Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_001880385.1/fasta/hub_GCA_001880385.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              56587
Total size of examined sequences (bp):           58566570
Total number of identified SSRs:                 331
Number of SSR containing sequences:              328
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	55
4	20
5	152
6	99

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AG	-	-	-	1		1
AT	-	-	-	1		1
CT	-	-	-	1	1	2
TA	-	-	-	1		1
AAG	-	-	6	1		7
AAT	-	-	1			1
AGA	-	-	2			2
ATT	-	-	4		1	5
CAG	-	-	1			1
CCA	-	-	1			1
CCT	-	-	2			2
CTC	-	-	1			1
CTT	-	-	4			4
GAA	-	-	5			5
GAG	-	-	2			2
GAT	-	-	4			4
GGC	-	-	1			1
GTG	-	-	1			1
TAA	-	-	1			1
TAT	-	-	1			1
TCA	-	-	2			2
TCC	-	-	2			2
TCT	-	-		1		1
TGA	-	-	2	1	1	4
TTA	-	-	4			4
TTC	-	-	1		1	2
TTG	-	-	1			1
AAAG	-	1				1
AAAT	-	2	1			3
AATA	-	1				1
AATT	-	1		1		2
ATAA	-	1	1	1		3
ATGG	-	1				1
ATTA	-	1				1
CATT	-			1		1
GAGG	-	1				1
GGAA	-	1				1
GGGT	-	1				1
TTAA	-	1				1
TTAT	-	1				1
TTTA	-	1				1
TTTC	-	1				1
AAAAG	2					2
AAAAT	10					10
AAACT	1					1
AAATA	7					7
AAATT	1					1
AACCC	1					1
AAGAA	2					2
AAGGA	2					2
AATAA	3					3
AATAT	1					1
AATTA	3					3
AATTC	1					1
AATTT	4					4
ACAAG	1					1
ACATA	1					1
ACCAG	1					1
ACCCT	1					1
ACTCA	1					1
AGAAA	2					2
AGAAG	1					1
AGAGA	1					1
AGAGG	1					1
AGATT	1					1
AGCAA	1					1
ATAAA	5					5
ATATA	1					1
ATCCT	1					1
ATCTC	2					2
ATGAA	1					1
ATGAG	1					1
ATTAT	2					2
ATTTC	1					1
ATTTG	1					1
ATTTT	9					9
CAAAT	1					1
CCAAG	1					1
CCCAA	1					1
CCCTT	1					1
CCTCC	2					2
CCTTC	1					1
CCTTT	1					1
CTACT	1					1
CTCAA	2					2
CTCCC	2					2
CTTTT	1					1
GAAAA	1					1
GAAAG	1					1
GAAAT	1					1
GAATC	1					1
GAGAG	2					2
GATAG	1					1
GATTT	1					1
GCTCA		1				1
GGAAG	1					1
GGTTT	1					1
GTCTT	1					1
GTGAA	1					1
GTGGG	1					1
TAAAA	2					2
TAAAT	1					1
TAATA	1					1
TAATT		1				1
TACAA	1					1
TAGAA	1					1
TATAA	1					1
TATTT	4					4
TCAAA	2					2
TCCTC	1					1
TCTTC	1					1
TGATT	1					1
TGCTC	1					1
TGGGG	1					1
TTAAA	1					1
TTAAG	1					1
TTAAT	1					1
TTATT	2					2
TTCCA	1					1
TTCCC	1					1
TTCCT	1					1
TTCTC	2					2
TTCTT	2					2
TTGAT	1					1
TTTAA	3					3
TTTAT	1					1
TTTCT	4					4
TTTGA	1					1
TTTGT	1					1
TTTTA	5					5
TTTTC	3					3
AAAAGG	1					1
AAAATA	2					2
AAATCA	1					1
AAGAAA	1					1
AAGAGT	1					1
AAGCTC	1					1
AATAAA	1					1
AGAGCA	1					1
AGAGGA	1					1
AGCTCT	1					1
AGGAAG	1					1
AGGTTG	1					1
ATAAAG	1					1
ATCACC	1					1
ATCGTC	1					1
ATTTGA	1					1
ATTTTC	1					1
ATTTTT	2					2
CAAATC		1				1
CAAGAG	1					1
CAAGTC	1	1				2
CAGAAC	1					1
CATTGG	1					1
CCACCT	1					1
CCCAAA	2					2
CCTCCA	1					1
CCTCTT	1					1
CCTTTC	1					1
CTCTTC	1					1
CTGCTC	1					1
CTTAGA	1					1
CTTCCT	1					1
CTTGTC	1					1
CTTTTT	1					1
GAAAAC	1					1
GAAATA	1					1
GAAGCT	1					1
GAAGGA	1					1
GAAGGT	1					1
GACTCC	1					1
GAGGCT		1				1
GAGGGA	1					1
GATGAA	1					1
GATGGA	1					1
GCAAGT	1					1
GCCTCT	1					1
GCTATC	1					1
GCTCAG		1				1
GCTGGG	1					1
GCTTCG	1					1
GCTTTT	1					1
GGAAGA	2					2
GGACCT	1					1
GGATCA	1					1
GGGAAG	1					1
GGGTTT	1	1				2
GGTAGA	1					1
GGTTGA	1					1
GTTCTT	1					1
TAAAAA	1					1
TCAAAA	2					2
TCAATT	1					1
TCAGCC	1					1
TCCAAA	1					1
TCCCCA		1				1
TCTTCA	1					1
TCTTTA	1					1
TCTTTC	3					3
TGAAAT	1					1
TGAAGC	1					1
TGAAGG	2					2
TGATAG	1					1
TGCTGA		1				1
TGGGTT	1					1
TTAAGA	1					1
TTACCC	1					1
TTATTT	2					2
TTCAGG	1					1
TTCTCC	1					1
TTGTTC	1					1
TTTAGA	1					1
TTTATT	1					1
TTTGAT	1					1
TTTGGG	2		1			3
TTTTAG	1					1
TTTTGA		1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AG/CT	-	-	-	2	1	3
AT/AT	-	-	-	2		2
AAC/GTT	-	-	1			1
AAG/CTT	-	-	18	2	1	21
AAT/ATT	-	-	11		1	12
ACC/GGT	-	-	2			2
AGC/CTG	-	-	1			1
AGG/CCT	-	-	7			7
ATC/ATG	-	-	8	1	1	10
CCG/CGG	-	-	1			1
AAAG/CTTT	-	2				2
AAAT/ATTT	-	6	2	1		9
AAGG/CCTT	-	1				1
AATG/ATTC	-			1		1
AATT/AATT	-	3		1		4
ACCC/GGGT	-	1				1
AGGG/CCCT	-	1				1
ATCC/ATGG	-	1				1
AAAAC/GTTTT	1					1
AAAAG/CTTTT	17					17
AAAAT/ATTTT	48					48
AAACC/GGTTT	1					1
AAACT/AGTTT	1					1
AAAGC/CTTTG	1					1
AAAGG/CCTTT	5					5
AAATC/ATTTG	8					8
AAATG/ATTTC	3					3
AAATT/AATTT	14	1				15
AACAT/ATGTT	1					1
AACCC/GGGTT	2					2
AACTC/AGTTG	3					3
AACTT/AAGTT	1					1
AAGAC/CTTGT	2					2
AAGAG/CTCTT	5					5
AAGCC/CTTGG	1					1
AAGGG/CCCTT	4					4
AAGTG/ACTTC	1					1
AATAC/ATTGT	1					1
AATAG/ATTCT	1					1
AATAT/ATATT	6					6
AATCG/ATTCG	1					1
AATCT/AGATT	1					1
AATGG/ATTCC	1					1
AATTC/AATTG	1					1
ACCAG/CTGGT	1					1
ACCCC/GGGGT	2					2
ACCCT/AGGGT	1					1
ACTCT/AGAGT	1					1
AGAGC/CTCTG	1					1
AGAGG/CCTCT	4					4
AGATG/ATCTC	3					3
AGCTC/AGCTG		1				1
AGGAT/ATCCT	2					2
AGGGG/CCCCT	4					4
AAAAAG/CTTTTT	2					2
AAAAAT/ATTTTT	9					9
AAAACG/CGTTTT	1					1
AAAACT/AGTTTT	1					1
AAAAGC/CTTTTG	1					1
AAAAGG/CCTTTT	1					1
AAAATC/ATTTTG	4	1				5
AAAATG/ATTTTC	1					1
AAACCC/GGGTTT	6	1	1			8
AAAGAG/CTCTTT	3					3
AAAGAT/ATCTTT	2					2
AAAGGG/CCCTTT	1					1
AAATAG/ATTTCT	1					1
AAATCC/ATTTGG	1	1				2
AAATCT/AGATTT	1					1
AAATTC/AATTTG	1					1
AAATTG/AATTTC	2					2
AACAAG/CTTGTT	2					2
AACCAG/CTGGTT	1					1
AACCTC/AGGTTG	2					2
AACCTG/AGGTTC	1					1
AAGAGC/CTCTTG	2					2
AAGAGG/CCTCTT	7					7
AAGAGT/ACTCTT	1					1
AAGATG/ATCTTC	2					2
AAGATT/AATCTT	1					1
AAGCCG/CGGCTT	1					1
AAGCTC/AGCTTG	1					1
AAGCTG/AGCTTC	2					2
AAGGAC/CCTTGT	1					1
AAGGAG/CCTTCT	2					2
AAGGGG/CCCCTT	1					1
AAGGGT/ACCCTT	1					1
AAGGTG/ACCTTC	3					3
AAGTCC/ACTTGG	1	1				2
AAGTCT/ACTTAG	1					1
AAGTGC/ACTTGC	1					1
AATGCC/ATTGGC	1					1
ACCATC/ATGGTG	1					1
ACCTCC/AGGTGG	2					2
ACCTCT/AGAGGT	1					1
ACCTGG/AGGTCC	1					1
ACGATG/ATCGTC	1					1
ACTATC/AGTGAT	1					1
ACTCCG/AGTCGG	1					1
AGAGCT/AGCTCT	1					1
AGAGGC/CCTCTG	1					1
AGAGGG/CCCTCT	1					1
AGATGG/ATCTCC	1					1
AGCAGG/CCTGCT	1					1
AGCATC/ATGCTG		1				1
AGCCCC/CTGGGG	1					1
AGCCTC/AGGCTG	1	1				2
AGCCTG/AGGCTC		1				1
AGCGAT/ATCGCT	1					1
AGGATC/ATCCTG	1					1
ATCCCC/ATGGGG		1				1
