Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_001938505.1/fasta/hub_GCA_001938505.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              286547
Total size of examined sequences (bp):           95723708
Total number of identified SSRs:                 30396
Number of SSR containing sequences:              27893
Number of sequences containing more than 1 SSR:  2284
Number of SSRs present in compound formation:    1155


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	343
2	11902
3	8945
4	1400
5	6349
6	1457

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	125	59	14		198
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5	6	13	4	28
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5	5	2	4	16
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	70	28	3		101
AC	-	-	-	330	189	111	83	73	26													812
AG	-	-	-	56	37	23	22	11	8	3												160
AT	-	-	-	1846	1136	742	521	258	47													4550
CA	-	-	-	210	135	90	61	43	30													569
CG	-	-	-	43	8	5	3															59
CT	-	-	-	32	23	17	10	4	2	1												89
GA	-	-	-	32	22	15	7	9	4	4												93
GC	-	-	-	60	10	5																75
GT	-	-	-	163	109	66	41	37	22	1												439
TA	-	-	-	1826	1069	692	433	220	48													4288
TC	-	-	-	54	25	24	13	14	4	2												136
TG	-	-	-	266	148	96	55	51	15	1												632
AAC	-	-	33	15	7	3																58
AAG	-	-	16	4	4	1																25
AAT	-	-	973	444	139	2																1558
ACA	-	-	24	6	6	1																37
ACC	-	-	11	5	3	1																20
ACG	-	-	44	12	9	3																68
ACT	-	-	6	4	3	1																14
AGA	-	-	4	3	1	2																10
AGC	-	-	10	2		2																14
AGG	-	-	1	2																		3
AGT	-	-	1	4	3																	8
ATA	-	-	864	469	165	2																1500
ATC	-	-	16	5	5	1																27
ATG	-	-	14	6	4	1																25
ATT	-	-	589	283	126	3																1001
CAA	-	-	19	11	8	1																39
CAC	-	-	11	4	2	4																21
CAG	-	-	12	10	6																	28
CAT	-	-	10	4	3	2																19
CCA	-	-	20	6	2	1																29
CCG	-	-	35	16	1																	52
CCT	-	-	3																			3
CGA	-	-	36	14	5	2																57
CGC	-	-	34	14	2																	50
CGG	-	-	30	9	2	1																42
CGT	-	-	29	13	5																	47
CTA	-	-	10	6	2	2																20
CTC	-	-	1	1		1																3
CTG	-	-	8	2	1																	11
CTT	-	-	5	1	2	1																9
GAA	-	-	12	1	4																	17
GAC	-	-	34	15	5																	54
GAG	-	-	1			2																3
GAT	-	-	13	9	4	2																28
GCA	-	-	7	7	2																	16
GCC	-	-	28	10	1	1																40
GCG	-	-	31	13	3																	47
GCT	-	-	12	2																		14
GGC	-	-	25	12	3																	40
GGT	-	-	9	2	4	1																16
GTA	-	-	11	4	3																	18
GTC	-	-	39	18	7	3																67
GTG	-	-	7	3	1	1																12
GTT	-	-	9	5	5	2																21
TAA	-	-	498	267	109	3																877
TAC	-	-	17	7	6	1																31
TAG	-	-	7	6	5	1																19
TAT	-	-	948	485	171	2																1606
TCA	-	-	12	9	6																	27
TCC	-	-	3	1																		4
TCG	-	-	41	11	7	2																61
TCT	-	-	9	3	2	2																16
TGA	-	-	20	4	2	1																27
TGC	-	-	15	2	1																	18
TGG	-	-	5	5	1	1																12
TGT	-	-	19	5	7	1																32
TTA	-	-	565	285	88	4																942
TTC	-	-	14	7	6	1																28
TTG	-	-	40	5	9																	54
AAAC	-	14	1																			15
AAAG	-	2	1																			3
AAAT	-	144	22	4																		170
AACA	-	4	1																			5
AACT	-	1																				1
AAGA	-		1																			1
AATA	-	113	17	1																		131
AATC	-	1																				1
AATG	-	1																				1
AATT	-	27	5																			32
ACAA	-	3																				3
ACAG	-	3																				3
ACAT	-	3	1	2																		6
ACCG	-	4																				4
ACCT	-			1																		1
ACGC	-	4																				4
ACGG	-	2																				2
AGAA	-	1		1																		2
AGAC	-	1	1																			2
AGAT	-	1																				1
AGGC	-	1																				1
AGGT	-	3																				3
AGTA	-	1																				1
ATAA	-	64	10	2																		76
ATAC	-	8	4	1																		13
ATAG	-	4	2																			6
ATCA	-	4																				4
ATCT	-	1		1																		2
ATGA	-	1																				1
ATGC	-	1																				1
ATGT	-	2	5																			7
ATTA	-	25	2	1																		28
ATTC	-	2		1																		3
ATTG	-	2																				2
ATTT	-	82	14	3																		99
CAAA	-	3	2																			5
CAAC	-	1																				1
CAAT	-	1																				1
CACC	-	2																				2
CACG	-	4	2																			6
CACT	-	1																				1
CAGA	-	1	1																			2
CATA	-	6	3	3																		12
CATC	-	1																				1
CATT	-	1																				1
CCAC	-	3																				3
CCAT	-			1																		1
CCGA	-	2	1																			3
CCGG	-		1																			1
CCGT	-	1																				1
CCTA	-	3																				3
CCTT	-		1																			1
CGAC	-	1	1		1																	3
CGAT	-	1																				1
CGCA	-	2		1																		3
CGGA	-	2																				2
CGGT	-	4																				4
CGTC	-	2	1																			3
CGTG	-	1	1																			2
CTAC	-	3	3																			6
CTAT	-	4																				4
CTCA	-	2	1																			3
CTCG	-	1																				1
CTGA	-	1																				1
CTGG	-	1																				1
CTGT	-	1																				1
CTTT	-		2																			2
GAAA	-	1																				1
GACA	-	1	3																			4
GACC	-	2	1																			3
GACG	-	3																				3
GACT	-	3																				3
GAGC	-			1																		1
GATT	-		2																			2
GCAC	-	6																				6
GCCA	-		1																			1
GCCG	-	3																				3
GCGA	-	1																				1
GCGT	-	3	1																			4
GGAA	-			1																		1
GGAC	-	1																				1
GGCG	-	3																				3
GGTA	-	7																				7
GGTC	-	1																				1
GGTG	-	1																				1
GTAG	-	4																				4
GTAT	-	4	2	2																		8
GTCA	-	2																				2
GTCG	-		1																			1
GTCT	-	1																				1
GTGA	-	1																				1
GTGC	-	3	1																			4
GTTC	-	1																				1
GTTT	-	3	1																			4
TAAA	-	59	9	2																		70
TAAC	-	1	1																			2
TAAT	-	28	2																			30
TACA	-	5	2																			7
TACC	-	17	2																			19
TACG	-	1																				1
TACT	-	1	1																			2
TAGA	-	1	1																			2
TAGG	-	6	4																			10
TATC	-	5																				5
TATG	-	13	1	2																		16
TATT	-	116	22	4																		142
TCAA	-	2																				2
TCAC	-	1	1																			2
TCAG	-		1																			1
TCAT	-	1																				1
TCCG	-	2		1																		3
TCGA	-	1																				1
TCGC	-	1																				1
TCTA	-	1		1																		2
TCTG	-	3																				3
TCTT	-	1	2																			3
TGGC	-	1																				1
TGTA	-	2	2	2																		6
TGTC	-	3																				3
TGTT	-	1	1																			2
TTAA	-	28																				28
TTAC	-		1																			1
TTAT	-	113	12																			125
TTCA	-	1																				1
TTCT	-	1																				1
TTGA	-	2																				2
TTGT	-		1																			1
TTTA	-	93	11																			104
TTTC	-	5																				5
TTTG	-	5		1																		6
AAAAC	32	2																				34
AAAAG	9																					9
AAAAT	331	8																				339
AAACA	12	2																				14
AAACC	1																					1
AAACG	2																					2
AAACT	4	1																				5
AAAGA	2																					2
AAAGT	2	1																				3
AAATA	168	11	1																			180
AAATC	3																					3
AAATG	7																					7
AAATT	110	6	2																			118
AACAA	7																					7
AACAC	1																					1
AACAG	1																					1
AACAT	2	1																				3
AACCG	1																					1
AACCT	40	12																				52
AACGT	1																					1
AAGAA	2																					2
AAGAT	2																					2
AAGGG	1																					1
AAGTA	1																					1
AAGTG	2																					2
AAGTT	2																					2
AATAA	198	5																				203
AATAC	6	2																				8
AATAG	4																					4
AATAT	249	5	1																			255
AATCA	4																					4
AATCG	1																					1
AATGA	1																					1
AATGG	1																					1
AATGT	2																					2
AATTA	44	3																				47
AATTC	4																					4
AATTG	3																					3
AATTT	99	6	1																			106
ACAAA	16																					16
ACAAG	1																					1
ACAAT	4																					4
ACACA	1	1																				2
ACACT	1																					1
ACATA	1																					1
ACATC	1																					1
ACATG	2																					2
ACATT	2																					2
ACCAA	1																					1
ACCAT		1																				1
ACCCC	2																					2
ACCGG	1																					1
ACCTA	57	7																				64
ACCTG	1																					1
ACCTT	1																					1
ACGTT	1																					1
ACTAT	4																					4
ACTCA	2																					2
AGAAA	3																					3
AGAAT	1																					1
AGAGA	1																					1
AGATA	3		1																			4
AGATT	2																					2
AGCAA	1																					1
AGCAG	1																					1
AGCTG	1																					1
AGGGG	2																					2
AGGTT	42	10																				52
AGTAA	1																					1
AGTAT	7																					7
AGTCT	1																					1
AGTGT	1																					1
AGTTA	2																					2
AGTTT	1																					1
ATAAA	114	7	2																			123
ATAAC	3																					3
ATAAG	1																					1
ATAAT	282	16	1																			299
ATACA	8																					8
ATACC	2																					2
ATACT	2																					2
ATAGT	3																					3
ATATA	327	13	1																			341
ATATC	9																					9
ATATG	1																					1
ATATT	234	18	2																			254
ATCAA	1																					1
ATCAC	1																					1
ATCAT	6	1																				7
ATCCA	1																					1
ATCGT	1																					1
ATCTA	3																					3
ATGAA	2																					2
ATGAG	1																					1
ATGAT	3																					3
ATGCA	1																					1
ATGGT	1																					1
ATGTA	1																					1
ATGTG	1																					1
ATGTT	3																					3
ATTAA	60	6	1																			67
ATTAC	8	1																				9
ATTAG	3																					3
ATTAT	208	8	2																			218
ATTCA	1																					1
ATTCC	1																					1
ATTGA	1																					1
ATTGT	7																					7
ATTTA	62	4																				66
ATTTC	5																					5
ATTTG	8																					8
ATTTT	158	9																				167
CAAAA	10																					10
CAAAC	2																					2
CAAAT	3																					3
CAACA	1																					1
CAACC	1																					1
CAATA	4																					4
CAATT	3																					3
CACAC	3																					3
CACCG	1																					1
CACGG	1																					1
CACTC	1	1																				2
CATAA	1																					1
CATAT	1	1																				2
CATCA	2																					2
CATCT	1																					1
CATTA	2																					2
CATTC		1																				1
CATTG	1																					1
CATTT	1																					1
CCAAA	2																					2
CCACA	1																					1
CCACC	1																					1
CCAGT	1																					1
CCATA	1																					1
CCATC	1																					1
CCCCA	1																					1
CCCCT	2																					2
CCGAA	1																					1
CCGCC	1																					1
CCTAA	20	2	1																			23
CCTAT	1																					1
CGACC	1																					1
CGACG	2																					2
CGAGA	2																					2
CGATT	1																					1
CGCCA	1																					1
CGCCC	1																					1
CGCCG	1																					1
CGCGC	1																					1
CGGCG	2																					2
CGGTG	1																					1
CGTAT	1																					1
CGTCA	1																					1
CGTGC	1																					1
CGTTT	1																					1
CTAAA	2																					2
CTAAC	39	10																				49
CTAAT	1																					1
CTACA		1																				1
CTACT			1																			1
CTATA	2																					2
CTATC	1																					1
CTATG	1																					1
CTATT	1	1																				2
CTCCT		1																				1
CTTAA	3																					3
CTTAC	2																					2
CTTGT	1																					1
CTTTG	1																					1
CTTTT	8																					8
GAAAA	3																					3
GAAAC	2																					2
GAAAT	1																					1
GAACA	1																					1
GAATA	2																					2
GACGA	2																					2
GACGC	1																					1
GAGCG	1																					1
GAGTA	1																					1
GATAA	1																					1
GATAT	5	1	1																			7
GATCA	1																					1
GATCG		1																				1
GATTA	1																					1
GATTC	1																					1
GATTG	1																					1
GCACA	1																					1
GCACC	1																					1
GCACG	1																					1
GCAGC	1																					1
GCATA	1																					1
GCCCA	1																					1
GCGCC	1																					1
GCGGG	1																					1
GCGTT	1																					1
GGAAG		1																				1
GGCGC	2																					2
GGGAG	1																					1
GGGGA	1																					1
GGGGT		1																				1
GGGTG	1																					1
GGTAG	1																					1
GGTGA	2																					2
GGTTA	39	8																				47
GGTTC	1																					1
GTAAA	1																					1
GTAAT	2																					2
GTATA	5	1																				6
GTATC	1																					1
GTATG	1																					1
GTATT	3																					3
GTCAT	1																					1
GTCCG	1																					1
GTCGA	1																					1
GTGGT	1																					1
GTGTC	1																					1
GTGTG	3																					3
GTGTT	1																					1
GTTAA	3																					3
GTTAG	20	5																				25
GTTAT	1																					1
GTTTC	1																					1
GTTTG	1																					1
GTTTT	14	3																				17
TAAAA	147	3																				150
TAAAC	3																					3
TAAAG	1																					1
TAAAT	62	1																				63
TAACC	75	13	1																			89
TAAGA	2																					2
TAATA	153	10																				163
TAATC	2																					2
TAATG	2																					2
TAATT	69	1																				70
TACAA	5																					5
TACAG	1																					1
TACAT	3																					3
TACCA	1																					1
TACGT		1																				1
TACTA	5																					5
TACTC	1																					1
TACTG		1																				1
TACTT	1																					1
TAGAT	1																					1
TAGGT	65	16																				81
TAGTA	3																					3
TATAA	176	10	1																			187
TATAC	4																					4
TATAG	4	1																				5
TATAT	364	19																				383
TATCA	2																					2
TATCC	1																					1
TATCG	2																					2
TATGA	2																					2
TATGG	1																					1
TATGT	4																					4
TATTA	190	13	1																			204
TATTC	2																					2
TATTG	8																					8
TATTT	219	3																				222
TCAAA	4																					4
TCAAT	2																					2
TCACG	1																					1
TCATA	5																					5
TCATC	1																					1
TCATT	2																					2
TCCAA	1																					1
TCCAT	1																					1
TCCCC	1																					1
TCGAA	1																					1
TCGAG	1																					1
TCGGA	1																					1
TCGTG	2																					2
TCGTT	1																					1
TCTAA		1																				1
TCTAT	4	1																				5
TCTCA	1																					1
TCTTA	1																					1
TCTTC	1																					1
TCTTT	5																					5
TGAAA	4																					4
TGAAG	2																					2
TGATA	4																					4
TGATT	3																					3
TGCAC	1																					1
TGCAT	1																					1
TGCTC	1																					1
TGGAA	1																					1
TGGAG	1																					1
TGGCA	1																					1
TGGGA	1																					1
TGGTA	1																					1
TGGTG	1																					1
TGTAA	1																					1
TGTAC	1																					1
TGTAT	6																					6
TGTCG	1																					1
TGTGT	1																					1
TGTTA	1																					1
TGTTT	7																					7
TTAAA	86	5																				91
TTAAC	2																					2
TTAAG	1																					1
TTAAT	52	5																				57
TTACA	1																					1
TTACG	1																					1
TTACT	1																					1
TTAGG	21	8																				29
TTAGT	3																					3
TTATA	150	4	1																			155
TTATC	5																					5
TTATG	4	1																				5
TTATT	159	12																				171
TTCAA	3																					3
TTCAC	1																					1
TTCAG	1																					1
TTCAT	2																					2
TTCGA	2																					2
TTCTT	3																					3
TTGAA	6	1																				7
TTGAG	1																					1
TTGAT	1																					1
TTGCA	1																					1
TTGGT		1																				1
TTGTA	1																					1
TTGTG	1																					1
TTGTT	12	1																				13
TTTAA	74	3																				77
TTTAC	3																					3
TTTAG	3																					3
TTTAT	145	5																				150
TTTCA	1																					1
TTTCC	1																					1
TTTCG	1																					1
TTTCT	3																					3
TTTGA	2																					2
TTTGG	2																					2
TTTGT	9																					9
TTTTA	154	7																				161
TTTTC	10	3																				13
TTTTG	26																					26
AAAAAC	4																					4
AAAAAG	4																					4
AAAAAT	98	2																				100
AAAACA	2																					2
AAAACC	1																					1
AAAACG	1																					1
AAAACT	2																					2
AAAATA	39	1																				40
AAAATG	3																					3
AAAATT	17																					17
AAACAA	1																					1
AAACAC	1																					1
AAAGAA	4																					4
AAAGAG		1																				1
AAAGGA	1																					1
AAATAA	34	2																				36
AAATAC	1																					1
AAATAT	10																					10
AAATCA	1																					1
AAATCC	1																					1
AAATGA	3																					3
AAATTA	10																					10
AAATTG	1																					1
AAATTT	7																					7
AACAAA	2																					2
AACAAT	1																					1
AACAGC	1																					1
AACATA	1																					1
AACATT	1																					1
AACGAC		1																				1
AACGAT	1																					1
AACTAA	1																					1
AACTAC	1																					1
AAGGTA	1																					1
AAGTGG	1																					1
AATAAA	37	1																				38
AATAAC	2	1																				3
AATACA		1																				1
AATACC	1																					1
AATAGT	2																					2
AATATA	15																					15
AATATC	1																					1
AATATG	1																					1
AATATT	7																					7
AATCAA	1																					1
AATCAC	1																					1
AATCCA	1																					1
AATCTC	1																					1
AATCTT	1																					1
AATGAA	2																					2
AATGAC	1																					1
AATGAT	1																					1
AATGGA	1																					1
AATGTA	1																					1
AATGTT	1																					1
AATTAA	9																					9
AATTAC	1																					1
AATTAT	10																					10
AATTCA	1	1																				2
AATTCT	2																					2
AATTGA	1																					1
AATTGT	2																					2
AATTTA	7																					7
AATTTC	2																					2
AATTTT	16																					16
ACAAAA	6	2																				8
ACAAAC	1																					1
ACAAAT	1																					1
ACAACG	1																					1
ACAATA	1																					1
ACACAT	1																					1
ACACCC	2																					2
ACACGC	1																					1
ACACTT	2																					2
ACAGAC	1																					1
ACATAC	1																					1
ACATAT	1																					1
ACATCT	1																					1
ACATTT	2																					2
ACCATC	1																					1
ACGACA	1																					1
ACGACC	1																					1
ACGCAA	1																					1
ACGCAC	1	1																				2
ACGGGC	1																					1
ACTAAA	1																					1
ACTACA	1																					1
ACTCAC	1																					1
AGACGG	1																					1
AGAGAC	1																					1
AGATAA	1	1																				2
AGATAT	1																					1
AGATTT	1																					1
AGCAAC	1																					1
AGCAGT	1																					1
AGTAAT	1																					1
ATAAAA	28	1																				29
ATAAAT	11																					11
ATAACA	2																					2
ATAATT	18																					18
ATACAC	2																					2
ATACAT	2																					2
ATACCT	2																					2
ATACGA	1																					1
ATAGAG	1																					1
ATAGTA	2																					2
ATAGTT	1																					1
ATATAA	8																					8
ATATAC	4	1																				5
ATATAG	7																					7
ATATCC	1																					1
ATATGC	1																					1
ATATGT		1																				1
ATATTA	6																					6
ATATTG	3																					3
ATATTT	6																					6
ATCAAA	2																					2
ATCACC	1																					1
ATCCTA	1																					1
ATCGTC	1																					1
ATGAAA	1																					1
ATGAAG	1																					1
ATGACG	1																					1
ATGATA	1																					1
ATGCAA	2																					2
ATGGCC	1																					1
ATGGTA	1																					1
ATGTAC	1																					1
ATGTAT	2																					2
ATGTGT	1																					1
ATGTTT	1																					1
ATTAAA	10																					10
ATTAAT	4																					4
ATTACT	1																					1
ATTAGA	1																					1
ATTAGT	1																					1
ATTATA	12																					12
ATTATC	2																					2
ATTATG	2																					2
ATTCAA	1																					1
ATTGAA	1																					1
ATTGAT	1																					1
ATTGTT	2																					2
ATTTAA	18																					18
ATTTAC	1																					1
ATTTAT	4	1																				5
ATTTTA	16																					16
ATTTTC	2																					2
ATTTTG	2																					2
ATTTTT	63	3																				66
CAAAAA	1																					1
CAAACA	1																					1
CAAATA		1																				1
CAACAG	2																					2
CAAGAG	1																					1
CAATAA	2																					2
CACACG	1																					1
CACAGC	1																					1
CACATA	1																					1
CACCAG	1																					1
CACCAT	1																					1
CACCGC	2																					2
CACGAA		1																				1
CAGCAA	4																					4
CAGCAC	1	1																				2
CATAAT	2																					2
CATACA		1																				1
CATATA	3																					3
CATGGG	1																					1
CATTCT	1																					1
CCACCC	1																					1
CCACCG	2																					2
CCACTT		1																				1
CCAGTG	1																					1
CCATCA		1																				1
CCGAGT	1																					1
CCGCCA		1																				1
CCGCCT	1																					1
CCGCTG	1																					1
CCTATT	1																					1
CGAAAC	1																					1
CGAACG	1																					1
CGAAGG	1																					1
CGACGC	2																					2
CGATGA	1																					1
CGCCAC	1																					1
CGCCTG	1																					1
CGGCGT	1																					1
CGGGGG	1																					1
CGGTCG	1																					1
CGGTTT	1																					1
CGTAAA	1																					1
CGTCAT	1																					1
CGTCGC	1																					1
CGTCTT	1																					1
CGTGTG	1																					1
CGTTCA	1																					1
CTATAG	1																					1
CTATTA	2																					2
CTATTT	2																					2
CTCATA	1																					1
CTCCAC	2																					2
CTCGCA	1																					1
CTCTCA	1																					1
CTGTCT	1																					1
CTTACA	1																					1
CTTTTT	1																					1
GAAAAA	4																					4
GAAATA	1																					1
GAAATC	1																					1
GAAGAT	1																					1
GACAAC		1																				1
GACAAT	1																					1
GACAGA	1																					1
GACATG	1																					1
GACCTC	1																					1
GACGAT		1																				1
GAGGAC	1																					1
GATATC	1																					1
GATATT	1																					1
GATCGA	1																					1
GATGAC	1																					1
GATTTT	1																					1
GCAACA	1																					1
GCACAC	1																					1
GCAGCT	1																					1
GCAGGA	1																					1
GCCACC	2																					2
GCCACG	1																					1
GCCGAC	1																					1
GCCGCA	1																					1
GCCTCT	1																					1
GCCTTC	1																					1
GCGGGG	1																					1
GCGTGT	1																					1
GCTGCG		1																				1
GCTTTG	1																					1
GGAACC	1																					1
GGAATC	1																					1
GGATGA	1																					1
GGCACC	1																					1
GGCAGA	2																					2
GGCGGA	1																					1
GGCGGT	3																					3
GGCTGC	2																					2
GGGGAG	1																					1
GGGGTG	1																					1
GGTACG	1																					1
GGTATA	1																					1
GGTGAC	1																					1
GGTGGC	1																					1
GGTTCA	1																					1
GGTTCT	1																					1
GTAATA	1																					1
GTAATG	1																					1
GTACAT		1																				1
GTAGTT	1																					1
GTATAT	1																					1
GTATTA	1																					1
GTCAAA	1																					1
GTCATA	1																					1
GTCATT	1																					1
GTCGAT		1																				1
GTCGCT	1																					1
GTCGTA	1																					1
GTCTCT	1																					1
GTCTTG	1																					1
GTGCGT	1																					1
GTGCTG		1																				1
GTGGCC	1																					1
GTGGTA	1																					1
GTGTGA	1																					1
GTGTGC	1																					1
GTTATT	1																					1
GTTCAC	1																					1
GTTGTC	1																					1
GTTTTT	3																					3
TAAAAA	28	1																				29
TAAAAT	13																					13
TAAATA	12																					12
TAAATC	1																					1
TAAATG	1																					1
TAAATT	6																					6
TAACTA	1																					1
TAATAC	1																					1
TAATAG	1																					1
TAATAT	9																					9
TAATCA	1																					1
TAATTA	5																					5
TAATTT	5																					5
TACAAT	1																					1
TACTAT	1																					1
TACTTT	1																					1
TAGATT	1																					1
TAGGTA	1																					1
TAGTAA	2																					2
TATAAA	7																					7
TATAAC	1																					1
TATAAT	8																					8
TATACA	1																					1
TATACC	2																					2
TATAGG	1																					1
TATATG	2																					2
TATATT	8																					8
TATCAC	2																					2
TATCAT	2																					2
TATGTA	3																					3
TATGTG	4																					4
TATGTT	1																					1
TATTAA	7																					7
TATTAC	1																					1
TATTAG	2																					2
TATTCA	1																					1
TATTGA	1																					1
TATTGC	1																					1
TATTGT	1																					1
TATTTA	8																					8
TATTTC	1																					1
TATTTG	1																					1
TATTTT	56																					56
TCAAAA	1																					1
TCAAAT	1																					1
TCACAT	1																					1
TCACCA		1																				1
TCACGT	1																					1
TCATAA	1																					1
TCATAG	1																					1
TCATAT	2																					2
TCATGG			1																			1
TCATTA	2																					2
TCATTT	2																					2
TCCACG	1																					1
TCCGGA	1																					1
TCCTAC	1																					1
TCGTCA	2																					2
TCTAAA	1																					1
TCTTCC	1																					1
TCTTTT	2																					2
TGAAAA	4																					4
TGAAAC	1																					1
TGAAAT	1																					1
TGAATT	1																					1
TGAGAA	1																					1
TGATAG	1																					1
TGATCG	1																					1
TGATGG	1																					1
TGCAAC	1																					1
TGCAGC	1																					1
TGCAGT	1																					1
TGCGTG	1																					1
TGGTGA	1																					1
TGGTTG	1																					1
TGTATA	2	1																				3
TGTATT	1																					1
TGTCTT	1																					1
TGTGAA	1																					1
TGTGCG	1																					1
TGTGTA	1																					1
TGTTAT	1																					1
TGTTGC	2																					2
TGTTTT	4																					4
TTAAAA	12	1																				13
TTAAAT	7																					7
TTAATA	5																					5
TTAATT	9																					9
TTACAA	1																					1
TTACGC	1																					1
TTAGAA	1																					1
TTATAA	10																					10
TTATAT	7																					7
TTATCA	1																					1
TTATCT	1																					1
TTATGT	1																					1
TTATTG	1																					1
TTATTT	37																					37
TTCAAA	2																					2
TTCACG	1																					1
TTCATA	1																					1
TTCCAT	1																					1
TTCTTG	2																					2
TTCTTT	3																					3
TTGAAA	1																					1
TTGAAT	2																					2
TTGATT	1																					1
TTGCAG	1																					1
TTGCTG	1																					1
TTGTAA	1																					1
TTGTTA	1																					1
TTTAAA	17																					17
TTTAAT	19																					19
TTTACA	1																					1
TTTAGT	1																					1
TTTATA	3																					3
TTTATG	1																					1
TTTATT	46	4																				50
TTTCAA	2																					2
TTTCAT	1																					1
TTTCTG	1																					1
TTTCTT	1																					1
TTTGAA	1																					1
TTTGAC	1																					1
TTTGGT	1																					1
TTTGTA	1																					1
TTTGTT	2																					2
TTTTAA	21																					21
TTTTAG	1																					1
TTTTAT	35																					35
TTTTCA	2																					2
TTTTCT	1																					1
TTTTGT	6	1																				7
TTTTTA	30	1																				31
TTTTTC	1																					1
TTTTTG	5	1																				6

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	195	87	17		299
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	10	11	15	8	44
AC/GT	-	-	-	969	581	363	240	204	93	2												2452
AG/CT	-	-	-	174	107	79	52	38	18	10												478
AT/AT	-	-	-	3672	2205	1434	954	478	95													8838
CG/CG	-	-	-	103	18	10	3															134
AAC/GTT	-	-	144	47	42	8																241
AAG/CTT	-	-	60	19	19	7																105
AAT/ATT	-	-	4437	2233	798	16																7484
ACC/GGT	-	-	63	25	13	9																110
ACG/CGT	-	-	223	83	38	10																354
ACT/AGT	-	-	52	31	22	5																110
AGC/CTG	-	-	64	25	10	2																101
AGG/CCT	-	-	9	4		3																16
ATC/ATG	-	-	85	37	24	7																153
CCG/CGG	-	-	183	74	12	2																271
AAAC/GTTT	-	33	7	1																		41
AAAG/CTTT	-	11	6	1																		18
AAAT/ATTT	-	784	117	16																		917
AACC/GGTT	-	1																				1
AACG/CGTT	-	1																				1
AACT/AGTT	-	2	1																			3
AAGG/CCTT	-		1	1																		2
AAGT/ACTT	-	2	2																			4
AATC/ATTG	-	12	2																			14
AATG/ATTC	-	7		1																		8
AATT/AATT	-	108	9	1																		118
ACAG/CTGT	-	14	5																			19
ACAT/ATGT	-	43	20	12																		75
ACCC/GGGT	-	6																				6
ACCG/CGGT	-	14	4		1																	19
ACCT/AGGT	-	43	9	1																		53
ACGC/CGTG	-	23	5	1																		29
ACGG/CCGT	-	13	1	1																		15
ACGT/ACGT	-	1																				1
ACTC/AGTG	-	5	2																			7
ACTG/AGTC	-	6	1																			7
AGAT/ATCT	-	17	3	2																		22
AGCC/CTGG	-	2	1																			3
AGCG/CGCT	-	3		1																		4
AGGC/CCTG	-	1																				1
ATCC/ATGG	-	1		1																		2
ATCG/ATCG	-	2																				2
ATGC/ATGC	-	1																				1
CCCG/CGGG	-	3																				3
CCGG/CCGG	-	3	1																			4
AAAAC/GTTTT	145	8																				153
AAAAG/CTTTT	48	3																				51
AAAAT/ATTTT	1793	70	3																			1866
AAACC/GGTTT	9	1																				10
AAACG/CGTTT	8																					8
AAACT/AGTTT	16	1																				17
AAAGC/CTTTG	2																					2
AAAGG/CCTTT	1																					1
AAAGT/ACTTT	11	1																				12
AAATC/ATTTG	29																					29
AAATG/ATTTC	26																					26
AAATT/AATTT	718	40	4																			762
AACAC/GTGTT	6	1																				7
AACAG/CTGTT	2																					2
AACAT/ATGTT	20	2																				22
AACCC/GGGTT	1																					1
AACCG/CGGTT	3																					3
AACCT/AGGTT	418	91	2																			511
AACGC/CGTTG	1																					1
AACGT/ACGTT	3	1																				4
AACTC/AGTTG	3																					3
AACTG/AGTTC	1																					1
AACTT/AAGTT	13																					13
AAGAC/CTTGT	2																					2
AAGAG/CTCTT	2																					2
AAGAT/ATCTT	15		1																			16
AAGGG/CCCTT	1	1																				2
AAGGT/ACCTT	3																					3
AAGTG/ACTTC	5																					5
AATAC/ATTGT	52	2																				54
AATAG/ATTCT	14	2																				16
AATAT/ATATT	2333	116	10																			2459
AATCC/ATTGG	3																					3
AATCG/ATTCG	6																					6
AATCT/AGATT	13	1																				14
AATGC/ATTGC	4																					4
AATGG/ATTCC	4	1																				5
AATGT/ACATT	24	1																				25
AATTC/AATTG	23	1																				24
ACACC/GGTGT	9																					9
ACACG/CGTGT	4																					4
ACACT/AGTGT	2	1																				3
ACAGC/CTGTG	1																					1
ACAGT/ACTGT	2	1																				3
ACATC/ATGTG	5																					5
ACATG/ATGTC	3																					3
ACCAT/ATGGT	8	1																				9
ACCCC/GGGGT	5	1																				6
ACCCG/CGGGT	1																					1
ACCCT/AGGGT	1																					1
ACCGC/CGGTG	3																					3
ACCGG/CCGGT	2																					2
ACCTC/AGGTG	2																					2
ACCTG/AGGTC	1																					1
ACGAG/CGTCT	4																					4
ACGAT/ATCGT	5																					5
ACGCC/CGTGG	1																					1
ACGCG/CGCGT	3																					3
ACGGC/CCGTG	3																					3
ACGTC/ACGTG	2																					2
ACTAG/AGTCT	1																					1
ACTAT/AGTAT	39	2																				41
ACTCC/AGTGG	2	1																				3
ACTCG/AGTCG	2																					2
ACTCT/AGAGT	2		1																			3
ACTGC/AGTGC	1																					1
ACTGG/AGTCC	1																					1
AGAGC/CTCTG	2																					2
AGAGG/CCTCT		1																				1
AGATC/ATCTG	1																					1
AGATG/ATCTC	4																					4
AGCAT/ATGCT	2																					2
AGCCC/CTGGG	1																					1
AGCGC/CGCTG	1																					1
AGCGG/CCGCT	1																					1
AGCTC/AGCTG	1																					1
AGGAT/ATCCT	3																					3
AGGGG/CCCCT	7																					7
ATATC/ATATG	38	3	1																			42
ATCCC/ATGGG	2																					2
ATCCG/ATCGG	1	1																				2
ATGCC/ATGGC	1																					1
CCCCG/CGGGG	3																					3
CCGCG/CGCGG	7																					7
AAAAAC/GTTTTT	36	4																				40
AAAAAG/CTTTTT	21																					21
AAAAAT/ATTTTT	531	16																				547
AAAACC/GGTTTT	2																					2
AAAACG/CGTTTT	1																					1
AAAACT/AGTTTT	6																					6
AAAAGG/CCTTTT	1																					1
AAAAGT/ACTTTT	1																					1
AAAATC/ATTTTG	9																					9
AAAATG/ATTTTC	20																					20
AAAATT/AATTTT	157	1																				158
AAACAC/GTGTTT	3																					3
AAACAG/CTGTTT	1																					1
AAACAT/ATGTTT	5																					5
AAACCG/CGGTTT	2																					2
AAACGC/CGTTTG	1																					1
AAACGT/ACGTTT	1																					1
AAACTG/AGTTTC	1																					1
AAAGAC/CTTTGT	1																					1
AAAGAG/CTCTTT		1																				1
AAAGAT/ATCTTT	2	1																				3
AAAGCC/CTTTGG	1																					1
AAAGGT/ACCTTT	1																					1
AAAGTC/ACTTTG	2																					2
AAATAC/ATTTGT	5	2																				7
AAATAG/ATTTCT	4																					4
AAATAT/ATATTT	99	1																				100
AAATCC/ATTTGG	2																					2
AAATCG/ATTTCG	1																					1
AAATCT/AGATTT	4																					4
AAATGC/ATTTGC	2																					2
AAATGG/ATTTCC	2																					2
AAATGT/ACATTT	6																					6
AAATTC/AATTTG	9	1																				10
AAATTG/AATTTC	9																					9
AAATTT/AAATTT	62																					62
AACAAG/CTTGTT	2																					2
AACAAT/ATTGTT	15	1																				16
AACACG/CGTGTT		1																				1
AACAGC/CTGTTG	12																					12
AACATT/AATGTT	2																					2
AACCAC/GGTTGT	1																					1
AACCAG/CTGGTT	1																					1
AACCGG/CCGGTT	1																					1
AACCTG/AGGTTC	1																					1
AACGAC/CGTTGT	3	2																				5
AACGAT/ATCGTT	1																					1
AACGCG/CGCGTT	1																					1
AACGTG/ACGTTC	4																					4
AACTAC/AGTTGT	3																					3
AACTAT/AGTTAT	3																					3
AACTGC/AGTTGC	3																					3
AAGACC/CTTGGT	1																					1
AAGACG/CGTCTT	1																					1
AAGAGC/CTCTTG	1																					1
AAGAGG/CCTCTT	1																					1
AAGATG/ATCTTC	2																					2
AAGATT/AATCTT	1																					1
AAGCGT/ACGCTT	1																					1
AAGGCG/CCTTCG	2																					2
AAGTGG/ACTTCC	1	1																				2
AAGTGT/ACACTT	3																					3
AATACC/ATTGGT	1																					1
AATACG/ATTCGT	1																					1
AATACT/AGTATT	5																					5
AATAGC/ATTGCT	1																					1
AATAGG/ATTCCT	1																					1
AATAGT/ACTATT	14																					14
AATATC/ATATTG	7																					7
AATATG/ATATTC	5																					5
AATATT/AATATT	38																					38
AATCAC/ATTGTG	1																					1
AATCAT/ATGATT	6																					6
AATCCT/AGGATT	1																					1
AATCGG/ATTCCG	1																					1
AATCTC/AGATTG	1																					1
AATGAC/ATTGTC	3																					3
AATGAG/ATTCTC	2																					2
AATGAT/ATCATT	9																					9
AATGGT/ACCATT	2																					2
AATGTG/ACATTC	2																					2
AATTAC/AATTGT	6																					6
AATTAG/AATTCT	4																					4
AATTAT/AATTAT	63																					63
ACACAG/CTGTGT	1																					1
ACACAT/ATGTGT	11	1																				12
ACACCC/GGGTGT	2																					2
ACACGC/CGTGTG	10	1																				11
ACACTC/AGTGTG	2																					2
ACAGAG/CTCTGT	4																					4
ACAGCC/CTGTGG	1																					1
ACAGCG/CGCTGT	1																					1
ACATAT/ATATGT	21	3																				24
ACATCG/ATGTCG		1																				1
ACATCT/AGATGT	1																					1
ACATGG/ATGTCC	1																					1
ACATGT/ACATGT	1	1																				2
ACCACG/CGTGGT	1																					1
ACCACT/AGTGGT	1																					1
ACCAGC/CTGGTG	2	2																				4
ACCATC/ATGGTG	5	2																				7
ACCATG/ATGGTC			1																			1
ACCCCC/GGGGGT	2																					2
ACCCGT/ACGGGT	1																					1
ACCGCC/CGGTGG	11	1																				12
ACCGCG/CGCGGT	1																					1
ACCGGC/CCGGTG	1																					1
ACCGTC/ACGGTG	1																					1
ACCTAT/AGGTAT	7																					7
ACCTCC/AGGTGG	2																					2
ACCTCG/AGGTCG	1																					1
ACGACT/AGTCGT	1																					1
ACGAGG/CCTCGT	1																					1
ACGATC/ATCGTG	1																					1
ACGATG/ATCGTC	7	1																				8
ACGCCG/CGGCGT	4																					4
ACGGAG/CCGTCT	1																					1
ACGGCC/CCGTGG	2																					2
ACGGCG/CCGTCG	1																					1
ACGGGC/CCCGTG	1																					1
ACGTCC/ACGTGG	1																					1
ACTATC/AGTGAT	3																					3
ACTATG/AGTCAT	2																					2
ACTCAT/AGTATG	1																					1
ACTCCT/AGGAGT	1																					1
ACTCGC/AGTGCG	1																					1
ACTCGG/AGTCCG	1																					1
ACTCTC/AGAGTG	1																					1
ACTGCT/AGCAGT	1																					1
ACTGGC/AGTGCC	1																					1
AGAGAT/ATCTCT	1																					1
AGAGGC/CCTCTG	3																					3
AGATAT/ATATCT	8																					8
AGATCG/ATCTCG	1																					1
AGCAGG/CCTGCT	1																					1
AGCCGC/CGGCTG	3	1																				4
AGCGGC/CCGCTG	1																					1
AGCTAT/AGCTAT	1																					1
AGCTGC/AGCTGC	2																					2
AGGATG/ATCCTC	1																					1
AGGCGC/CCTGCG	1																					1
AGGCGG/CCGCCT	2																					2
AGGGGG/CCCCCT	1																					1
ATATCC/ATATGG	1																					1
ATATCG/ATATCG	1																					1
ATATGC/ATATGC	1																					1
ATCCGG/ATCCGG	1																					1
ATGCCC/ATGGGC	1																					1
ATGGCC/ATGGCC	1																					1
CCCCCG/CGGGGG	2																					2
