Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-2/megassr/results/hub_GCA_002222395.1/fasta/hub_GCA_002222395.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              457
Total size of examined sequences (bp):           18447467
Total number of identified SSRs:                 1357
Number of SSR containing sequences:              198
Number of sequences containing more than 1 SSR:  149
Number of SSRs present in compound formation:    93


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	74
2	220
3	400
4	99
5	169
6	395

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	3	1	1	2	3	4	3	1	1	1	1	3		3		2				1															1					33
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	2				1	1											1																							6
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1			1				1		1																	1												1		6
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4	3		1	2	4	2	3	1	2		1	3	1						1		1																			29
AC	-	-	-	3	2	1	1		1																																																	8
AG	-	-	-	14	2	2																																																				18
AT	-	-	-	22	19	11	2	5	3	3	2	1	1																																													69
CA	-	-	-	5	2	2		1																																																		10
CT	-	-	-	12	6	3				1								1		1																			1																			25
GA	-	-	-	10	3	2	1																																																			16
GC	-	-	-	2																																																						2
GT	-	-	-	4			1																																																			5
TA	-	-	-	20	11	3	4		1	1	1		1																																													42
TC	-	-	-	11	1	1		1																																																		14
TG	-	-	-	4	6							1																																														11
AAC	-	-	1		1																																																					2
AAG	-	-	12	2	1																																																					15
AAT	-	-	6	1																																																						7
ACA	-	-	5				1																																																			6
ACC	-	-	4	2																																																						6
ACG	-	-	1	1																																																						2
ACT	-	-	2										1																																												1	4
AGA	-	-	13	1	1				1																																																	16
AGC	-	-	5	5							1																																															11
AGG	-	-	4		1			1																																																		6
AGT	-	-	2																																																							2
ATA	-	-	2	3					1																		1																															7
ATC	-	-	4					1																																																		5
ATG	-	-	3	2																																																						5
ATT	-	-	1		1																																																					2
CAA	-	-	6		2																																																					8
CAC	-	-	3	2																																																						5
CAG	-	-	6	3	2			1																																																		12
CAT	-	-	5	1	1	1																																																				8
CCA	-	-	3	1	5			1																																																		10
CCG	-	-	4		1																																																					5
CCT	-	-	6	1																																																						7
CGA	-	-	2	1		1																																																				4
CGC	-	-	3																																																							3
CGG	-	-	3	2																																																						5
CGT	-	-	1	1	1																																																					3
CTA	-	-		1																																																						1
CTC	-	-	2	3	1																																																					6
CTG	-	-	3	3																																																						6
CTT	-	-	10	3	1	1																																																				15
GAA	-	-	12	6																																																						18
GAC	-	-	2		1																																																					3
GAG	-	-	6	1	1																																																					8
GAT	-	-	4	2	1	1																																																				8
GCA	-	-	2	3	1	1																																																				7
GCC	-	-	2																																																							2
GCG	-	-	3																																																							3
GCT	-	-	9	5	1	1																																																				16
GGA	-	-	3																																																							3
GGC	-	-	3	1																																																						4
GGT	-	-	7	2	1																																																					10
GTA	-	-	1																																																							1
GTC	-	-	2	1																																																						3
GTG	-	-	8	1		1	1																																																			11
GTT	-	-	1	4																																																						5
TAA	-	-	2	2																																																						4
TAC	-	-	1	1																																																						2
TAG	-	-		1																																																						1
TCA	-	-	6	3																																																						9
TCC	-	-	11	2								1																																														14
TCG	-	-	1	2																																																						3
TCT	-	-	12	2	1	1					1																																															17
TGA	-	-	6		1																																																					7
TGC	-	-	6	2	3																																																					11
TGG	-	-	4	2																																																						6
TGT	-	-	6	2	1	1																													1																							11
TTA	-	-	3	2																																																						5
TTC	-	-	6	1	1																																																					8
TTG	-	-	3	1	2																																																					6
AAAC	-	1																																																								1
AAAG	-	2																																																								2
AAAT	-	1		1																																																						2
AACA	-	2																																																								2
AACC	-	1																																																								1
AACG	-	1																																																								1
AAGA	-		1																																																							1
AATA	-	2																		1																																						3
ACGC	-	1																																																								1
AGGA	-	7		1																																																						8
AGGG	-	1																																																								1
ATAA	-	1	1											1																																												3
ATCC	-	1																																																								1
ATGA	-	1	1																																																							2
ATGC	-	1																																																								1
ATGG	-	1																																																								1
ATTT	-	1																		1	1																																					3
CAAA	-	1	1																																																							2
CAAC	-	1																																																								1
CAAG	-	1																																																								1
CATC	-		1			1	1																																																			3
CCAT	-	1																																																								1
CGGA	-	1																																																								1
CGTC	-	1																																																								1
CTCG	-	1																																																								1
CTGC	-	1																																																								1
CTTC	-	1	1																																																							2
CTTT	-	1	1																																																							2
GAAA	-	4		1																																																						5
GAAG	-	2	2																																																							4
GAAT	-		1																																																							1
GACG	-	1																																																								1
GATG	-		1																																																							1
GCAT	-	1																																																								1
GCCG	-	1																																																								1
GGAC	-	1																																																								1
GGAT	-	1																																																								1
GGTA	-		1																																																							1
GTTT	-	1																																																								1
TAAA	-	1																																																								1
TAAT	-	1																																																								1
TATT	-			1																																																						1
TCAA	-	1																																																								1
TCAG	-				1																																																					1
TCCA	-	2			1																																																					3
TCCG	-	1																																																								1
TCCT	-	3																																																								3
TGCA	-	2																																																								2
TGCT	-	1																																																								1
TGGA	-	1																																																								1
TTAT	-	1	1																	1																																						3
TTCC	-	2	1																																																							3
TTCT	-	1																																																								1
TTGC	-	1																																																								1
TTTA	-	5	1											1																																												7
AAAAG	1	1																																																								2
AAAAT	5																																																									5
AAACA	1																																																									1
AAAGA	1																																																									1
AAAGG	1																																																									1
AAATA		1																																																								1
AACCA	1																																																									1
AAGAA	3																																																									3
AAGAG	2																																																									2
AAGGG	1																																																									1
AAGTG	1	1																																																								2
AATAA	1																																																									1
AATAC	1																																																									1
AATCA	1	1																																																								2
AATCC	1																																																									1
AATCG	1																																																									1
AATGT	1																																																									1
AATTA	1																																																									1
ACAAA	1																																																									1
ACCCT	1																																																									1
ACCGG	1																																																									1
ACGCG	4																																																									4
ACGGT	1																																																									1
ACTAT	1																																																									1
AGAAA	1																																																									1
AGAGA	1																																																									1
AGATG	1																																																									1
AGATT	3				1																																																					4
AGCCA		1																																																								1
AGGGA	1																																																									1
AGGGG	1	1																																																								2
AGGTT		1																																																								1
ATAAA	1																																																									1
ATATT	1																																																									1
ATCTC	1																																																									1
ATGGA	1																																																									1
ATGTA	2																																																									2
ATTAC	1																																																									1
ATTAT	1																																																									1
ATTGA		1																																																								1
ATTGC	1																																																									1
ATTTT	1																																																									1
CAGTA	1																																																									1
CATCT	1																																																									1
CATGT	1																																																									1
CATTA	1	1																																																								2
CCATC	1																																																									1
CCCCA	1																																																									1
CCCCG	1																																																									1
CCGCA	1																																																									1
CCTAC		1																																																								1
CGACT	1																																																									1
CGATG	1																																																									1
CGATT	1																																																									1
CGCGT	2																																																									2
CTAAC	1																																																									1
CTAAT	3																																																									3
CTATG	1																																																									1
CTCTT	1																																																									1
CTGCC	1																																																									1
CTGGA	1																																																									1
CTTCC	1																																																									1
CTTCT	1																																																									1
CTTTC				1																																																						1
CTTTT	1	1																																																								2
GAAAA	1																																																									1
GAAAG	1																																																									1
GAATA	1																																																									1
GACAA	1																																																									1
GACAC	1																																																									1
GACGC	3																																																									3
GAGAA	1																																																									1
GAGAT	2																																																									2
GATGT	1																																																									1
GATTA	1																																																									1
GCATA	1																																																									1
GCATC	1																																																									1
GCCAC	1																																																									1
GGAAA	2																																																									2
GGAGA	1																																																									1
GGAGG	1																																																									1
GGAGT	1																																																									1
GGATC	1																																																									1
GGCAG	1																																																									1
GGCGG	1																																																									1
GGGAA	1																																																									1
GGGAG	1																																																									1
GGGGA	3																																																									3
GGGTG	1																																																									1
GGGTT	2																																																									2
GGTAC	1																																																									1
GGTAT	1																																																									1
GTATC	1																																																									1
GTCAT	1																																																									1
GTTTT	1																																																									1
TAAAA	1																																																									1
TAAAT		1																																																								1
TACAT	1																																																									1
TAGAA	1																																																									1
TATTT	2																																																									2
TCAGA		1																																																								1
TCCAA		1																																																								1
TCCGA	1																																																									1
TCCTA	1																																																									1
TCCTT	1																																																									1
TCGAG	1																																																									1
TCTAA	5																																																									5
TCTGC	1																																																									1
TCTTT	1																																																									1
TGAGA	1																																																									1
TGATC		1																																																								1
TGGAT	1																																																									1
TGTCG	1																																																									1
TGTTC	1																																																									1
TTATA	2	1																																																								3
TTCCA	1																																																									1
TTCCT	1																																																									1
TTGTA	2																																																									2
TTTAC	1																																																									1
TTTAT		1																																																								1
TTTCA	1																																																									1
TTTCG	2																																																									2
TTTGT	1																																																									1
TTTTA	1	1																																																								2
TTTTC	2																																																									2
TTTTG	2	1																																																								3
AAAAAC	1																																																									1
AAAAAT		1																																																								1
AAAATA	1																																																									1
AAAGAA	1																																																									1
AAAGGA	1																																																									1
AAAGGT		1																																																								1
AAATAT	1																																																									1
AACAAA	1																																																									1
AACAGC	1																																																									1
AAGAAA	1																																																									1
AAGCCC		1																																																								1
AAGGAA	1																																																									1
AAGGAG	1																																																									1
AAGGGA	2																																																									2
AAGGGG	1	1																																																								2
AAGTGC	1																																																									1
AATCCC		1																																																								1
AATTAT	1																																																									1
ACAATG	1																																																									1
ACAATT	1																																																									1
ACATGA		1																																																								1
ACCAAG	1																																																									1
ACCAGA	1																																																									1
ACCCAC	1																																																									1
ACCCAG	1																																																									1
ACCTCC	1																																																									1
ACCTGC	1																																																									1
ACGACC	1																																																									1
ACGGCA		1																																																								1
AGAAGC	1																																																									1
AGAAGG	1																																																									1
AGAGAA							1																																																			1
AGAGAC	1																																																									1
AGAGTT		1																																																								1
AGATGT	1																																																									1
AGCAAA		1																																																								1
AGCAGA	1																																																									1
AGCAGG	1																																																									1
AGCCAA	2																																																									2
AGCGGT	1																																																									1
AGCTTC	1																																																									1
AGCTTG	1																																																									1
AGGGGG	1																																																									1
AGGTGG	1																																																									1
AGTATT	1																																																									1
ATAATG	1																																																									1
ATACAT	1																																																									1
ATCACC	1																																																									1
ATCCCA	1																																																									1
ATCCTC		1																																																								1
ATGAAG	2																																																									2
ATGGCA	1																																																									1
ATGGTG	1																																																									1
ATGTAG	1																																																									1
ATTCCC	1																																																									1
ATTTGC			1																																																							1
ATTTTT	1																																																									1
CAAAAA	3																																																									3
CAAACA		1																																																								1
CAACAG	1																																																									1
CAAGCA	2																																																									2
CAAGCT	1	2																																																								3
CAAGGC	1																																																									1
CAATCG	1																																																									1
CACCAT	1																																																									1
CACCTC	1	2																																																								3
CACTAT	1																																																									1
CAGAAC	1																																																									1
CAGAAG	1																																																									1
CAGACA	1																																																									1
CAGCAA	3		1																																																							4
CAGCTC	2																																																									2
CAGTCT	1																																																									1
CATCAC	1																																																									1
CATCGG	1																																																									1
CATGGG		1																																																								1
CCAAAC	1																																																									1
CCAACA	1			1																																																						2
CCAAGT	1																																																									1
CCACAG	1																																																									1
CCACCG	1																																																									1
CCAGCC	1																																																									1
CCATAG	1																																																									1
CCATCC	1	1																																																								2
CCATTC	1																																																									1
CCATTT	1																																																									1
CCCAAA		1																																																								1
CCCAGA			1																																																							1
CCCAGC	1																																																									1
CCCAGT	1																																																									1
CCCATA	1																																																									1
CCCATC	1	1																																																								2
CCCCCA	1																																																									1
CCCCGC	1																																																									1
CCCCTT	1																																																									1
CCCGCC	1																																																									1
CCCTTT	1																																																									1
CCGATC	1																																																									1
CCGCCA	1																																																									1
CCGGCA	1																																																									1
CCGTCG	1																																																									1
CCTCAA	1																																																									1
CCTCAC	1																																																									1
CCTCAT	1																																																									1
CCTCCA	2		1																																																							3
CCTCTC	3	1																																																								4
CCTGAG	1																																																									1
CCTGCA	1																																																									1
CCTGTT	1																																																									1
CCTTTT	1																																																									1
CGAACC	1																																																									1
CGACAC			1																																																							1
CGAGGA	2																																																									2
CGAGTC	1																																																									1
CGATGC	1																																																									1
CGCCGG	1																																																									1
CGCCGT	1																																																									1
CGCCTG	1																																																									1
CGCGAC	1																																																									1
CGGAGA	1																																																									1
CGGGGG	1																																																									1
CGGTCC	1																																																									1
CGTCCT	1																																																									1
CGTCTG	2																																																									2
CGTCTT	1																																																									1
CTAAGT		1																																																								1
CTACCA	1																																																									1
CTATGG		1																																																								1
CTCAAG	1																																																									1
CTCAGC	1																																																									1
CTCATC	2						1																																																			3
CTCCCC	3	3																																																								6
CTCGCC	1																																																									1
CTCTGG	1																																																									1
CTCTTC					1																																																					1
CTGACT	1																																																									1
CTGATC		1																																																								1
CTGCAC	1																																																									1
CTGGTC	1																																																									1
CTGTCC	1																																																									1
CTGTTG	2																																																									2
CTTATC	1																																																									1
CTTCCC	2																																																									2
CTTCGT						1																																																				1
CTTGCC	1																																																									1
CTTGGT	1																																																									1
CTTTGC		1																																																								1
CTTTTC	1																																																									1
CTTTTT	1																																																									1
GAAAAA			1																																																							1
GAACCT	1																																																									1
GAACGA			1																																																							1
GAAGAG	2	1																																																								3
GAAGAT	1																																																									1
GAAGGA	1																																																									1
GAATCC			1																																																							1
GACGAG	1																																																									1
GACGAT	1																																																									1
GAGAAC	1																																																									1
GAGATG		1																																																								1
GAGCAG	2																																																									2
GAGCGT	1																																																									1
GAGGAA	5						1																																																			6
GAGGCT	1																																																									1
GAGGGT		1																																																								1
GATAAA	1																																																									1
GATCCG		1																																																								1
GATCCT	1																																																									1
GATGAA	1																																																									1
GATGTC	1																																																									1
GATTCT			1	2																																																						3
GATTTT	1																																																									1
GCAACA	1																																																									1
GCAACC	1																																																									1
GCACAA	1																																																									1
GCACAC	1																																																									1
GCACCA	1																																																									1
GCACCC	1																																																									1
GCAGAA	1																																																									1
GCAGGC	1																																																									1
GCCACA	1																																																									1
GCCCCC	1																																																									1
GCCGAC	1																																																									1
GCCTGA	1																																																									1
GCGTTT	1																																																									1
GCTGAG	1																																																									1
GCTGAT	1																																																									1
GCTGGT	1																																																									1
GCTTCC	1																																																									1
GCTTGA	1																																																									1
GGAAAA	1																																																									1
GGAAGG	1																																																									1
GGACGA	2																																																									2
GGAGAA		1																																																								1
GGAGAG	1																																																									1
GGAGCA	1																																																									1
GGAGCT						1																																																				1
GGAGGC	1																																																									1
GGAGGG	1	1																																																								2
GGAGGT	1																																																									1
GGCCCG	1																																																									1
GGCCTC	1																																																									1
GGCGAC	1																																																									1
GGCGAT	1																																																									1
GGCGCA	1																																																									1
GGCGCC	1																																																									1
GGCGGA	1																																																									1
GGCGGG	1																																																									1
GGCGGT		1																																																								1
GGCTCA	1	1																																																								2
GGGAAG	2																																																									2
GGGACT	1																																																									1
GGGAGA		1																																																								1
GGGAGG	1	1																																																								2
GGGATG	1		1																																																							2
GGGCAA	1	1																																																								2
GGGCAT	1																																																									1
GGGCGA	1																																																									1
GGGGAT	1																																																									1
GGGGGA	6	1																																																								7
GGGGGC		1																																																								1
GGGGGT	1																																																									1
GGGTGC	1																																																									1
GGTAGT	1																																																									1
GGTCGC	1																																																									1
GGTGGA	1																																																									1
GGTGGC	1																																																									1
GGTTCA	1																																																									1
GGTTCT	1																																																									1
GGTTTC	1																																																									1
GTACCC		1																																																								1
GTCCGA	1																																																									1
GTCGGA	1																																																									1
GTCTCG	1																																																									1
GTCTCT	2																																																									2
GTGCCC	1																																																									1
GTTCCA	1																																																									1
GTTCTT	1																																																									1
GTTGCC	1																																																									1
TAAGTC	1																																																									1
TACATA								1																																																		1
TACATT	1																																																									1
TACCCA	1																																																									1
TACCGG	1																																																									1
TACCGT	1																																																									1
TAGCAT		1																																																								1
TAGGAG	1																																																									1
TAGGAT	1																																																									1
TATTTT	2																																																									2
TCAACA	2																																																									2
TCACCT	1																																																									1
TCAGAG	1																																																									1
TCAGAT	1																																																									1
TCATCC	2																																																									2
TCATCT	1																																																									1
TCATTG		1																																																								1
TCATTT	1																																																									1
TCCACC	1																																																									1
TCCATT	1																																																									1
TCCCAA	1																																																									1
TCCCCC	1																																																									1
TCCCGC	1																																																									1
TCCCTC			1																																																							1
TCCGCT	1																																																									1
TCCTCA		2	1																																																							3
TCCTCT	1																																																									1
TCCTTA	1																																																									1
TCCTTC	2																																																									2
TCCTTG	1																																																									1
TCCTTT	1																																																									1
TCGCAT	1																																																									1
TCGCTG	1																																																									1
TCTAAA	2																																																									2
TCTCAG	1																																																									1
TCTCCC	3																																																									3
TCTCTG	1																																																									1
TCTCTT	1																																																									1
TCTGGG			1																																																							1
TCTTCA	1																																																									1
TCTTCC	2	2																																																								4
TCTTCG	1																																																									1
TCTTTT	1																																																									1
TGACCT	1																																																									1
TGACGA		1																																																								1
TGAGCC	1																																																									1
TGATTT	1																																																									1
TGCAAC	1																																																									1
TGCCCC	1																																																									1
TGCCTT	1																																																									1
TGCGAG	1																																																									1
TGCTCG	1																																																									1
TGGCTC	1																																																									1
TGGGAT	2																																																									2
TGGGTT		1																																																								1
TGGTGC	1																																																									1
TGGTGT	1																																																									1
TGTCAT	1																																																									1
TGTCCT	1																																																									1
TGTTGA	1																																																									1
TGTTGC		1																																																								1
TGTTTT	1																																																									1
TTACAA	1																																																									1
TTAGGC	1																																																									1
TTCACA	1																																																									1
TTCAGG		1																																																								1
TTCATC	1																																																									1
TTCCCC	1																																																									1
TTCCTT	1																																																									1
TTCTCC	2																																																									2
TTCTCT																						1																																				1
TTCTTG																										1																																1
TTGCCC	1																																																									1
TTGGCG	1																																																									1
TTTATT	1																																																									1
TTTCCC	1																																																									1
TTTGAC		1																																																								1
TTTGGG	1																																																									1
TTTGGT	1																																																									1
TTTGTC			1																																																							1
TTTTTA	2																																																									2
TTTTTC	1																																																									1
TTTTTG	1																																																									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	6	6	1	2	4	7	6	6	2	3	1	2	6	1	3		2			1	1	1														1					62
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	2		1		1	1	1		1								1									1												1		12
AC/GT	-	-	-	16	10	3	2	1	1			1																																														34
AG/CT	-	-	-	47	12	8	1	1		1								1		1																			1																			73
AT/AT	-	-	-	42	30	14	6	5	4	4	3	1	2																																													111
CG/CG	-	-	-	2																																																						2
AAC/GTT	-	-	22	7	6	1	1																												1																							38
AAG/CTT	-	-	65	15	5	2			1		1																																															89
AAT/ATT	-	-	14	8	1				1																		1																															25
ACC/GGT	-	-	29	10	6	1	1	1																																																		48
ACG/CGT	-	-	9	6	2	1																																																				18
ACT/AGT	-	-	6	3									1																																												1	11
AGC/CTG	-	-	31	21	7	2		1			1																																															63
AGG/CCT	-	-	32	7	3			1				1																																														44
ATC/ATG	-	-	28	8	3	2		1																																																		42
CCG/CGG	-	-	18	3	1																																																					22
AAAC/GTTT	-	5	1																																																							6
AAAG/CTTT	-	8	2	1																																																						11
AAAT/ATTT	-	12	3	2										2						3	1																																					23
AACC/GGTT	-	2																																																								2
AACG/CGTT	-	1																																																								1
AAGC/CTTG	-	3																																																								3
AAGG/CCTT	-	15	4	1																																																						20
AATC/ATTG	-	1																																																								1
AATG/ATTC	-	1	2																																																							3
AATT/AATT	-	1																																																								1
ACCT/AGGT	-		1																																																							1
ACGC/CGTG	-	1																																																								1
ACGG/CCGT	-	5																																																								5
ACTG/AGTC	-				1																																																					1
AGCG/CGCT	-	1																																																								1
AGGC/CCTG	-	1																																																								1
AGGG/CCCT	-	1																																																								1
ATCC/ATGG	-	7	2		1	1	1																																																			12
ATGC/ATGC	-	4																																																								4
CCGG/CCGG	-	1																																																								1
AAAAC/GTTTT	6	1																																																								7
AAAAG/CTTTT	11	2																																																								13
AAAAT/ATTTT	12	3																																																								15
AAACC/GGTTT	1																																																									1
AAACG/CGTTT	2																																																									2
AAAGG/CCTTT	6			1																																																						7
AAAGT/ACTTT	1																																																									1
AAATC/ATTTG	1	1																																																								2
AAATG/ATTTC	1																																																									1
AAATT/AATTT	1	1																																																								2
AACAG/CTGTT	1																																																									1
AACCC/GGGTT	2																																																									2
AACCT/AGGTT	1	1																																																								2
AAGAC/CTTGT	1																																																									1
AAGAG/CTCTT	6																																																									6
AAGCC/CTTGG		1																																																								1
AAGGG/CCCTT	4																																																									4
AAGTG/ACTTC	1	1																																																								2
AATAC/ATTGT	3																																																									3
AATAG/ATTCT	2																																																									2
AATAT/ATATT	4	1																																																								5
AATCC/ATTGG	2	1																																																								3
AATCG/ATTCG	2																																																									2
AATCT/AGATT	12				1																																																					13
AATGC/ATTGC	1																																																									1
AATGG/ATTCC	2																																																									2
AATGT/ACATT	6	1																																																								7
AATTC/AATTG		1																																																								1
ACACG/CGTGT	2																																																									2
ACAGT/ACTGT	1																																																									1
ACATC/ATGTG	1																																																									1
ACATG/ATGTC	2																																																									2
ACCAT/ATGGT	1																																																									1
ACCCC/GGGGT	2																																																									2
ACCCT/AGGGT	1	1																																																								2
ACCGC/CGGTG	1																																																									1
ACCGG/CCGGT	1																																																									1
ACCGT/ACGGT	2																																																									2
ACGAT/ATCGT	1																																																									1
ACGCC/CGTGG	1																																																									1
ACGCG/CGCGT	9																																																									9
ACTAT/AGTAT	1																																																									1
ACTCC/AGTGG	1																																																									1
ACTCG/AGTCG	2																																																									2
ACTGG/AGTCC	1																																																									1
AGAGC/CTCTG	1																																																									1
AGAGG/CCTCT	1																																																									1
AGATC/ATCTG		2																																																								2
AGATG/ATCTC	6																																																									6
AGCAT/ATGCT	2																																																									2
AGGAT/ATCCT	1																																																									1
AGGGC/CCCTG	2																																																									2
AGGGG/CCCCT	6	1																																																								7
ATCCC/ATGGG	1																																																									1
ATCCG/ATCGG	2																																																									2
ATCGC/ATGCG	2																																																									2
CCCCG/CGGGG	2																																																									2
AAAAAC/GTTTTT	7																																																									7
AAAAAG/CTTTTT	5		1																																																							6
AAAAAT/ATTTTT	7	1																																																								8
AAAACC/GGTTTT	1																																																									1
AAAAGC/CTTTTG		1																																																								1
AAAAGG/CCTTTT	7																																																									7
AAAATC/ATTTTG	2																																																									2
AAAATG/ATTTTC	1																																																									1
AAACAC/GTGTTT		1																																																								1
AAACCC/GGGTTT	2	2																																																								4
AAACCG/CGGTTT	1																																																									1
AAACGC/CGTTTG	1																																																									1
AAAGAC/CTTTGT			1																																																							1
AAAGAG/CTCTTT	1						1															1																																				3
AAAGAT/ATCTTT	1																																																									1
AAAGCC/CTTTGG	2																																																									2
AAAGGC/CCTTTG	1	1																																																								2
AAAGGG/CCCTTT	4																																																									4
AAAGGT/ACCTTT		1																																																								1
AAAGTC/ACTTTG		1																																																								1
AAATAT/ATATTT	1																																																									1
AAATCT/AGATTT	2																																																									2
AAATGC/ATTTGC			1																																																							1
AAATGG/ATTTCC	2																																																									2
AAATGT/ACATTT	1																																																									1
AACAAG/CTTGTT	1																									1																																2
AACACC/GGTGTT	2			1																																																						3
AACAGC/CTGTTG	8	1	1																																																							10
AACAGG/CCTGTT	1																																																									1
AACATC/ATGTTG	3																																																									3
AACATG/ATGTTC		1																																																								1
AACCAG/CTGGTT	3																																																									3
AACCCG/CGGGTT	1																																																									1
AACCGC/CGGTTG	1																																																									1
AACCTC/AGGTTG	1																																																									1
AACCTG/AGGTTC	2	1																																																								3
AACGAG/CGTTCT	1		1																																																							2
AACGCC/CGTTGG	1																																																									1
AACGGC/CCGTTG	1	1																																																								2
AACGGT/ACCGTT	1																																																									1
AACTCT/AGAGTT		1																																																								1
AACTGC/AGTTGC	1																																																									1
AACTGG/AGTTCC	1																																																									1
AAGACC/CTTGGT	2																																																									2
AAGACG/CGTCTT	2					1																																																				3
AAGAGG/CCTCTT	10	3			1		1																																																			15
AAGATG/ATCTTC	7																																																									7
AAGCAC/CTTGTG	3																																																									3
AAGCAG/CTGCTT	4																																																									4
AAGCCC/CTTGGG		1																																																								1
AAGCCT/AGGCTT	1																																																									1
AAGCGG/CCGCTT	2																																																									2
AAGCTC/AGCTTG	4	2																																																								6
AAGCTG/AGCTTC	1																																																									1
AAGGAC/CCTTGT	2																																																									2
AAGGAG/CCTTCT	7	1																																																								8
AAGGAT/ATCCTT	2																																																									2
AAGGCC/CCTTGG	1																																																									1
AAGGGC/CCCTTG	3	1																																																								4
AAGGGG/CCCCTT	8	1																																																								9
AAGGTC/ACCTTG	1																																																									1
AAGGTG/ACCTTC	1																																																									1
AAGTCC/ACTTGG	1																																																									1
AAGTCT/ACTTAG	1	1																																																								2
AAGTGC/ACTTGC	1																																																									1
AATACT/AGTATT	1																																																									1
AATCAG/ATTCTG			1	2																																																						3
AATCCC/ATTGGG	4	1																																																								5
AATCCG/ATTCGG			1																																																							1
AATCCT/AGGATT	1																																																									1
AATCGC/ATTGCG	1																																																									1
AATCTG/AGATTC	1																																																									1
AATGAC/ATTGTC	2	1																																																								3
AATGAT/ATCATT	1																																																									1
AATGCG/ATTCGC	1																																																									1
AATGCT/AGCATT		1																																																								1
AATGGC/ATTGCC	1																																																									1
AATGGG/ATTCCC	2																																																									2
AATGTG/ACATTC	1																																																									1
AATTAC/AATTGT	2																																																									2
AATTAT/AATTAT	1																																																									1
ACACAG/CTGTGT	1																																																									1
ACACCC/GGGTGT	1																																																									1
ACACCG/CGGTGT			1																																																							1
ACACGC/CGTGTG	1																																																									1
ACAGAG/CTCTGT	4																																																									4
ACAGCC/CTGTGG	2																																																									2
ACAGCG/CGCTGT	1																																																									1
ACAGGG/CCCTGT	1																																																									1
ACATAT/ATATGT	1							1																																																		2
ACATCG/ATGTCG	1																																																									1
ACATCT/AGATGT	2																																																									2
ACCACG/CGTGGT	1																																																									1
ACCACT/AGTGGT	2																																																									2
ACCAGC/CTGGTG	3																																																									3
ACCAGG/CCTGGT	1																																																									1
ACCATC/ATGGTG	4																																																									4
ACCCAG/CTGGGT	1		2																																																							3
ACCCAT/ATGGGT	2																																																									2
ACCCCC/GGGGGT	2																																																									2
ACCCGC/CGGGTG	2																																																									2
ACCCGT/ACGGGT		1																																																								1
ACCCTC/AGGGTG	1	1																																																								2
ACCGAG/CGGTCT	1																																																									1
ACCGCC/CGGTGG	3	1																																																								4
ACCGCG/CGCGGT	2																																																									2
ACCGCT/AGCGGT	1																																																									1
ACCGGC/CCGGTG	1																																																									1
ACCGGG/CCCGGT	1																																																									1
ACCGGT/ACCGGT	1																																																									1
ACCTCC/AGGTGG	8	2	1																																																							11
ACCTGC/AGGTGC	3																																																									3
ACGAGC/CGTGCT	1																																																									1
ACGAGG/CCTCGT	6																																																									6
ACGATG/ATCGTC	1	1																																																								2
ACGCAG/CGTCTG	2																																																									2
ACGCCG/CGGCGT	1																																																									1
ACGCTC/AGCGTG	1																																																									1
ACGGAG/CCGTCT	1																																																									1
ACGGCG/CCGTCG	3																																																									3
ACGGGC/CCCGTG	1																																																									1
ACTATC/AGTGAT	1																																																									1
ACTCCG/AGTCGG	1																																																									1
ACTCCT/AGGAGT	1																																																									1
ACTCGC/AGTGCG	1																																																									1
ACTCGG/AGTCCG	2																																																									2
ACTCTG/AGAGTC	2																																																									2
ACTGAG/AGTCTC	2																																																									2
ACTGGG/AGTCCC	2																																																									2
AGAGCC/CTCTGG	2																																																									2
AGAGGG/CCCTCT	7	2	1																																																							10
AGATGG/ATCTCC		1																																																								1
AGCAGG/CCTGCT	4																																																									4
AGCATC/ATGCTG	1																																																									1
AGCCAT/ATGGCT	1	1																																																								2
AGCCCC/CTGGGG	2																																																									2
AGCCTC/AGGCTG	3																																																									3
AGCCTG/AGGCTC	4	1																																																								5
AGCGGG/CCCGCT	1																																																									1
AGCTCC/AGCTGG	2					1																																																				3
AGGATC/ATCCTG	1	1																																																								2
AGGATG/ATCCTC	5	3	1				1																																																			10
AGGCCG/CCTCGG	1																																																									1
AGGCGC/CCTGCG	3																																																									3
AGGCGG/CCGCCT	2																																																									2
AGGGCG/CCCTCG	2																																																									2
AGGGGC/CCCCTG	1																																																									1
AGGGGG/CCCCCT	13	6																																																								19
ATCCCC/ATGGGG	4	2	1																																																							7
ATCCCG/ATCGGG	1																																																									1
ATCCGG/ATCCGG		1																																																								1
ATCGCC/ATGGCG	1																																																									1
ATCGGC/ATGCCG	2																																																									2
ATGCCC/ATGGGC	1	1																																																								2
CCCCCG/CGGGGG	5	1																																																								6
CCCGGG/CCCGGG	1																																																									1
CCGGCG/CCGGCG	2																																																									2
