																																	5
AGCGGG/CCCGCT	2																																																																																		2
AGCTCC/AGCTGG	2					1																																																																													3
AGGATC/ATCCTG	1	1																																																																																	2
AGGATG/ATCCTC	5	3	1									1																																																																							10
AGGCCG/CCTCGG	1																																																																																		1
AGGCGC/CCTGCG	3																																																																																		3
AGGCGG/CCGCCT	2																																																																																		2
AGGGCG/CCCTCG	2																																																																																		2
AGGGGC/CCCCTG	1																																																																																		1
AGGGGG/CCCCCT	13	4																																																																																	17
ATCCCC/ATGGGG	4	2	1																																																																																7
ATCCCG/ATCGGG	1																																																																																		1
ATCCGG/ATCCGG		1																																																																																	1
ATCGCC/ATGGCG	1																																																																																		1
ATCGGC/ATGCCG	2																																																																																		2
ATGCCC/ATGGGC	1	1																																																																																	2
CCCCCG/CGGGGG	4																																																																																		4
CCCGGG/CCCGGG	1																																																																																		1
CCGGCG/CCGGCG	2																																																																																		2
