Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-1/megassr/results/hub_GCA_002222255.1/fasta/hub_GCA_002222255.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              537
Total size of examined sequences (bp):           18639132
Total number of identified SSRs:                 1397
Number of SSR containing sequences:              219
Number of sequences containing more than 1 SSR:  156
Number of SSRs present in compound formation:    108


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	77
2	244
3	399
4	109
5	166
6	402

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4	4	2		1	2		2	6	3	1	3	3		1	1	2								1																							36
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		2					2																																									4
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		3	2		1			1																																								7
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	4	2	3	2	3	3	3	1	2	1		3				1																															30
AC	-	-	-	2	3		2		1																																																								8
AG	-	-	-	12	2	2																																																											16
AT	-	-	-	26	15	11	8	2	3	4	2																																																						71
CA	-	-	-	6	3	1		1																																																									11
CT	-	-	-	20	7	1	1	1		1												1																																											32
GA	-	-	-	9	4	2	2																																																										17
GC	-	-	-	2																																																													2
GT	-	-	-	3	1		1																																																										5
TA	-	-	-	19	10	11	10	2	1			2																																																					55
TC	-	-	-	12		1		1		1																																																							15
TG	-	-	-	5	4	2					1																																																						12
AAC	-	-		1	1																																																												2
AAG	-	-	12	2	1	1																																																											16
AAT	-	-	6	1																																																													7
ACA	-	-	4	1			1																																																										6
ACC	-	-	4		1													1																																															6
ACG	-	-	1	1																																																													2
ACT	-	-	2																			1													1																														4
AGA	-	-	13	2																																																													15
AGC	-	-	5	5	1																																																												11
AGG	-	-	5		2																																																												7
AGT	-	-	2																																																														2
ATA	-	-	3	3	1																																																												7
ATC	-	-	5					1																																																									6
ATG	-	-	4	1																																																													5
ATT	-	-			1																																																												1
CAA	-	-	5		2																																																												7
CAC	-	-	1	1			1	1																																																									4
CAG	-	-	8	2		1	2	1																																																									14
CAT	-	-	5	2		1																																																											8
CCA	-	-	1	2	3				1																																																								7
CCG	-	-	4		1																																																												5
CCT	-	-	4	1																																																													5
CGA	-	-	2	1	1																																																												4
CGC	-	-	3		1																																																												4
CGG	-	-	5	1																																																													6
CGT	-	-	2	1			1																																																										4
CTA	-	-		1																																																													1
CTC	-	-	3	1	2																																																												6
CTG	-	-	3	3			1																																																										7
CTT	-	-	9	3	1		1																																																										14
GAA	-	-	10	6		1																																																											17
GAC	-	-	2																																																														2
GAG	-	-	6	1	1																																																												8
GAT	-	-	4	3	2																																																												9
GCA	-	-	4	3	1	1																																																											9
GCC	-	-	2																																																														2
GCG	-	-	1																																																														1
GCT	-	-	9	6	1	1																																																											17
GGA	-	-	4																																																														4
GGC	-	-	2	1																																																													3
GGT	-	-	7	2		1																																																											10
GTA	-	-	1																																																														1
GTC	-	-	2																																																														2
GTG	-	-	8		1	1						1																																																					11
GTT	-	-	1	2																																																													3
TAA	-	-	4	1									1																																																				6
TAC	-	-	1	1																																																													2
TAG	-	-		1																																																													1
TCA	-	-	5	2																																																													7
TCC	-	-	10	4																																																													14
TCG	-	-	2	2																																																													4
TCT	-	-	12	2	1	1					1																																																						17
TGA	-	-	6		1																																																												7
TGC	-	-	5	1	1							1																																																					8
TGG	-	-	6	2	1																																																												9
TGT	-	-	7	1		1	1	1																																																									11
TTA	-	-	3	2																																																													5
TTC	-	-	6	1	1																																																												8
TTG	-	-	4	1	2		1																																																										8
AAAC	-	1																																																															1
AAAG	-	2																																																															2
AAAT	-	2																																																															2
AACA	-	1																																																															1
AACC	-	1																																																															1
AACG	-	1																																																															1
AAGA	-		1																																																														1
AATA	-	3																																																															3
ACGC	-	1																																																															1
ACTA	-		1																																																														1
AGGA	-	6	1																																																														7
AGGG	-	1																																																															1
ATAA	-	1	1											1																																																			3
ATAC	-	1																																																															1
ATCC	-	1			2																																																												3
ATGA	-	1		1																																																													2
ATGC	-	1																																																															1
ATGG	-	1																																																															1
ATTT	-	1																																																		1												1	3
CAAA	-	1	1																																																														2
CAAC	-	1																																																															1
CAAG	-	1																																																															1
CATC	-	2																																																															2
CATG	-	1																																																															1
CATT	-							1																																																									1
CCAT	-	1																																																															1
CGGA	-	1																																																															1
CGTC	-	1																																																															1
CTCG	-	1																																																															1
CTGC	-	1																																																															1
CTTC	-	2																																																															2
CTTT	-	1	1																																																														2
GAAA	-	2					1																																																										3
GAAG	-	2	2																																																														4
GAAT	-		1																																																														1
GACG	-	1																																																															1
GATG	-	5	5																																																														10
GCAT	-	1																																																															1
GCCG	-	1																																																															1
GGAC	-	1																																																															1
GGAT	-	1																																																															1
GGTA	-	1																																																															1
TAAA	-	1																			1																																												2
TATT	-			1																																																													1
TCAA	-	1																																																															1
TCAG	-			1																																																													1
TCCA	-	2	1		1																																																												4
TCCG	-	1																																																															1
TCCT	-	3																																																															3
TCTA	-	1																																																															1
TGCA	-	1																																																															1
TGCT	-	1																																																															1
TGGA	-	1																																																															1
TGTT	-	1																																																															1
TTAA	-	1																																																															1
TTAT	-	1	1																																																		1												3
TTCC	-	2	1																																																														3
TTCT	-	1																																																															1
TTGC	-	1																																																															1
TTTA	-	3	2																																																														5
AAAAG		1																																																															1
AAAAT	5																																																																5
AAACA	1																																																																1
AAATA	1																																																																1
AACCA	1																																																																1
AAGAA	3																																																																3
AAGAG	2																																																																2
AAGGG	1																																																																1
AAGTG	1	1																																																															2
AATAA	1																																																																1
AATAC	1																																																																1
AATCA	1	1																																																															2
AATCC	1																																																																1
AATCG	1																																																																1
AATCT	1																																																																1
AATGT	1																																																																1
AATTA	1																																																																1
ACAAA	1																																																																1
ACATT		1																																																															1
ACCCT	1																																																																1
ACGCG	4																																																																4
ACGGT	1																																																																1
ACTAT	1																																																																1
AGAAA	1																																																																1
AGAGA	1																																																																1
AGATG	1																																																																1
AGATT	3																																																																3
AGCCA			1																																																														1
AGGGA	1																																																																1
AGGGG	1	1																																																															2
AGGTT		1																																																															1
ATAAA	1																																																																1
ATATT	1																																																																1
ATCTC	1																																																																1
ATGGA	1																																																																1
ATGTA	2																																																																2
ATTAC	1																																																																1
ATTAT	1																																																																1
ATTGA		1																																																															1
ATTGC	1																																																																1
ATTTT	1																																																																1
CAGTA	1																																																																1
CATCT	1																																																																1
CATGT	1																																																																1
CATTA	1	1																																																															2
CCATC	2																																																																2
CCCCA	1																																																																1
CCGCA	1																																																																1
CCTAC		1																																																															1
CGACT	1																																																																1
CGATG	1																																																																1
CGATT	1																																																																1
CGCGT	2																																																																2
CTAAC	1																																																																1
CTAAT	3																																																																3
CTATG	1																																																																1
CTCTT	1																																																																1
CTGCC	1																																																																1
CTGGA	1																																																																1
CTTCC	1																																																																1
CTTCT	1																																																																1
CTTTC	1																																																																1
CTTTT	1	1																																																															2
GAAAA	1																																																																1
GAAAG	1																																																																1
GAATA	1																																																																1
GACAA	2																																																																2
GACAC	1																																																																1
GACGC	3																																																																3
GAGAA	1																																																																1
GAGAT	2																																																																2
GATGT	1																																																																1
GATTA	1																																																																1
GCATA	1																																																																1
GCATC	1																																																																1
GCCAC	1																																																																1
GGAAA	2																																																																2
GGAGA	1																																																																1
GGAGG	1																																																																1
GGATC	1																																																																1
GGCAG	1																																																																1
GGGAA	1																																																																1
GGGAG	1																																																																1
GGGGA	4																																																																4
GGGTG	1																																																																1
GGGTT	2																																																																2
GGTAC	1																																																																1
GGTAT	1																																																																1
GTATC	1																																																																1
GTCAT	1																																																																1
GTTTT	1																																																																1
TAAAA	1																																																																1
TAAAT		1																																																															1
TACAT	1																																																																1
TAGAA	1																																																																1
TATTT	2																																																																2
TCAGA		1																																																															1
TCCAA		1																																																															1
TCCGA	1																																																																1
TCCTA	1																																																																1
TCCTT	1																																																																1
TCGAG	1																																																																1
TCTAA	5																																																																5
TCTGC	1																																																																1
TCTTT	1																																																																1
TGAGA	2																																																																2
TGATC		1																																																															1
TGGAT	1																																																																1
TGTCG	1																																																																1
TTATA	1	1																																																															2
TTATT	1																																																																1
TTCCA	1																																																																1
TTCCT	1																																																																1
TTGTA	2																																																																2
TTTAC	1																																																																1
TTTAT		1																																																															1
TTTCA	1																																																																1
TTTCG	2																																																																2
TTTGT	1																																																																1
TTTTA	2																																																																2
TTTTC	2																																																																2
TTTTG	2				1																																																												3
AAAAAC	2																																																																2
AAAAAT		1																																																															1
AAAATA	1																																																																1
AAAGAA	1																																																																1
AAAGGA	1																																																																1
AAAGGT		1																																																															1
AAATAT	1																																																																1
AACAAA	1																																																																1
AACAGC	1																																																																1
AAGAAA	1																																																																1
AAGCCC		1																																																															1
AAGGAA	2																																																																2
AAGGAG	1																																																																1
AAGGGA	2																																																																2
AAGGGG		1																																																															1
AAGTGC	1																																																																1
AATCCC							1																																																										1
ACAATG	1																																																																1
ACAATT	1																																																																1
ACACCC	1																																																																1
ACACCG	1																																																																1
ACATGA	1																																																																1
ACCAAG	1																																																																1
ACCCAC	1																																																																1
ACCCAG	1																																																																1
ACCTCC	1																																																																1
ACCTGC	1																																																																1
ACGGCA	1																																																																1
AGAAGC	1																																																																1
AGAAGG	1																																																																1
AGAATT		1																																																															1
AGAGAA			2																																																														2
AGAGAC	1																																																																1
AGATGT	1																																																																1
AGCAAA		1																																																															1
AGCAGA	1																																																																1
AGCAGG	1																																																																1
AGCCAA	2																																																																2
AGCGGT	1																																																																1
AGCTTC		1																																																															1
AGCTTG	1																																																																1
AGGGAA		1																																																															1
AGGTGG	1																																																																1
AGTATT	1																																																																1
ATAATG	1																																																																1
ATACAT																														1																																			1
ATCACC	1																																																																1
ATCCCA	1																																																																1
ATCCTC		1																																																															1
ATGAAG	2																																																																2
ATGGAT	1																																																																1
ATGGCA	1																																																																1
ATGGTG	1																																																																1
ATGTAG	1																																																																1
ATTCCC	1																																																																1
ATTTGC		1																																																															1
ATTTTT	1																																																																1
CAAAAA	10																																																																10
CAAACA			1																																																														1
CAACAG	1	1																																																															2
CAAGCA	2																																																																2
CAAGCT	2	1																																																															3
CAAGGC	1																																																																1
CAATCG	1																																																																1
CACCAT	1																																																																1
CACCTC	2	1																																																															3
CACTAT	1																																																																1
CAGAAC	1																																																																1
CAGAAG	1																																																																1
CAGACA	1																																																																1
CAGCAA	1	2																																																															3
CAGCTC	1	1																																																															2
CAGTCT	1																																																																1
CATATA	1																																																																1
CATCAC	1																																																																1
CATCGG	1																																																																1
CATGGG			1																																																														1
CCAAAC	1																																																																1
CCAACA					1																																																												1
CCAAGT	1																																																																1
CCACAG	2																																																																2
CCACCG	1																																																																1
CCAGCC	1																																																																1
CCATAG	1																																																																1
CCATCC	1	1																																																															2
CCATCG	1																																																																1
CCATTC	1																																																																1
CCATTT	1																																																																1
CCCAAA	1																																																																1
CCCAGA	1																																																																1
CCCAGC	1																																																																1
CCCAGT		1																																																															1
CCCATA	1																																																																1
CCCATC	1	1																																																															2
CCCCCT	1																																																																1
CCCCGC	1																																																																1
CCCGCC	1																																																																1
CCCTAA	1																																																																1
CCCTGC	1																																																																1
CCCTTC	1																																																																1
CCCTTT	1																																																																1
CCGATC	1																																																																1
CCGCAC			1																																																														1
CCGCCA	1																																																																1
CCGCTC	1																																																																1
CCGGCA	1																																																																1
CCGTCG	1																																																																1
CCTCAA	1																																																																1
CCTCAC	1																																																																1
CCTCAT	1																																																																1
CCTCCA	2																																																																2
CCTCTC	4																																																																4
CCTGAG	1																																																																1
CCTGCA	1																																																																1
CCTGCC		1																																																															1
CCTGCT	1																																																																1
CCTGTT	1																																																																1
CCTTTT	1																																																																1
CGAACC	1																																																																1
CGAGGA	2																																																																2
CGAGTC	1																																																																1
CGATGC	1																																																																1
CGATTC	1																																																																1
CGCCAA	1																																																																1
CGCCGT	1																																																																1
CGCGAC	1																																																																1
CGGAGA	1																																																																1
CGGGGG	1																																																																1
CGGTCC	1	1																																																															2
CGTCCT	1																																																																1
CGTCTG	2																																																																2
CGTCTT	1																																																																1
CTAAGT		1																																																															1
CTACCA	1																																																																1
CTATGG		1																																																															1
CTCATC	2				1																																																												3
CTCCCC	1	4																																																															5
CTCGCC	1																																																																1
CTCTGG	1																																																																1
CTCTTC			1																																																														1
CTGACT	1																																																																1
CTGATC			1																																																														1
CTGCAC	1																																																																1
CTGGGG	1																																																																1
CTGGTC	1																																																																1
CTGTCC	1																																																																1
CTGTTG	2																																																																2
CTTATC	1																																																																1
CTTCCC	1																																																																1
CTTCGT		1																																																															1
CTTGCC	1																																																																1
CTTGCT	1																																																																1
CTTGGT	1																																																																1
CTTTCT			1																																																														1
CTTTGC		1																																																															1
CTTTTC	1																																																																1
CTTTTT	1																																																																1
GAAAAA			1																																																														1
GAACCT	1																																																																1
GAACGA		1																																																															1
GAAGAG	2		1																																																														3
GAAGAT	2																																																																2
GAAGGA	1																																																																1
GAATCC		1																																																															1
GACGAA	1																																																																1
GACGAG	1																																																																1
GACGAT	1																																																																1
GAGAAC	1																																																																1
GAGATG		1																																																															1
GAGCAG	1																																																																1
GAGCGT	1																																																																1
GAGGAA	4																																																																4
GAGGAC	1																																																																1
GAGGAT	1																																																																1
GAGGCG	1																																																																1
GAGGCT	1																																																																1
GAGGGT		1																																																															1
GATAAA	1																																																																1
GATCCG		1																																																															1
GATCCT	1																																																																1
GATGAA	1																																																																1
GATGAG		1																																																															1
GATGTC	1																																																																1
GATTCT		1																																																															1
GCAACA	1																																																																1
GCAACC	1																																																																1
GCACAA	1																																																																1
GCACCA	2																																																																2
GCAGAA	1																																																																1
GCAGGC	1																																																																1
GCCACA	1																																																																1
GCCGAC	1																																																																1
GCCGGC	1																																																																1
GCCTGG	1																																																																1
GCGTTT	1																																																																1
GCTCAA	1																																																																1
GCTCAG	1																																																																1
GCTGAG	1																																																																1
GCTGAT	1																																																																1
GCTGGT			1																																																														1
GCTTCC	1																																																																1
GCTTGA	1																																																																1
GGAAAA	1																																																																1
GGAAGG	1																																																																1
GGACGA	1																																																																1
GGAGAA		1																																																															1
GGAGAG	1																																																																1
GGAGCA	1																																																																1
GGAGCG	1																																																																1
GGAGGC	1																																																																1
GGAGGG	1																																																																1
GGAGGT	1																																																																1
GGCCCG	1																																																																1
GGCCTC	1																																																																1
GGCGAC	1																																																																1
GGCGAT	1																																																																1
GGCGGA	2																																																																2
GGCGGG	1																																																																1
GGCGGT	1	1																																																															2
GGCTCA	1																																																																1
GGCTTG	1																																																																1
GGGACT	1																																																																1
GGGAGA		1																																																															1
GGGAGG	2																																																																2
GGGCAA	1	1																																																															2
GGGCAT	1																																																																1
GGGCGA	1																																																																1
GGGGAT	1																																																																1
GGGGGA	7	1																																																															8
GGGGGT	1																																																																1
GGGTAT	1																																																																1
GGGTGC	1																																																																1
GGGTTT	1																																																																1
GGTAGT	1																																																																1
GGTCGC	1																																																																1
GGTGGA	1																																																																1
GGTGGC	1																																																																1
GGTTCA	1																																																																1
GGTTCT	1																																																																1
GGTTTC	1																																																																1
GTACCG	1																																																																1
GTCCGA	1																																																																1
GTCGGA	1																																																																1
GTCTCT	2																																																																2
GTCTGG		1																																																															1
GTCTTT	1																																																																1
GTGCCC	1																																																																1
GTGGTT	1																																																																1
GTTCCA	1																																																																1
GTTCTT	1																																																																1
GTTGCC	1																																																																1
TACATT	1																																																																1
TACCCA	1																																																																1
TACCGG	1																																																																1
TACCGT	1																																																																1
TAGCAT		1																																																															1
TAGGAG	1																																																																1
TAGGAT	1																																																																1
TATGGG	1																																																																1
TATTTT	3																																																																3
TCAACA	2																																																																2
TCACCT				1																																																													1
TCAGAT	1																																																																1
TCATCC	2																																																																2
TCATCT		1																																																															1
TCATTG		1																																																															1
TCATTT	1																																																																1
TCCACC	1																																																																1
TCCCAA	1																																																																1
TCCCGC	1																																																																1
TCCCTC	1																																																																1
TCCGCT	1																																																																1
TCCTCA	1	1																																																															2
TCCTCT	1																																																																1
TCCTTC	1																																																																1
TCCTTG	1																																																																1
TCCTTT	1																																																																1
TCGCAT	1																																																																1
TCGCTG	1																																																																1
TCTAAA	2																																																																2
TCTCAG	1																																																																1
TCTCCC	3																																																																3
TCTCCT	1																																																																1
TCTCTG	1																																																																1
TCTCTT	1																																																																1
TCTGGG		1																																																															1
TCTTCA	1																																																																1
TCTTCC	2	1																																																															3
TCTTCG	1																																																																1
TCTTTT	1																																																																1
TGACCT	1																																																																1
TGACGA		1																																																															1
TGAGCC	1																																																																1
TGATTC					1																																																												1
TGATTT	1																																																																1
TGCAAC	1																																																																1
TGCAGG	1																																																																1
TGCCCC	1																																																																1
TGCCTT	1																																																																1
TGCGAG	1																																																																1
TGGCAG	1																																																																1
TGGCTC	1																																																																1
TGGGAT	2																																																																2
TGGGTT		1																																																															1
TGGTGT	1																																																																1
TGTCCT	1																																																																1
TGTTGA	1																																																																1
TGTTGC		1																																																															1
TGTTTT	1																																																																1
TTACAA	1																																																																1
TTAGGC	1																																																																1
TTCACA	1																																																																1
TTCAGG		1																																																															1
TTCATC	1																																																																1
TTCCCC						1																																																											1
TTCCTT	1																																																																1
TTCTCC	2																																																																2
TTCTCT																						1																																											1
TTCTTG									1																																																								1
TTGGCG	1																																																																1
TTTATT	1																																																																1
TTTCCC	2																																																																2
TTTGGG	1																																																																1
TTTGGT	1																																																																1
TTTTTA	2																																																																2
TTTTTC	2																																																																2
TTTTTG	1																																																																1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	6	8	4	3	3	5	3	5	7	5	2	3	6		1	1	3								1																							66
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		5	2		1		2	1																																								11
AC/GT	-	-	-	16	11	3	3	1	1		1																																																						36
AG/CT	-	-	-	53	13	6	3	2		2												1																																											80
AT/AT	-	-	-	45	25	22	18	4	4	4	2	2																																																					126
CG/CG	-	-	-	2																																																													2
AAC/GTT	-	-	21	6	5	1	3	1																																																									37
AAG/CTT	-	-	62	16	4	3	1				1																																																						87
AAT/ATT	-	-	16	7	2								1																																																				26
ACC/GGT	-	-	27	7	6	2	1	1	1			1						1																																															47
ACG/CGT	-	-	11	5	1		1																																																										18
ACT/AGT	-	-	6	3																		1													1																														11
AGC/CTG	-	-	34	20	4	3	3	1				1																																																					66
AGG/CCT	-	-	32	7	5																																																												44
ATC/ATG	-	-	29	8	3	1		1																																																									42
CCG/CGG	-	-	17	2	2																																																												21
AAAC/GTTT	-	4	1																																																														5
AAAG/CTTT	-	6	2				1																																																										9
AAAT/ATTT	-	12	4	1										1							1																															1	1											1	22
AACC/GGTT	-	2																																																															2
AACG/CGTT	-	1																																																															1
AACT/AGTT	-		1																																																														1
AAGC/CTTG	-	3																																																															3
AAGG/CCTT	-	15	4																																																														19
AATC/ATTG	-	1																																																															1
AATG/ATTC	-	1	1	1				1																																																									4
AATT/AATT	-	1																																																															1
ACAT/ATGT	-	1																																																															1
ACCT/AGGT	-	1																																																															1
ACGC/CGTG	-	1																																																															1
ACGG/CCGT	-	5																																																															5
ACTG/AGTC	-			1																																																													1
AGAT/ATCT	-	1																																																															1
AGCG/CGCT	-	1																																																															1
AGGC/CCTG	-	1																																																															1
AGGG/CCCT	-	1																																																															1
ATCC/ATGG	-	14	6		3																																																												23
ATGC/ATGC	-	4																																																															4
CCGG/CCGG	-	1																																																															1
AAAAC/GTTTT	6				1																																																												7
AAAAG/CTTTT	9	2																																																															11
AAAAT/ATTTT	15	1																																																															16
AAACC/GGTTT	1																																																																1
AAACG/CGTTT	2																																																																2
AAAGG/CCTTT	6																																																																6
AAAGT/ACTTT	1																																																																1
AAATC/ATTTG	1	1																																																															2
AAATG/ATTTC	1																																																																1
AAATT/AATTT	1	1																																																															2
AACCC/GGGTT	2																																																																2
AACCT/AGGTT	1	1																																																															2
AAGAC/CTTGT	2																																																																2
AAGAG/CTCTT	6																																																																6
AAGCC/CTTGG			1																																																														1
AAGGG/CCCTT	4																																																																4
AAGTG/ACTTC	1	1																																																															2
AATAC/ATTGT	3																																																																3
AATAG/ATTCT	2																																																																2
AATAT/ATATT	3	1																																																															4
AATCC/ATTGG	2	1																																																															3
AATCG/ATTCG	2																																																																2
AATCT/AGATT	13																																																																13
AATGC/ATTGC	1																																																																1
AATGG/ATTCC	2																																																																2
AATGT/ACATT	6	2																																																															8
AATTC/AATTG		1																																																															1
ACACG/CGTGT	2																																																																2
ACAGT/ACTGT	1																																																																1
ACATC/ATGTG	1																																																																1
ACATG/ATGTC	2																																																																2
ACCAT/ATGGT	1																																																																1
ACCCC/GGGGT	2																																																																2
ACCCT/AGGGT	1	1																																																															2
ACCGC/CGGTG	1																																																																1
ACCGT/ACGGT	2																																																																2
ACGAT/ATCGT	1																																																																1
ACGCC/CGTGG	1																																																																1
ACGCG/CGCGT	9																																																																9
ACTAT/AGTAT	1																																																																1
ACTCG/AGTCG	2																																																																2
ACTGG/AGTCC	1																																																																1
AGAGC/CTCTG	1																																																																1
AGAGG/CCTCT	1																																																																1
AGATC/ATCTG		2																																																															2
AGATG/ATCTC	7																																																																7
AGCAT/ATGCT	2																																																																2
AGGAT/ATCCT	1																																																																1
AGGGC/CCCTG	2																																																																2
AGGGG/CCCCT	7	1																																																															8
ATCCC/ATGGG	2																																																																2
ATCCG/ATCGG	2																																																																2
ATCGC/ATGCG	2																																																																2
AAAAAC/GTTTTT	15																																																																15
AAAAAG/CTTTTT	6		1																																																														7
AAAAAT/ATTTTT	8	1																																																															9
AAAACC/GGTTTT	1																																																																1
AAAAGC/CTTTTG		1																																																															1
AAAAGG/CCTTTT	8																																																																8
AAAATC/ATTTTG	1																																																																1
AAAATG/ATTTTC	1																																																																1
AAACAC/GTGTTT			1																																																														1
AAACCC/GGGTTT	4	1																																																															5
AAACCG/CGGTTT	1																																																																1
AAACGC/CGTTTG	1																																																																1
AAAGAC/CTTTGT	1																																																																1
AAAGAG/CTCTTT	1		3																			1																																											5
AAAGAT/ATCTTT	1																																																																1
AAAGCC/CTTTGG	2																																																																2
AAAGGC/CCTTTG	1	1																																																															2
AAAGGG/CCCTTT	5	1																																																															6
AAAGGT/ACCTTT		1																																																															1
AAATAT/ATATTT	1																																																																1
AAATCT/AGATTT	2																																																																2
AAATGC/ATTTGC		1																																																															1
AAATGG/ATTTCC	1																																																																1
AAATGT/ACATTT	1																																																																1
AACAAG/CTTGTT	1								1																																																								2
AACACC/GGTGTT	1				1																																																												2
AACAGC/CTGTTG	6	4																																																															10
AACAGG/CCTGTT	1																																																																1
AACATC/ATGTTG	3																																																																3
AACATG/ATGTTC	1																																																																1
AACCAC/GGTTGT	1																																																																1
AACCAG/CTGGTT	2																																																																2
AACCCG/CGGGTT	1																																																																1
AACCCT/AGGGTT	1																																																																1
AACCGC/CGGTTG	1																																																																1
AACCTC/AGGTTG	1																																																																1
AACCTG/AGGTTC	2	1																																																															3
AACGAG/CGTTCT	1	1																																																															2
AACGCC/CGTTGG	2																																																																2
AACGGC/CCGTTG	2																																																																2
AACGGT/ACCGTT	1																																																																1
AACTGC/AGTTGC	1																																																																1
AACTGG/AGTTCC	1																																																																1
AAGACC/CTTGGT	2																																																																2
AAGACG/CGTCTT	3	1																																																															4
AAGAGC/CTCTTG	1																																																																1
AAGAGG/CCTCTT	9	1	2																																																														12
AAGATG/ATCTTC	7	1																																																															8
AAGCAC/CTTGTG	3																																																																3
AAGCAG/CTGCTT	4																																																																4
AAGCCC/CTTGGG	1	1																																																															2
AAGCCT/AGGCTT	1																																																																1
AAGCGG/CCGCTT	2																																																																2
AAGCTC/AGCTTG	5	1																																																															6
AAGCTG/AGCTTC		1																																																															1
AAGGAC/CCTTGT	2																																																																2
AAGGAG/CCTTCT	7	1																																																															8
AAGGAT/ATCCTT	1																																																																1
AAGGCC/CCTTGG	1																																																																1
AAGGGC/CCCTTG	2	1																																																															3
AAGGGG/CCCCTT	3	1				1																																																											5
AAGGTC/ACCTTG	1																																																																1
AAGGTG/ACCTTC				1																																																													1
AAGTCC/ACTTGG	1																																																																1
AAGTCT/ACTTAG		1																																																															1
AAGTGC/ACTTGC	1																																																																1
AATACT/AGTATT	1																																																																1
AATCAG/ATTCTG		1			1																																																												2
AATCCC/ATTGGG	4						1																																																										5
AATCCG/ATTCGG		1																																																															1
AATCCT/AGGATT	1																																																																1
AATCGC/ATTGCG	1																																																																1
AATCGG/ATTCCG	1																																																																1
AATCTG/AGATTC	1																																																																1
AATGAC/ATTGTC	1	1																																																															2
AATGAT/ATCATT	1																																																																1
AATGCG/ATTCGC	1																																																																1
AATGCT/AGCATT		1																																																															1
AATGGC/ATTGCC	1																																																																1
AATGGG/ATTCCC	2																																																																2
AATGTG/ACATTC	1																																																																1
AATTAC/AATTGT	2																																																																2
AATTAG/AATTCT		1																																																															1
ACACAG/CTGTGT	1																																																																1
ACACCC/GGGTGT	2																																																																2
ACACCG/CGGTGT	1																																																																1
ACAGAG/CTCTGT	4																																																																4
ACAGCC/CTGTGG	3																																																																3
ACAGCG/CGCTGT	1																																																																1
ACAGGG/CCCTGT	1																																																																1
ACATAT/ATATGT	1																													1																																			2
ACATCG/ATGTCG	1																																																																1
ACATCT/AGATGT	2																																																																2
ACCACT/AGTGGT	2																																																																2
ACCAGC/CTGGTG	2		1																																																														3
ACCAGG/CCTGGT	1																																																																1
ACCATC/ATGGTG	4																																																																4
ACCCAG/CTGGGT	2	2																																																															4
ACCCAT/ATGGGT	4																																																																4
ACCCCC/GGGGGT	1																																																																1
ACCCGC/CGGGTG	1		1																																																														2
ACCCTC/AGGGTG	1	1																																																															2
ACCGCC/CGGTGG	4	1																																																															5
ACCGCG/CGCGGT	2																																																																2
ACCGCT/AGCGGT	1																																																																1
ACCGGC/CCGGTG	1																																																																1
ACCGGG/CCCGGT	1	1																																																															2
ACCGGT/ACCGGT	2																																																																2
ACCTCC/AGGTGG	9	1																																																															10
ACCTGC/AGGTGC	4																																																																4
ACGAGG/CCTCGT	6																																																																6
ACGATG/ATCGTC	1	1																																																															2
ACGCAG/CGTCTG	2																																																																2
ACGCCG/CGGCGT	1																																																																1
ACGCTC/AGCGTG	1																																																																1
ACGGAG/CCGTCT	1																																																																1
ACGGCG/CCGTCG	3																																																																3
ACGGGC/CCCGTG	1																																																																1
ACTATC/AGTGAT	1																																																																1
ACTCCG/AGTCGG	1																																																																1
ACTCCT/AGGAGT	1																																																																1
ACTCGC/AGTGCG	1																																																																1
ACTCGG/AGTCCG	2																																																																2
ACTCTG/AGAGTC	1																																																																1
ACTGAG/AGTCTC	2																																																																2
ACTGCC/AGTGGC	1																																																																1
ACTGGG/AGTCCC	1	1																																																															2
AGAGCC/CTCTGG	2																																																																2
AGAGGG/CCCTCT	9	1																																																															10
AGATGG/ATCTCC		1																																																															1
AGCAGG/CCTGCT	4																																																																4
AGCATC/ATGCTG	1																																																																1
AGCCAT/ATGGCT	1	1																																																															2
AGCCCC/CTGGGG	3																																																																3
AGCCTC/AGGCTG	2																																																																2
AGCCTG/AGGCTC	4																																																																4
AGCGGG/CCCGCT	3																																																																3
AGCTCC/AGCTGG	1	1																																																															2
AGGATC/ATCCTG	1		1																																																														2
AGGATG/ATCCTC	7	3			1																																																												11
AGGCCC/CCTGGG	1																																																																1
AGGCCG/CCTCGG	1																																																																1
AGGCGC/CCTGCG	1																																																																1
AGGCGG/CCGCCT	4																																																																4
AGGGCG/CCCTCG	2																																																																2
AGGGGC/CCCCTG	2	1																																																															3
AGGGGG/CCCCCT	12	5																																																															17
ATATCC/ATATGG	1																																																																1
ATCCCC/ATGGGG	3	2																																																															5
ATCCCG/ATCGGG	1																																																																1
ATCCGG/ATCCGG		1																																																															1
ATCGCC/ATGGCG	2																																																																2
ATCGGC/ATGCCG	2																																																																2
ATGCCC/ATGGGC	1		1																																																														2
CCCCCG/CGGGGG	4																																																																4
CCCGGG/CCCGGG	1																																																																1
CCGGCG/CCGGCG	1																																																																1
