Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-1/megassr/results/hub_GCA_002220035.1/fasta/hub_GCA_002220035.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              574
Total size of examined sequences (bp):           17986510
Total number of identified SSRs:                 1531
Number of SSR containing sequences:              397
Number of sequences containing more than 1 SSR:  292
Number of SSRs present in compound formation:    110


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	163
2	212
3	412
4	92
5	154
6	498

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	11	9	9	8	3	5	6	7	4	2	1	3	2	2	3	1		2										1				79
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	1								1			2																			6
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1					1							1																		1	4
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	14	9	10	5	5	7	5	4	3	2	3	2	1	1	1			1								1						74
AC	-	-	-	3	7	2	2		1			1																																					16
AG	-	-	-	10	3			1																																									14
AT	-	-	-	19	11	5	6	2	4	1	1																																						49
CA	-	-	-	2	1		2																																										5
CT	-	-	-	17	1	3							1						2	1																													25
GA	-	-	-	10	4	2		2	1																																								19
GC	-	-	-	1																																													1
GT	-	-	-	4				1																																									5
TA	-	-	-	17	12	4	3	2	1		2																																						41
TC	-	-	-	15	3	2	2			1												1																											24
TG	-	-	-	7	3	1	1			1																																							13
AAC	-	-	2	1																																													3
AAG	-	-	13	3			1	1																																									18
AAT	-	-	2		3																																												5
ACA	-	-	1	2	4	1																																											8
ACC	-	-	2	1	2	1	1																																										7
ACG	-	-	1	1																																													2
ACT	-	-	1																																														1
AGA	-	-	8	3	1	2																																											14
AGC	-	-	4	3																																													7
AGG	-	-	4		1																																												5
AGT	-	-			2																																												2
ATA	-	-	6	1	1																																												8
ATC	-	-	3	1																																													4
ATG	-	-	5		1																																												6
CAA	-	-	3	3																							1																						7
CAC	-	-	4	1							2																																						7
CAG	-	-	6	1		3																																											10
CAT	-	-	4	1				1																																									6
CCA	-	-	4	5			1	1	1																																								12
CCG	-	-	4			1																																											5
CCT	-	-	4	1																																													5
CGA	-	-	2	2																																													4
CGC	-	-	1	2																																													3
CGG	-	-	2				1																																										3
CGT	-	-	4	1	2	1																																											8
CTA	-	-	4							1																																							5
CTC	-	-	3	1																																													4
CTG	-	-	4	2	2																																												8
CTT	-	-	8	4	1	1		1																																									15
GAA	-	-	12	3	1		3																																										19
GAC	-	-	2	1	1																																												4
GAG	-	-	6	3		1																																											10
GAT	-	-	4		2	2	1																																										9
GCA	-	-	3				1																																										4
GCC	-	-	4		1																																												5
GCG	-	-	2			1																																											3
GCT	-	-	8	5	2																																												15
GGA	-	-	4				1																																										5
GGC	-	-	7	1																																													8
GGT	-	-	6	1	4				2	1																																							14
GTA	-	-	2																																														2
GTC	-	-	1																																														1
GTG	-	-	4	3																																													7
GTT	-	-	1	1			3																																										5
TAA	-	-	2			1																																											3
TAG	-	-																								2																							2
TAT	-	-	1																																														1
TCA	-	-	6	1																																													7
TCC	-	-	9	2	2	1			1																																								15
TCG	-	-		2																																													2
TCT	-	-	11		3											1																																	15
TGA	-	-	2	1																																													3
TGC	-	-	4	2	2	2			1																																								11
TGG	-	-	5			1	2																																										8
TGT	-	-	6	1	3	1	3	1				1																																					16
TTA	-	-	4	1	1																																												6
TTC	-	-	6		2												2																																10
TTG	-	-	3	1	1		2	2																	1																								10
AAAC	-	1																																															1
AAAG	-		1																																														1
AAAT	-	3																																															3
AACA	-	2	1																																														3
AACG	-		1																																														1
AAGA	-	2	1																																														3
AAGG	-	1	1																																														2
AATA	-	2																																															2
ACAT	-		1																																														1
ACGC	-	1																																															1
ACTG	-						1																																										1
AGGA	-	6	2																																														8
AGGG	-	1																																															1
ATAA	-	1								1											1																												3
ATAC	-			2																																													2
ATCA	-		1																																														1
ATGA	-	2																																															2
ATTA	-		1																																														1
ATTT	-	1																																															1
CAAA	-		1																																														1
CAAC	-	1																																															1
CATC	-	1	1																																														2
CGCC	-		1																																														1
CGGA	-	1																																															1
CGTC	-	2																																															2
CTGC	-			1																																													1
CTTC	-	1		1																																													2
GAAA	-	2																																															2
GAAG	-	1	3																																														4
GAAT	-			1																																													1
GACG	-		1																																														1
GAGG	-		1																																														1
GATG	-	2																																															2
GCAT	-	1																																															1
GCCG	-	1																																															1
GGAC	-	1																																															1
GGAT	-		1																																														1
GTGA	-		1																																														1
GTTT	-	1																																															1
TAAT	-	1																																															1
TCCA	-	3																																															3
TCCT	-	2	1																																														3
TCTA	-	1																																															1
TGAC	-	1																																															1
TGGA	-	1		1																																													2
TGGG	-	1																																															1
TTAA	-	2																																															2
TTAT	-	2	3																																														5
TTCC	-	1	1	1		1																																											4
TTCT	-	1																																															1
TTGC	-		1																																														1
TTTA	-												1																																				1
AAAAG	2																																																2
AAAAT	5																																																5
AAACA	1																																																1
AAAGA	1																																																1
AAAGG	2	1																																															3
AACCA	1																																																1
AAGAA	1		1																																														2
AAGAG	2																																																2
AAGGG	1																																																1
AAGTG	1		1																																														2
AATAC	1																																																1
AATCC	1																																																1
AATCG	1																																																1
AATGA	1																																																1
AATGT	1																																																1
AATTA	1																																																1
ACAAG	1																																																1
ACAGG	1																																																1
ACATT	1																																																1
ACCCT	1																																																1
ACGCG	3																																																3
ACGGT	1																																																1
AGAAA	1																																																1
AGAGA	2																																																2
AGATG		1																																															1
AGATT	4																																																4
AGCCA	1																																																1
AGCGA	1																																																1
AGGGA	1																																																1
AGGGG	2																																																2
AGGTT	1																																																1
ATAAA	2																																																2
ATCGA	1																																																1
ATGGA	1																																																1
ATGTA	2																																																2
ATTAT	1																																																1
ATTGA	1																																																1
ATTGC	1																																																1
ATTTT	1																																																1
CACCC			1																																														1
CATCT	1	1																																															2
CATGT	1																																																1
CATTA	3																																																3
CCATC	1																																																1
CCGCA	1																																																1
CCTAC				1																																													1
CGACT	1																																																1
CGATG	1																																																1
CGATT	1																																																1
CGCGT	2																																																2
CTAAT	1																																																1
CTCCC		1																																															1
CTGGA	1																																																1
CTTCT	1																																																1
CTTTC	2																																																2
GAAAA	1																																																1
GAAAG	1																																																1
GACGC	3																																																3
GAGAA	1																																																1
GAGAT	2	1																																															3
GAGTC	1																																																1
GATAA	1																																																1
GATGT		1																																															1
GATTT	1																																																1
GCATA	1																																																1
GCATC	1																																																1
GCGGG	2																																																2
GCTTT	1																																																1
GGAAA	1																																																1
GGAGA	1																																																1
GGAGG	1																																																1
GGAGT	1																																																1
GGATC	1																																																1
GGCGG	1																																																1
GGGAA	1																																																1
GGGGA	1																																																1
GGGTG	1																																																1
GGGTT	2																																																2
GGTAC	1																																																1
GGTGG	1																																																1
GTCAT		1																																															1
GTTTT	1																																																1
TAAAT	1	1																																															2
TAATC	1																																																1
TACAT	1																																																1
TATAC	1																																																1
TATTT	1																																																1
TCATT	1																																																1
TCCTA	1																																																1
TCCTT	1																																																1
TCTAA	1																																																1
TCTGC	1																																																1
TCTTC	2																																																2
TCTTT	2																																																2
TGAGA	1	1																																															2
TGATC	1																																																1
TGGAC			1																																														1
TGTAT	1																																																1
TGTCG	1																																																1
TGTCT			1																																														1
TGTTC	1																																																1
TTATA	2																																																2
TTCCA		1																																															1
TTCCT	1																																																1
TTCGT	1																																																1
TTGTA	1																																																1
TTTAT	1																																																1
TTTCA	1																																																1
TTTCG		1																																															1
TTTTA	2	2																																															4
TTTTC	3	1																																															4
TTTTG	2																																																2
AAAAAC	1																																																1
AAAAAG	1																																																1
AAAAAT	2																																																2
AAAATA	2																																																2
AAACCC		1																																															1
AAAGAA	1																																																1
AAAGAG		1																																															1
AAAGGG					1																																												1
AAAGGT	1																																																1
AAATAT	1																																																1
AACAAA		1																																															1
AACCCA	1																																																1
AACCCG	1																																																1
AACGGC		1																																															1
AAGAAA		1																																															1
AAGACG	1																																																1
AAGCAG	2																																																2
AAGCCC	1																																																1
AAGCGG	1																																																1
AAGGAA		1																																															1
AAGGAG		1																																															1
AAGGGA	1																																																1
AAGGGG	1																																																1
AAGTGC	1																																																1
AATCCC		1																																															1
ACAATG		1																																															1
ACAATT	1																																																1
ACAGCA		1																																															1
ACATGA	1																																																1
ACCAAG	1																																																1
ACCAGA	1																																																1
ACCCAG	1																																																1
ACCGGG	1																																																1
ACCTGC	1																																																1
ACGATA	1																																																1
ACTCAA	1																																																1
AGAAGG	1																																																1
AGACGA			1																																														1
AGAGAA	1																																																1
AGAGAC	1																																																1
AGAGTT	1																																																1
AGATGT		1																																															1
AGCCAA	2																																																2
AGCGGT	1																																																1
AGCTTC	1																																																1
AGGGAG	1																																																1
AGGGCG	1																																																1
AGTATT		1																																															1
AGTGGA	1																																																1
AGTGGT	1																																																1
ATAATG	1																																																1
ATAGCA	2																																																2
ATATCC		1																																															1
ATCACC		1																																															1
ATCCAG	1																																																1
ATCCCA	1																																																1
ATCTAC			1																																														1
ATGATC		1																																															1
ATGGAC	1																																																1
ATGGAT	1																																																1
ATGGCA	1																																																1
ATGGGA				1																																													1
ATGGGC	1																																																1
ATGGGT	2																																																2
ATTCCC	1																																																1
CAAAAA	1	1		1																																													3
CAAAAC	1																																																1
CAACAG	2	1																																															3
CAACCA	1																																																1
CAACTC				1																																													1
CAAGCA	2		1																																														3
CAAGCT		1																																															1
CAAGGC	1																																																1
CAATCG	1																																																1
CACCAG		1																																															1
CACCAT	1																																																1
CACCGC		1																																															1
CACCTC	2																																																2
CACTAT	1																																																1
CAGAAG	1																																																1
CAGCAA	3								2																																								5
CAGGCT	1																																																1
CATATA	1																																																1
CATCGA			1																																														1
CATCGG	1																																																1
CATCTA	1																																																1
CATCTT	1		1																																														2
CATGCC	1																																																1
CATGGG	1																																																1
CATGTT		1																																															1
CCAAAC	1	1																																															2
CCAACA							2																																										2
CCACAT		1																																															1
CCACCT	1	1																																															2
CCACGG		2																																															2
CCAGAA	1																																																1
CCATCC	2			3																																													5
CCATTC	1																																																1
CCATTT	1																																																1
CCCAAA	1																																																1
CCCACG			1																																														1
CCCAGA			1																																														1
CCCAGC	1																																																1
CCCATA	1																																																1
CCCATC					2																																												2
CCCCAA		1																																															1
CCCCCG	1																																																1
CCCCCT	1																																																1
CCCCGC	1																																																1
CCCCTC	2																																																2
CCCGTA								2																																									2
CCCTGC	1																																																1
CCCTTT	3																																																3
CCGACG		1																																															1
CCGCCC	1																																																1
CCGCCT	1																																																1
CCGGCA	1																																																1
CCTCAA	1																																																1
CCTCAC	1																																																1
CCTCAT	1																																																1
CCTCCA	2																																																2
CCTCCC		1																																															1
CCTCGG	1																																																1
CCTCTC	2	1																																															3
CCTGAG	1																																																1
CCTGCC	1																																																1
CCTGCT	2																																																2
CCTGTT	1																																																1
CCTTCA	1																																																1
CCTTCC	1																																																1
CCTTGC	1																																																1
CCTTTT	2																																																2
CGAACC	1																																																1
CGACAC		1																																															1
CGACAT	1																																																1
CGAGGA	2																																																2
CGAGGC	1																																																1
CGATGC			1																																														1
CGATTC	1																																																1
CGCCAA	1																																																1
CGCCCC		2																																															2
CGCCGA		1																																															1
CGCCTG	1																																																1
CGCGGG	1																																																1
CGGACA		1																																															1
CGGCAC	1																																																1
CGGTCC	2																																																2
CGTATG		1																																															1
CGTCCT		1																																															1
CGTCGC	1																																																1
CTAAGT			1																																														1
CTACCA	1																																																1
CTCATC	2																																																2
CTCATG	1																																																1
CTCCCC	3																																																3
CTCCCT	1			1																																													2
CTCTGG	1																																																1
CTCTTC		1																																															1
CTGACT	1																																																1
CTGCGC	1																																																1
CTGCTC	2																																																2
CTGGAG	2																																																2
CTGGGG		1																																															1
CTGGGT	1																																																1
CTGGTG				1																																													1
CTGTCC	1																																																1
CTGTTG	1																																																1
CTTATC	1																																																1
CTTCCT			1																																														1
CTTCGT			2																																														2
CTTCTC	1																																																1
CTTGCT	1																																																1
CTTGGT		1																																															1
CTTTCT		1																																															1
CTTTGC	1																																																1
CTTTTC	1																																																1
GAAAAA	1	1																																															2
GAAAGG		1																																															1
GAAGAG	4	1																																															5
GAAGAT		1																																															1
GAAGGA	1		1																																														2
GAAGTG		1																																															1
GAATCC	1																																																1
GACGAA	1				1																																												2
GACGAG	2																																																2
GACGAT	1																																																1
GACGCC	1																																																1
GACTCG	1																																																1
GAGAAC	1																																																1
GAGATG	1																																																1
GAGCAG	1																																																1
GAGCCC	1																																																1
GAGCCT		1																																															1
GAGCGT					1																																												1
GAGGAA	1																																																1
GAGGCT	1																																																1
GAGGGG	1																																																1
GAGGGT		1																																															1
GATAAA	1																																																1
GATACG		1																																															1
GATACT	1																																																1
GATCGC	1																																																1
GATGAA	3	1																																															4
GATGAG		1																																															1
GATGGA		1																																															1
GATGTC			1																																														1
GATTCT	1																																																1
GATTTT	2																																																2
GCAACA		2																																															2
GCAAGA	1																																																1
GCACAA	1																																																1
GCACAG	1																																																1
GCACCA	1	1																																															2
GCACCG		1																																															1
GCAGAA	1																																																1
GCAGAG	1																																																1
GCCACA	1																																																1
GCCGAA	1																																																1
GCCGGG	1																																																1
GCGATG		1																																															1
GCGGGA	1																																																1
GCGTCC	1																																																1
GCGTCT			1																																														1
GCTCAA	1																																																1
GCTCAG				1																																													1
GCTGAG	1																																																1
GCTGAT	2																																																2
GCTGGA	1																																																1
GCTTCA	1																																																1
GCTTCC	1																																																1
GCTTGA	1																																																1
GGAAAA	1																																																1
GGAAAG	1																																																1
GGAAGA	1																																																1
GGAAGG	1																																																1
GGACGA	1																																																1
GGAGAA					1																																												1
GGAGAG	1																																																1
GGAGAT		1																																															1
GGAGCA	1					2							2																																				5
GGAGCT		1																																															1
GGAGGG			1																																														1
GGAGGT	1	1																																															2
GGATGA				1																																													1
GGATGC	2																																																2
GGCAAG	1																																																1
GGCCCG	1																																																1
GGCGAT	2																																																2
GGCGGA	2																																																2
GGCGGG	2																																																2
GGCGGT			1																																														1
GGCTCT		1																																															1
GGGAGA	1																																																1
GGGAGC	2																																																2
GGGAGG	3	1																																															4
GGGATC	1																																																1
GGGCAA	2																																																2
GGGCGC	1																																																1
GGGCGT	1		1																																														2
GGGGAA	1																																																1
GGGGAG	1																																																1
GGGGAT	1																																																1
GGGGCG	1																																																1
GGGGCT					1																																												1
GGGGGA	5	1																																															6
GGGGGC	1																																																1
GGGGGT	1	1																																															2
GGGTGC	1																																																1
GGGTGT		2		1																																													3
GGGTTT	1																																																1
GGTCGC	1																																																1
GGTGGA		1																																															1
GGTTCA			1																																														1
GGTTCG		1																																															1
GGTTCT	1																																																1
GGTTTC	1																																																1
GTATTC	1																																																1
GTCGCC	1																																																1
GTCGGA	1																																																1
GTCGTT		1																																															1
GTCTCT	1	1																																															2
GTCTGC	1																																																1
GTCTTT	1																																																1
GTGCCA				1																																													1
GTGCCC	1																																																1
GTGCGA							1																																										1
GTGCGC		1																																															1
GTGGGC	1																																																1
GTGGGT	1																																																1
GTTCTT	1																																																1
GTTGTG	1																																																1
GTTTCG	1																																																1
TAACAC	1																																																1
TAAGGA	1																																																1
TAATGT	1																																																1
TACATT	1																																																1
TACCCA	2			1																																													3
TACCCG	1																																																1
TACCGG	1																																																1
TACCGT	1																																																1
TACGGC	1																																																1
TAGCAT	1																																																1
TATTTT	1																																																1
TCAACA	1																																																1
TCAACT	1																																																1
TCACCA	1																																																1
TCAGAG	1																																																1
TCAGAT	1																																																1
TCATCC	1		1																																														2
TCATCT		1																																															1
TCATTG			1																																														1
TCATTT	1																																																1
TCCATT	1																																																1
TCCCAA	1																																																1
TCCCGC	1		1																																														2
TCCCTC	1		1		1																																												3
TCCGCT	1																																																1
TCCTCA	2					1																																											3
TCCTCT	1																																																1
TCCTTC	1																																																1
TCCTTT	1		1																																														2
TCGATG	1																																																1
TCGCAC	1																																																1
TCGCAT		1																																															1
TCGCTG	1																																																1
TCTAAA	1																																																1
TCTCAG			1			1																																											2
TCTCCC	2																																																2
TCTCCG		1																																															1
TCTGCT	1																																																1
TCTTCA	2																																																2
TCTTCC	2				1																																												3
TCTTCG	1																																																1
TCTTGC		1																																															1
TCTTTT	1																																																1
TGAGCC		1																																															1
TGAGGG	1																																																1
TGATGC	1																																																1
TGATTC	1																																																1
TGCAAC	1																																																1
TGCAGG	1																																																1
TGCCCC			1																																														1
TGCCCT	1																																																1
TGCCGG	1																																																1
TGCCTT	1																																																1
TGCGAG				1																																													1
TGCGGG	1																																																1
TGCTCG	1																																																1
TGCTTC	1																																																1
TGGCGT	1																																																1
TGGCTC		1																																															1
TGGGAA	2																																																2
TGGGAG	1																																																1
TGGGAT	1																																																1
TGGGGA	1																																																1
TGGGTT	1																																																1
TGGTGT	1			1																																													2
TGTCAT	1																																																1
TGTCCT	1																																																1
TGTGCG	1																																																1
TGTGGA	1																																																1
TGTGGC		1																																															1
TGTTGA	1																																																1
TGTTGC	2																																																2
TGTTTT	1																																																1
TTACAA	1																																																1
TTAGAT	1																																																1
TTCAAT	1																																																1
TTCACA		1																																															1
TTCAGG	1																																																1
TTCATC	2																																																2
TTCCTT	2																																																2
TTCTCC	1																																																1
TTCTCT	1																																																1
TTCTTG	1	1																																															2
TTGAGA		1																																															1
TTGAGC	1																																																1
TTGCGA			1																																														1
TTGGCG	1																																																1
TTGGGA							2																																										2
TTGGGT			1																																														1
TTGTGC	1																																																1
TTTATT	1																																																1
TTTCCA	1																																																1
TTTCCC	1																																																1
TTTCTC	1																																																1
TTTGGG	1																																																1
TTTGGT	1																																																1
TTTGTG			1																																														1
TTTGTT	1																																																1
TTTTTC	1																																																1
TTTTTG	1																																																1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	25	18	19	13	8	12	11	11	7	4	4	5	3	3	4	1		3								1		1				153
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	1				1				1			3																		1	10
AC/GT	-	-	-	16	11	3	5	1	1	1		1																																					39
AG/CT	-	-	-	52	11	7	2	3	1	1			1						2	1		1																											82
AT/AT	-	-	-	36	23	9	9	4	5	1	3																																						90
CG/CG	-	-	-	1																																													1
AAC/GTT	-	-	16	9	8	2	8	3				1													1		1																						49
AAG/CTT	-	-	58	13	8	3	4	2								1	2																																91
AAT/ATT	-	-	15	2	5	1																																											23
ACC/GGT	-	-	25	11	6	2	4	1	3	1	2																																						55
ACG/CGT	-	-	10	7	3	1																																											21
ACT/AGT	-	-	7		2					1																2																							12
AGC/CTG	-	-	29	13	6	5	1		1																																								55
AGG/CCT	-	-	30	7	3	2	1		1																																								44
ATC/ATG	-	-	24	4	3	2	1	1																																									35
CCG/CGG	-	-	20	3	1	2	1																																										27
AAAC/GTTT	-	4	2																																														6
AAAG/CTTT	-	5	2																																														7
AAAT/ATTT	-	9	3							1			1								1																												15
AACC/GGTT	-	1																																															1
AACG/CGTT	-		1																																														1
AAGC/CTTG	-		1																																														1
AAGG/CCTT	-	12	8	2		1																																											23
AATC/ATTG	-		1																																														1
AATG/ATTC	-	2		1																																													3
AATT/AATT	-	3	1																																														4
ACAT/ATGT	-		1	2																																													3
ACCC/GGGT	-	1																																															1
ACGC/CGTG	-	1																																															1
ACGG/CCGT	-	4	1																																														5
ACTC/AGTG	-		1																																														1
ACTG/AGTC	-	1					1																																										2
AGAT/ATCT	-	1																																															1
AGGC/CCTG	-			1																																													1
AGGG/CCCT	-	1	1																																														2
ATCC/ATGG	-	7	2	1																																													10
ATGC/ATGC	-	1																																															1
CCCG/CGGG	-		1																																														1
CCGG/CCGG	-	1																																															1
AAAAC/GTTTT	4																																																4
AAAAG/CTTTT	11	1	1																																														13
AAAAT/ATTTT	12	2																																															14
AAACC/GGTTT	1																																																1
AAACG/CGTTT	1	1																																															2
AAAGC/CTTTG	1																																																1
AAAGG/CCTTT	8	1																																															9
AAATC/ATTTG	1																																																1
AAATG/ATTTC	3																																																3
AAATT/AATTT	2	1																																															3
AACAG/CTGTT	1																																																1
AACCC/GGGTT	2																																																2
AACCT/AGGTT	1																																																1
AAGAC/CTTGT	1		1																																														2
AAGAG/CTCTT	8																																																8
AAGAT/ATCTT	1																																																1
AAGCC/CTTGG	1																																																1
AAGCG/CGCTT	1																																																1
AAGGG/CCCTT	3																																																3
AAGTG/ACTTC	1		1																																														2
AATAC/ATTGT	3																																																3
AATAT/ATATT	3																																																3
AATCC/ATTGG	1																																																1
AATCG/ATTCG	3																																																3
AATCT/AGATT	7																																																7
AATGC/ATTGC	1																																																1
AATGG/ATTCC	1	1																																															2
AATGT/ACATT	8																																																8
AATTC/AATTG	1																																																1
ACACG/CGTGT	1																																																1
ACAGG/CCTGT	1																																																1
ACATC/ATGTG		1																																															1
ACATG/ATGTC	1	1																																															2
ACCCC/GGGGT	2		1																																														3
ACCCT/AGGGT	1			1																																													2
ACCGC/CGGTG	1																																																1
ACCGT/ACGGT	2																																																2
ACGCG/CGCGT	8																																																8
ACTAT/AGTAT	1																																																1
ACTCC/AGTGG	1																																																1
ACTCG/AGTCG	2																																																2
ACTGG/AGTCC	1		1																																														2
AGAGC/CTCTG	1																																																1
AGAGG/CCTCT	1																																																1
AGATC/ATCTG	1																																																1
AGATG/ATCTC	4	4																																															8
AGCAT/ATGCT	1																																																1
AGGAT/ATCCT	1																																																1
AGGGG/CCCCT	4	1																																															5
ATCCC/ATGGG	1																																																1
ATCCG/ATCGG	1																																																1
ATCGC/ATGCG	2																																																2
CCCCG/CGGGG	3																																																3
AAAAAC/GTTTTT	5	2		1																																													8
AAAAAG/CTTTTT	5	2																																															7
AAAAAT/ATTTTT	6																																																6
AAAACC/GGTTTT	2																																																2
AAAAGG/CCTTTT	7	1	1																																														9
AAAATC/ATTTTG	2																																																2
AAAATG/ATTTTC	1																																																1
AAACAC/GTGTTT			1																																														1
AAACCC/GGGTTT	6	2	1																																														9
AAACCG/CGGTTT	2																																																2
AAACTC/AGTTTG	1																																																1
AAAGAC/CTTTGT	1																																																1
AAAGAG/CTCTTT	3	2																																															5
AAAGAT/ATCTTT	1																																																1
AAAGCC/CTTTGG	2																																																2
AAAGGC/CCTTTG	2																																																2
AAAGGG/CCCTTT	6	1			1																																												8
AAAGGT/ACCTTT	1																																																1
AAATAT/ATATTT	1																																																1
AAATCT/AGATTT	2																																																2
AAATGG/ATTTCC	3																																																3
AAATGT/ACATTT	1																																																1
AAATTG/AATTTC	1																																																1
AACAAG/CTTGTT	2	1																																															3
AACACC/GGTGTT	1			1			2																																										4
AACACT/AGTGTT	1																																																1
AACAGC/CTGTTG	8	4							2																																								14
AACAGG/CCTGTT	1																																																1
AACATC/ATGTTG	2																																																2
AACATG/ATGTTC	1	1																																															2
AACATT/AATGTT	1																																																1
AACCAC/GGTTGT	2																																																2
AACCAG/CTGGTT	3																																																3
AACCCC/GGGGTT		1																																															1
AACCCG/CGGGTT	2	1																																															3
AACCTC/AGGTTG	1																																																1
AACCTG/AGGTTC	1		1																																														2
AACGAC/CGTTGT		1																																															1
AACGAG/CGTTCT	1																																																1
AACGAT/ATCGTT	1																																																1
AACGCC/CGTTGG	3																																																3
AACGGC/CCGTTG		1																																															1
AACGGT/ACCGTT	1																																																1
AACTCC/AGTTGG				1																																													1
AACTCT/AGAGTT	1																																																1
AACTGC/AGTTGC	1																																																1
AACTTC/AAGTTG	1																																																1
AAGACC/CTTGGT	1	1																																															2
AAGACG/CGTCTT	3		3		1																																												7
AAGAGC/CTCTTG	2	1																																															3
AAGAGG/CCTCTT	9	2	1		1																																												13
AAGATG/ATCTTC	8	3	1																																														12
AAGCAC/CTTGTG	4		1																																														5
AAGCAG/CTGCTT	6																																																6
AAGCCC/CTTGGG	1																																																1
AAGCCG/CGGCTT	1																																																1
AAGCGG/CCGCTT	3																																																3
AAGCTC/AGCTTG	3	1																																															4
AAGCTG/AGCTTC	2																																																2
AAGGAC/CCTTGT	1																																																1
AAGGAG/CCTTCT	5	1	1		1																																												8
AAGGAT/ATCCTT	2																																																2
AAGGCC/CCTTGG	1																																																1
AAGGGC/CCCTTG	5																																																5
AAGGGG/CCCCTT	4																																																4
AAGGTG/ACCTTC	1																																																1
AAGTCT/ACTTAG			1																																														1
AAGTGC/ACTTGC	1																																																1
AAGTGG/ACTTCC	1	1																																															2
AATACG/ATTCGT	1																																																1
AATACT/AGTATT		1																																															1
AATAGC/ATTGCT	2																																																2
AATCAG/ATTCTG	2																																																2
AATCCC/ATTGGG	3	1					2																																										6
AATCCG/ATTCGG	1																																																1
AATCGC/ATTGCG	1		1																																														2
AATCGG/ATTCCG	1																																																1
AATCTC/AGATTG		1																																															1
AATCTG/AGATTC	1																																																1
AATGAC/ATTGTC	1	1	1																																														3
AATGAT/ATCATT	1																																																1
AATGCG/ATTCGC		1																																															1
AATGCT/AGCATT	1																																																1
AATGGC/ATTGCC	1																																																1
AATGGG/ATTCCC	4			1																																													5
AATGTG/ACATTC		1																																															1
AATTAC/AATTGT	2																																																2
ACACCC/GGGTGT	1	2		1																																													4
ACACCG/CGGTGT		1																																															1
ACACGC/CGTGTG	1																																																1
ACACGG/CCGTGT		1																																															1
ACAGAG/CTCTGT	2	1																																															3
ACAGCC/CTGTGG	1	1																																															2
ACAGCG/CGCTGT	1																																																1
ACAGGC/CCTGTG	1																																																1
ACAGGG/CCCTGT	1																																																1
ACATAT/ATATGT	1																																																1
ACATCC/ATGTGG	1	1																																															2
ACATCG/ATGTCG	2		2																																														4
ACATCT/AGATGT	1	1	1																																														3
ACATGG/ATGTCC	1																																																1
ACCACT/AGTGGT	2																																																2
ACCAGC/CTGGTG	1	2		1																																													4
ACCATC/ATGGTG	2	1																																															3
ACCCAG/CTGGGT	2		1																																														3
ACCCAT/ATGGGT	5			1																																													6
ACCCCC/GGGGGT	1	1																																															2
ACCCGC/CGGGTG	2																																																2
ACCCGT/ACGGGT	1							2																																									3
ACCCTC/AGGGTG	2	1																																															3
ACCGCC/CGGTGG		1	1																																														2
ACCGCG/CGCGGT	1																																																1
ACCGCT/AGCGGT	1																																																1
ACCGGC/CCGGTG	3	1																																															4
ACCGGG/CCCGGT	3																																																3
ACCGGT/ACCGGT	1																																																1
ACCTCC/AGGTGG	6	3																																															9
ACCTGC/AGGTGC	2																																																2
ACGAGC/CGTGCT	1																																																1
ACGAGG/CCTCGT	5	1																																															6
ACGATG/ATCGTC	1																																																1
ACGCAG/CGTCTG	1		1																																														2
ACGCAT/ATGCGT		1																																															1
ACGCCC/CGTGGG	2		2																																														4
ACGCCG/CGGCGT	1	2																																															3
ACGCGC/CGCGTG		1																																															1
ACGCGG/CCGCGT	1																																																1
ACGCTC/AGCGTG					1																																												1
ACGGAG/CCGTCT		1																																															1
ACGGAT/ATCCGT		1																																															1
ACGGCC/CCGTGG		2																																															2
ACGGCG/CCGTCG	2																																																2
ACGGCT/AGCCGT	1																																																1
ACGGGC/CCCGTG	1																																																1
ACTATC/AGTGAT	1																																																1
ACTCCC/AGTGGG	1																																																1
ACTCCG/AGTCGG	1																																																1
ACTCGC/AGTGCG	1			1			1																																										3
ACTCGG/AGTCCG	1																																																1
ACTCTG/AGAGTC	2																																																2
ACTGAG/AGTCTC			1			1																																											2
ACTGAT/AGTATC	1																																																1
ACTGGC/AGTGCC				1																																													1
AGAGCC/CTCTGG	1	2																																															3
AGAGGC/CCTCTG	1																																																1
AGAGGG/CCCTCT	9	1	1	1	1																																												13
AGATCC/ATCTGG	1																																																1
AGATGG/ATCTCC	1	2																																															3
AGCAGG/CCTGCT	6					2							2																																				10
AGCATC/ATGCTG	3																																																3
AGCATG/ATGCTC	1																																																1
AGCCCC/CTGGGG	1	1			1																																												3
AGCCCG/CGGGCT	1																																																1
AGCCTC/AGGCTG	2																																																2
AGCCTG/AGGCTC	2	2		1																																													5
AGCGGG/CCCGCT	4		1																																														5
AGCTCC/AGCTGG	3	1																																															4
AGGATG/ATCCTC	6	1	1	1		1																																											10
AGGCCG/CCTCGG	2																																																2
AGGCGC/CCTGCG	2																																																2
AGGCGG/CCGCCT	3																																																3
AGGGCG/CCCTCG	1																																																1
AGGGGC/CCCCTG	2		1																																														3
AGGGGG/CCCCCT	16	3	1																																														20
ATATCC/ATATGG	1	1																																															2
ATCATG/ATCATG		1																																															1
ATCCCC/ATGGGG	4			3	2																																												9
ATCCCG/ATCGGG	1																																																1
ATCCGC/ATGCGG	2																																																2
ATCGCC/ATGGCG	2	1																																															3
ATCGCG/ATCGCG	1																																																1
ATCGGC/ATGCCG	1		1																																														2
ATGCCC/ATGGGC	3																																																3
CCCCCG/CGGGGG	7	2																																															9
CCCCGG/CCGGGG	1																																																1
CCCGCG/CGCGGG	2																																																2
CCCGGG/CCCGGG	1																																																1
