Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_001861305.1/fasta/hub_GCA_001861305.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              875
Total size of examined sequences (bp):           30157280
Total number of identified SSRs:                 87712
Number of SSR containing sequences:              812
Number of sequences containing more than 1 SSR:  774
Number of SSRs present in compound formation:    37244


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	13760
2	49812
3	8153
4	6739
5	6495
6	2753

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	169	170	171	172	173	174	175	176	177	178	179	180	181	182	183	184	185	186	187	188	189	190	191	192	193	194	195	196	197	198	199	200	201	202	203	204	205	206	207	208	209	210	211	212	213	214	215	216	217	218	219	220	221	222	223	224	225	226	227	228	229	230	231	232	233	234	235	236	237	238	239	240	241	242	243	244	245	246	247	248	249	250	251	252	253	254	255	256	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	880	745	694	666	550	497	489	447	352	305	240	177	165	139	136	122	92	67	48	40	17	12	11	13	7	6	4	6	1	1		2	1		1				1							1				2	2									1			1							1																1			1																																																											1																																																1																																									1	6947
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	807	754	711	621	559	510	461	473	359	298	238	161	146	138	140	105	100	63	49	28	28	19	8	3	10	5	1	1	2	1	1	1		1	1	1	1	1																				1					1								1														1						1																							1																																																																	1																																																											6813
AC	-	-	-	43	19	16	2	4	1	1																																																																																																																																																																																																																																																					86
AG	-	-	-	8	6	1	1	1		2		1	1																																																																																																																																																																																																																																																		21
AT	-	-	-	4861	3039	2487	2320	2115	2075	1986	1949	1713	1683	1327	1156	923	810	636	487	421	280	172	101	85	50	28	30	14	5	6	5	2	2	1	1			2				1																																																																																																																																																																																																																					30773
CA	-	-	-	52	5	4	1		1																																																																																																																																																																																																																																																						63
CT	-	-	-	4	3		1																																																																																																																																																																																																																																																								8
GA	-	-	-	3	2																																																																																																																																																																																																																																																										5
GC	-	-	-	1																																																																																																																																																																																																																																																											1
GT	-	-	-	12	6	4	1	2																																																																																																																																																																																																																																																							25
TA	-	-	-	3686	2377	1753	1508	1320	1172	1174	1028	926	815	714	561	401	347	306	202	150	102	57	36	25	16	11	9	2	4	3	1	3	1	1	1	2			1																																																																																																																																																																																																																								18715
TC	-	-	-	10	4	4	1																																																																																																																																																																																																																																																								19
TG	-	-	-	57	19	8	5	3	2	1		1																																																																																																																																																																																																																																																			96
AAC	-	-	27	9	9	6	4	2	1	1				1																																																																																																																																																																																																																																																	60
AAG	-	-	20	4	5	4	3	1			1																																																																																																																																																																																																																																																				38
AAT	-	-	474	286	211	192	115	91	46	28	17	10	5	5	3	1									1																																																																																																																																																																																																																																						1485
ACA	-	-	6	2	3	1	2			1				1											1																																																																																																																																																																																																																																						17
ACC	-	-	1	3																																																																																																																																																																																																																																																											4
ACG	-	-	2																																																																																																																																																																																																																																																												2
ACT	-	-	8	4	6		1																																																																																																																																																																																																																																																								19
AGA	-	-	11	6	2		1																																																																																																																																																																																																																																																								20
AGG	-	-	1	1																																																																																																																																																																																																																																																											2
AGT	-	-	8	2	4	1		1					1																																																																																																																																																																																																																																																		17
ATA	-	-	501	265	180	116	80	53	39	30	18	11	6	5	4	2	2	1		2	1	1																																																																																																																																																																																																																																									1317
ATC	-	-	48	29	8	4				1					1																																																																																																																																																																																																																																																91
ATG	-	-	58	17	8	6	2	1	4		1	1												1						1																																																																																																																																																																																																																																	100
ATT	-	-	394	254	170	104	82	48	34	18	15	7	7	2	3	1	2	3		1	1																																																																																																																																																																																																																																										1146
CAA	-	-	5	3	2	3	1	1			1	1																							1																																																																																																																																																																																																																												18
CAC	-	-			1																																																																																																																																																																																																																																																										1
CAT	-	-	22	11	6		1	3	1																																																																																																																																																																																																																																																						44
CCA	-	-	3		2																																																																																																																																																																																																																																																										5
CCT	-	-	1																																																																																																																																																																																																																																																												1
CTA	-	-	10	3				1																																																																																																																																																																																																																																																							14
CTC	-	-				2																																																																																																																																																																																																																																																									2
CTT	-	-	7	9	3		1	1	2																																																																																																																																																																																																																																																						23
GAA	-	-	37	15	3	5	1	7	1																																																																																																																																																																																																																																																						69
GAC	-	-		1																																																																																																																																																																																																																																																											1
GAG	-	-	2		2	2		1																																																																																																																																																																																																																																																							7
GAT	-	-	68	18	7	5	4	1																																																																																																																																																																																																																																																							103
GGA	-	-	1		1																																																																																																																																																																																																																																																										2
GGT	-	-	1	1																																																																																																																																																																																																																																																											2
GTA	-	-	20	7	5	1		1	1																																																																																																																																																																																																																																																						35
GTG	-	-	3																																																																																																																																																																																																																																																												3
GTT	-	-	6	3	3	1			1	1	1				1												1																																																																																																																																																																																																																																				18
TAA	-	-	213	124	106	77	40	50	17	12	11	7	3	2	1	1	1		1	1																																																																																																																																																																																																																																											667
TAC	-	-	42	11	3				1					2																													1																																																																																																																																																																																																																				60
TAG	-	-	17	10	3	4	2	1			2	1							1												1																																																																																																																																																																																																																																42
TAT	-	-	500	276	227	143	94	74	38	22	19	9	4	3		1	2	2				1	1																																																																																																																																																																																																																																								1416
TCA	-	-	35	12	6	5	2	1																																																																																																																																																																																																																																																							61
TCC	-	-	4	2	1	1																																																																																																																																																																																																																																																									8
TCG	-	-	2																																																																																																																																																																																																																																																												2
TCT	-	-	24	16	5	6	2				1																																																																																																																																																																																																																																																				54
TGA	-	-	17	9	4	2	1		1																																																																																																																																																																																																																																																						34
TGG	-	-	1																																																																																																																																																																																																																																																												1
TGT	-	-	13	6	4	4	3	2	1	1									2																																																																																																																																																																																																																																												36
TTA	-	-	377	168	121	99	69	42	32	16	21	8	2	4		2	1	1																1																																																																																																																																																																																																																													964
TTC	-	-	47	17	7	3	1	3																																																																																																																																																																																																																																																							78
TTG	-	-	27	15	5	3	2	5	4	2												1																																																																																																																																																																																																																																									64
AAAC	-	20	3	6	3	1				1													1																																																																																																																																																																																																																																								35
AAAG	-	13	6	6	5	1																																																																																																																																																																																																																																																									31
AAAT	-	458	249	156	86	32	14	11	2	2	1		1																																																																																																																																																																																																																																																		1012
AACA	-	4																																																																																																																																																																																																																																																													4
AAGA	-	4	3	2	2																																																																																																																																																																																																																																																										11
AAGG	-	1																																																																																																																																																																																																																																																													1
AAGT	-			1																																																																																																																																																																																																																																																											1
AATA	-	335	201	100	46	16	18	10		1	1	2	1																																																																																																																																																																																																																																																		731
AATC	-	1	1	1																																																																																																																																																																																																																																																											3
AATG	-	4	3																																																																																																																																																																																																																																																												7
AATT	-	4	2	1																																																																																																																																																																																																																																																											7
ACAA	-	1																																																																																																																																																																																																																																																													1
ACAT	-	26	10	8	5	1	1	4			1	1	1			1										1																1																																	1																																																																																																																																																																																				62
ACTT	-	1																																																																																																																																																																																																																																																													1
AGAA	-	7	2	2	2																																																																																																																																																																																																																																																										13
AGAT	-	1																																																																																																																																																																																																																																																													1
AGTA	-	3	1																																																																																																																																																																																																																																																												4
ATAA	-	524	232	84	52	24	6	3	3	1																																																																																																																																																																																																																																																					929
ATAC	-	66	42	15	2	5	1	3		2	3	1	1			1																																											1																																																																																																																																																																																																				143
ATCT	-	1																																																																																																																																																																																																																																																													1
ATGA	-	4		1																																																																																																																																																																																																																																																											5
ATGT	-	21	7			1	1	1			1																																																																																																																																																																																																																																																				32
ATTA	-	4	4	1																																																																																																																																																																																																																																																											9
ATTC	-	2	2	2		3																																																																																																																																																																																																																																																									9
ATTT	-	251	149	87	25	21	6	3	1		1																																																																																																																																																																																																																																																				544
CAAA	-	2	2	1	1	1																																																																																																																																																																																																																																																									7
CAAT	-	1	1	2																																																																																																																																																																																																																																																											4
CATA	-	22	5	2	1	5	1																																																																																																																																																																																																																																																								36
CATC	-			1																																																																																																																																																																																																																																																											1
CCTT	-	1																																																																																																																																																																																																																																																													1
CTTA	-	1																																																																																																																																																																																																																																																													1
CTTT	-	1		2		1			1																																																																																																																																																																																																																																																						5
GAAA	-	10	3		1					1						1																																																																																																																																																																																																																																															16
GAAG	-	1																																																																																																																																																																																																																																																													1
GAAT	-		2																																																																																																																																																																																																																																																												2
GATA	-	1																																																																																																																																																																																																																																																													1
GCTA	-	1																																																																																																																																																																																																																																																													1
GTAT	-	26	9	3			1													1								1																																					1																																																																																																																																																																																														42
GTTT	-	4																													1																																																																																																																																																																																																																																5
TAAA	-	171	79	27	22	6	3		1																																																																																																																																																																																																																																																						309
TAAC	-	1																																																																																																																																																																																																																																																													1
TAAT	-	13	3																																																																																																																																																																																																																																																												16
TACA	-	10	17	3	1	2													1			1	2									1						1			1																																																																																																																																																																																																																						40
TAGA	-	1																																																																																																																																																																																																																																																													1
TAGT	-	2																																																																																																																																																																																																																																																													2
TATC	-	4																																																																																																																																																																																																																																																													4
TATG	-	68	24	9	7	4	1	1	1		1					2													1			2								1																																																																																																																																																																																																																							122
TATT	-	583	235	136	54	25	13	9	2	1	1			1																																																																																																																																																																																																																																																	1060
TCAT	-	1																																																																																																																																																																																																																																																													1
TCCA	-	1																																																																																																																																																																																																																																																													1
TCTT	-	2	1			1	1	1																																																																																																																																																																																																																																																							6
TGAA	-			1																																																																																																																																																																																																																																																											1
TGCA	-	1																																																																																																																																																																																																																																																													1
TGTA	-	13	13	7	4		4	2		1							1																																																																																																																																																																																																																																														45
TGTT	-	4	1																																																																																																																																																																																																																																																												5
TTAA	-	8	2		1																																																																																																																																																																																																																																																										11
TTAT	-	305	131	83	37	20	12	5	3				1				1																																																																																																																																																																																																																																														598
TTCA	-	1	1	2																																																																																																																																																																																																																																																											4
TTCC	-	1																																																																																																																																																																																																																																																													1
TTCT	-	6	5	1	1																																																																																																																																																																																																																																																										13
TTGC	-	1																																																																																																																																																																																																																																																													1
TTGT	-	2																																																																																																																																																																																																																																																													2
TTTA	-	375	155	81	59	22	8	2	2	1	1		1																																																																																																																																																																																																																																																		707
TTTC	-	22	9	4	1	1																																																																																																																																																																																																																																																									37
TTTG	-	15	4	9		1		1																																																																																																																																																																																																																																																							30
AAAAC	45	10	2	2	2																																																																																																																																																																																																																																																										61
AAAAG	68	16	9	2	1																																																																																																																																																																																																																																																										96
AAAAT	511	183	78	32	10	6	2		1					1																																																																																																																																																																																																																																																	824
AAACA	6		1																																																																																																																																																																																																																																																												7
AAAGA	14	1	2			1																																																																																																																																																																																																																																																									18
AAAGC	1																																																																																																																																																																																																																																																														1
AAAGG	3			2																																																																																																																																																																																																																																																											5
AAATA	173	64	33	9	2					1				1																																																																																																																																																																																																																																																	283
AAATC	2																																																																																																																																																																																																																																																														2
AAATG	14	2	2																																																																																																																																																																																																																																																												18
AAATT	14	7	3																																																																																																																																																																																																																																																												24
AACAA	4	4		2																																																																																																																																																																																																																																																											10
AACAC	1																																																																																																																																																																																																																																																														1
AACAG	2																																																																																																																																																																																																																																																														2
AACAT	1																																																																																																																																																																																																																																																														1
AAGAA	11	2	3			1																																																																																																																																																																																																																																																									17
AAGAG	1																																																																																																																																																																																																																																																														1
AAGAT	1																																																																																																																																																																																																																																																														1
AAGGA	1																																																																																																																																																																																																																																																														1
AATAA	204	45	15	5	3																																																																																																																																																																																																																																																										272
AATAC	6	4			1																																																																																																																																																																																																																																																										11
AATAG	1	1	1																																																																																																																																																																																																																																																												3
AATAT	108	32	17	3	3		2		1		3		1							1						1			1																																																																																																																																																																																																																																		173
AATGA	2																																																																																																																																																																																																																																																														2
AATGG	32	2	1	1																																																																																																																																																																																																																																																											36
AATTA	7	4		1																																																																																																																																																																																																																																																											12
AATTC		2																																																																																																																																																																																																																																																													2
AATTG	1	2																																																																																																																																																																																																																																																													3
AATTT	5																																																																																																																																																																																																																																																														5
ACAAA	9		1																																																																																																																																																																																																																																																												10
ACAAC	1																																																																																																																																																																																																																																																														1
ACAAT		2																																																																																																																																																																																																																																																													2
AGAAA	18	3	1	1																																																																																																																																																																																																																																																											23
AGAAC	1																																																																																																																																																																																																																																																														1
AGAAG	2																																																																																																																																																																																																																																																														2
AGAAT	3																																																																																																																																																																																																																																																														3
AGGAA	1	1																																																																																																																																																																																																																																																													2
AGGGA	1																																																																																																																																																																																																																																																														1
AGTAT	1																																																																																																																																																																																																																																																														1
ATAAA	107	39	8	4	2	1																																																																																																																																																																																																																																																									161
ATAAC	1																																																																																																																																																																																																																																																														1
ATAAG					1																																																																																																																																																																																																																																																										1
ATAAT	85	18	13	4	3	1		1			1	1																									1																																																																																																																																																																																																																										128
ATACA	2																																																																																																																																																																																																																																																														2
ATACT	1																																																																																																																																																																																																																																																														1
ATAGA		1																																																																																																																																																																																																																																																													1
ATATA	440	77	17	11	10	4	1	1	3		1	3		1		2			1			1								1				1	1																																																																																																																																																																																																																												576
ATATC	3	1																																																																																																																																																																																																																																																													4
ATATG	9	2		1																																																																																																																																																																																																																																																											12
ATATT	55	19	5	4	3	1	2			1		1			1			1																																																																																																																																																																																																																																													93
ATCAA			1																																																																																																																																																																																																																																																												1
ATCAT	2	1		1																																																																																																																																																																																																																																																											4
ATCTA	1																																																																																																																																																																																																																																																														1
ATCTT	1																																																																																																																																																																																																																																																														1
ATGAA	3	1																																																																																																																																																																																																																																																													4
ATGAG	1																																																																																																																																																																																																																																																														1
ATGAT	1																																																																																																																																																																																																																																																														1
ATGTG	1																																																																																																																																																																																																																																																														1
ATGTT	2																																																																																																																																																																																																																																																														2
ATTAA	6	3																																																																																																																																																																																																																																																													9
ATTAT	57	18	7	4	2		1	1	1					2	1						1																																																																																																																																																																																																																																										95
ATTGT			1																																																																																																																																																																																																																																																												1
ATTTA	10	2	1	1																																																																																																																																																																																																																																																											14
ATTTC	16	4	2																																																																																																																																																																																																																																																												22
ATTTG	1	1		1																																																																																																																																																																																																																																																											3
ATTTT	132	40	28	7	3																																																																																																																																																																																																																																																										210
CAAAA	4	1																																																																																																																																																																																																																																																													5
CAAAC	1																																																																																																																																																																																																																																																														1
CAAAT	1																																																																																																																																																																																																																																																														1
CAAGA		1																																																																																																																																																																																																																																																													1
CAATA		2																																																																																																																																																																																																																																																													2
CACCA	2																																																																																																																																																																																																																																																														2
CATAA	9																																																																																																																																																																																																																																																														9
CATCA	11																																																																																																																																																																																																																																																														11
CATTA	2																																																																																																																																																																																																																																																														2
CATTC	1																																																																																																																																																																																																																																																														1
CATTT	2																																																																																																																																																																																																																																																														2
CCACA	7																																																																																																																																																																																																																																																														7
CCTTC	1																																																																																																																																																																																																																																																														1
CCTTT			1																																																																																																																																																																																																																																																												1
CTATT	1																																																																																																																																																																																																																																																														1
CTTAA	4																																																																																																																																																																																																																																																														4
CTTTC	5			1																																																																																																																																																																																																																																																											6
CTTTT	24	2	1																																																																																																																																																																																																																																																												27
GAAAA	35	5	4	2																																																																																																																																																																																																																																																											46
GAAAG	2																																																																																																																																																																																																																																																														2
GAAAT	11	1																																																																																																																																																																																																																																																													12
GAACT	1																																																																																																																																																																																																																																																														1
GAATA	1																																																																																																																																																																																																																																																														1
GAATG	66	16	20			1			1																																																																																																																																																																																																																																																						104
GAATT		1																																																																																																																																																																																																																																																													1
GATAT	3	1																																																																																																																																																																																																																																																													4
GATTT	1																																																																																																																																																																																																																																																														1
GCCAA	1																																																																																																																																																																																																																																																														1
GGAAA	3																																																																																																																																																																																																																																																														3
GGAAT	12	19																																																																																																																																																																																																																																																													31
GTATA	1																																																																																																																																																																																																																																																														1
GTATT	1																																																																																																																																																																																																																																																														1
GTTTG		1																																																																																																																																																																																																																																																													1
GTTTT	2		2																																																																																																																																																																																																																																																												4
TAAAA	90	41	14	2		1		1																																																																																																																																																																																																																																																							149
TAAAG	1																																																																																																																																																																																																																																																														1
TAAAT	20	3	1																																																																																																																																																																																																																																																												24
TAAGT	3	3																																																																																																																																																																																																																																																													6
TAATA	44	15	2	2	6					1																																																																																																																																																																																																																																																					70
TAATT	5	2																																																																																																																																																																																																																																																													7
TACAT	1																																																																																																																																																																																																																																																														1
TATAA	58	16	4	2														1				1																																																																																																																																																																																																																																									82
TATAC	1																																																																																																																																																																																																																																																														1
TATAT	370	61	16	9	1	1	1			1	1	1																																																																																																																																																																																																																																																			462
TATCT	1			1																																																																																																																																																																																																																																																											2
TATGA		1																																																																																																																																																																																																																																																													1
TATGT	2																																																																																																																																																																																																																																																														2
TATTA	95	36	14	3	1	3	1		1		1	1		1						1																																																																																																																																																																																																																																											158
TATTC	2																																																																																																																																																																																																																																																														2
TATTG	3	1			1																																																																																																																																																																																																																																																										5
TATTT	147	51	19	7	4		1				1																																																																																																																																																																																																																																																				230
TCAAA	2																																																																																																																																																																																																																																																														2
TCAAT			1																																																																																																																																																																																																																																																												1
TCATG		1																																																																																																																																																																																																																																																													1
TCCAT	1																																																																																																																																																																																																																																																														1
TCTCT	1																																																																																																																																																																																																																																																														1
TCTTA	1																																																																																																																																																																																																																																																														1
TCTTT	9	1	1																																																																																																																																																																																																																																																												11
TGAAA	2																																																																																																																																																																																																																																																														2
TGATA	1	2				1																																																																																																																																																																																																																																																									4
TGATG	15																																																																																																																																																																																																																																																														15
TGGAA	18	1	9	4																																																																																																																																																																																																																																																											32
TGTAT		2																																																																																																																																																																																																																																																													2
TGTGT		1																																																																																																																																																																																																																																																													1
TGTTA				1																																																																																																																																																																																																																																																											1
TGTTC		1																																																																																																																																																																																																																																																													1
TGTTT	5	3	1		1																																																																																																																																																																																																																																																										10
TTAAA	5	1	1																																																																																																																																																																																																																																																												7
TTAAT	11	1	1																																																																																																																																																																																																																																																												13
TTAGG	1																																																																																																																																																																																																																																																														1
TTATA	80	28	7		2	2	1					1		1					1																																																																																																																																																																																																																																												123
TTATC	1																																																																																																																																																																																																																																																														1
TTATG	1																																																																																																																																																																																																																																																														1
TTATT	226	90	30	11	4	1																																																																																																																																																																																																																																																									362
TTCAC	1																																																																																																																																																																																																																																																														1
TTCCT	1																																																																																																																																																																																																																																																														1
TTCTA	1	1																																																																																																																																																																																																																																																													2
TTCTC	1																																																																																																																																																																																																																																																														1
TTCTT	19	4	1				1																																																																																																																																																																																																																																																								25
TTGAT	1	1																																																																																																																																																																																																																																																													2
TTGTA	3	1																																																																																																																																																																																																																																																													4
TTGTT	7	4	2		1																																																																																																																																																																																																																																																										14
TTTAA	9	1	2																																																																																																																																																																																																																																																												12
TTTAT	238	100	19	8	7		1		1			1																																																																																																																																																																																																																																																			375
TTTCA	6	3	1																																																																																																																																																																																																																																																												10
TTTCC	5					1																																																																																																																																																																																																																																																									6
TTTCT	20	4	5	3																																																																																																																																																																																																																																																											32
TTTGA	3	1																																																																																																																																																																																																																																																													4
TTTGC	2																																																																																																																																																																																																																																																														2
TTTGT	10	3			1																																																																																																																																																																																																																																																										14
TTTTA	311	102	45	6	1	2							1																																																																																																																																																																																																																																																		468
TTTTC	86	14	7	3																																																																																																																																																																																																																																																											110
TTTTG	19	6	3		1																																																																																																																																																																																																																																																										29
AAAAAC	9	1	3																																																																																																																																																																																																																																																												13
AAAAAG	38	12	2	1			1																																																																																																																																																																																																																																																								54
AAAAAT	120	33	6	1		1	1																																																																																																																																																																																																																																																								162
AAAACA	2		1	1																																																																																																																																																																																																																																																											4
AAAAGA	19	6																																																																																																																																																																																																																																																													25
AAAAGG	2																																																																																																																																																																																																																																																														2
AAAAGT	1																																																																																																																																																																																																																																																														1
AAAATA	37	12		1																																																																																																																																																																																																																																																											50
AAAATG	10	1	1																																																																																																																																																																																																																																																												12
AAAATT	11	2																																																																																																																																																																																																																																																													13
AAACAA	1	1	1																																																																																																																																																																																																																																																												3
AAACAC		2																																																																																																																																																																																																																																																													2
AAACAT	3		3			1																																																																																																																																																																																																																																																									7
AAAGAA	12	5																																																																																																																																																																																																																																																													17
AAAGAC	1																																																																																																																																																																																																																																																														1
AAAGAG	2			1																																																																																																																																																																																																																																																											3
AAAGAT	6																																																																																																																																																																																																																																																														6
AAAGGA		1																																																																																																																																																																																																																																																													1
AAAGGG	1																																																																																																																																																																																																																																																														1
AAAGTA		1																																																																																																																																																																																																																																																													1
AAATAA	37	4	1	1																																																																																																																																																																																																																																																											43
AAATAC	2	1																																																																																																																																																																																																																																																													3
AAATAG	1	1	1																																																																																																																																																																																																																																																												3
AAATAT	58	13	6	1	1																																																																																																																																																																																																																																																										79
AAATCA		1																																																																																																																																																																																																																																																													1
AAATGA	2																																																																																																																																																																																																																																																														2
AAATGC	1																																																																																																																																																																																																																																																														1
AAATGG				1																																																																																																																																																																																																																																																											1
AAATGT	1																																																																																																																																																																																																																																																														1
AAATTA	2																																																																																																																																																																																																																																																														2
AAATTT	2																																																																																																																																																																																																																																																														2
AACAAA	2																																																																																																																																																																																																																																																														2
AACAAT	2																																																																																																																																																																																																																																																														2
AACATA		3																																																																																																																																																																																																																																																													3
AACATC		1																																																																																																																																																																																																																																																													1
AACATG	1	1																																																																																																																																																																																																																																																													2
AACCAT	1																																																																																																																																																																																																																																																														1
AACCCT	2																																																																																																																																																																																																																																																														2
AACTAT	1																																																																																																																																																																																																																																																														1
AAGAAA	11	5	2															1																																																																																																																																																																																																																																													19
AAGAGC							1																																																																																																																																																																																																																																																								1
AAGAGG	1																																																																																																																																																																																																																																																														1
AAGATG		2																																																																																																																																																																																																																																																													2
AAGCAC		1																																																																																																																																																																																																																																																													1
AAGGAT	2																																																																																																																																																																																																																																																														2
AAGGTC		1																																																																																																																																																																																																																																																													1
AATAAA	24	5	1							1																																																																																																																																																																																																																																																					31
AATAAC	4	1				1																																																																																																																																																																																																																																																									6
AATAAG	2																																																																																																																																																																																																																																																														2
AATAGT	2	1																																																																																																																																																																																																																																																													3
AATATA	34	7	2																																																																																																																																																																																																																																																												43
AATATC	1																																																																																																																																																																																																																																																														1
AATATT	5	1																																																																																																																																																																																																																																																													6
AATCAG		1																																																																																																																																																																																																																																																													1
AATGAA	1	2																																																																																																																																																																																																																																																													3
AATGAT	2	1	1																																																																																																																																																																																																																																																												4
AATGGA	2																																																																																																																																																																																																																																																														2
AATGGT	4	1																																																																																																																																																																																																																																																													5
AATGTA	1		1																																																																																																																																																																																																																																																												2
AATGTC			1																																																																																																																																																																																																																																																												1
AATGTT		1																																																																																																																																																																																																																																																													1
AATTAA	4																																																																																																																																																																																																																																																														4
AATTAC		1	1																																																																																																																																																																																																																																																												2
AATTAT	6	3																																																																																																																																																																																																																																																													9
AATTTT	2																																																																																																																																																																																																																																																														2
ACAAAA	4																																																																																																																																																																																																																																																														4
ACAAAC	3		1																																																																																																																																																																																																																																																												4
ACAAAG	1																																																																																																																																																																																																																																																														1
ACAAAT	1			1																																																																																																																																																																																																																																																											2
ACAAGA	3	1																																																																																																																																																																																																																																																													4
ACAATA	1	1		1																																																																																																																																																																																																																																																											3
ACAATT		1																																																																																																																																																																																																																																																													1
ACACAT	1	1																																																																																																																																																																																																																																																													2
ACAGAT	1																																																																																																																																																																																																																																																														1
ACATAA	3																																																																																																																																																																																																																																																														3
ACATAT	6	3																																																																																																																																																																																																																																																													9
ACATGT	1																																																																																																																																																																																																																																																														1
ACATTG			1																																																																																																																																																																																																																																																												1
ACCAAG	1																																																																																																																																																																																																																																																														1
ACTAAC		1																																																																																																																																																																																																																																																													1
ACTATT	4			1																																																																																																																																																																																																																																																											5
AGAAAA	5	6	1																																																																																																																																																																																																																																																												12
AGAAAC	1																																																																																																																																																																																																																																																														1
AGAAGG		1																																																																																																																																																																																																																																																													1
AGAATA	1																																																																																																																																																																																																																																																														1
AGAATT	1																																																																																																																																																																																																																																																														1
AGAGAA	1	1																																																																																																																																																																																																																																																													2
AGATAA	1		1																																																																																																																																																																																																																																																												2
AGGAAA		1																																																																																																																																																																																																																																																													1
AGGAAG			1																																																																																																																																																																																																																																																												1
AGGAGA			1																																																																																																																																																																																																																																																												1
AGGGTT	1																																																																																																																																																																																																																																																														1
AGGTTT	1																																																																																																																																																																																																																																																														1
AGTAAG	1																																																																																																																																																																																																																																																														1
ATAAAA	19	7																																																																																																																																																																																																																																																													26
ATAAAC	15	3	2																																																																																																																																																																																																																																																												20
ATAAAG	1																																																																																																																																																																																																																																																														1
ATAAAT	113	20	5	2																																																																																																																																																																																																																																																											140
ATAACA		1																																																																																																																																																																																																																																																													1
ATAATC	1	1																																																																																																																																																																																																																																																													2
ATAATG	5																																																																																																																																																																																																																																																														5
ATAATT	5	3																																																																																																																																																																																																																																																													8
ATACAC	1		1																																																																																																																																																																																																																																																												2
ATACAT	8	3	1																																																																																																																																																																																																																																																												12
ATAGAT	1																																																																																																																																																																																																																																																														1
ATAGGA	1																																																																																																																																																																																																																																																														1
ATAGTA	1	1																																																																																																																																																																																																																																																													2
ATATAA	110	9	4	1	1																																																																																																																																																																																																																																																										125
ATATAC	10	2																																																																																																																																																																																																																																																													12
ATATAG	2																															1																																																																																																																																																																																																																															3
ATATGA		1																																																																																																																																																																																																																																																													1
ATATGC	2																																																																																																																																																																																																																																																														2
ATATGT	6	3		1									1																																																																																																																																																																																																																																																		11
ATATTA		1																																																																																																																																																																																																																																																													1
ATATTC	1																																																																																																																																																																																																																																																														1
ATATTT	20	2																																																																																																																																																																																																																																																													22
ATCAAC	1																																																																																																																																																																																																																																																														1
ATCAAG	1																																																																																																																																																																																																																																																														1
ATCATT	7	2	1																																																																																																																																																																																																																																																												10
ATCTAT	2																																																																																																																																																																																																																																																														2
ATCTTC	1																																																																																																																																																																																																																																																														1
ATCTTT	2																																																																																																																																																																																																																																																														2
ATGAAA	1																																																																																																																																																																																																																																																														1
ATGAAC	2				1																																																																																																																																																																																																																																																										3
ATGAAT	1																																																																																																																																																																																																																																																														1
ATGATA	5	3	1	1																																																																																																																																																																																																																																																											10
ATGATC	1																																																																																																																																																																																																																																																														1
ATGGTG	1																																																																																																																																																																																																																																																														1
ATGTAA	1	1																																																																																																																																																																																																																																																													2
ATGTAT	2	1		1																																																																																																																																																																																																																																																											4
ATGTCC	1																																																																																																																																																																																																																																																														1
ATGTTC	2																																																																																																																																																																																																																																																														2
ATTAAA	2																																																																																																																																																																																																																																																														2
ATTAAC	2																																																																																																																																																																																																																																																														2
ATTACC		1																																																																																																																																																																																																																																																													1
ATTACT			1	1																																																																																																																																																																																																																																																											2
ATTAGC			1																																																																																																																																																																																																																																																												1
ATTATA	8	1																																																																																																																																																																																																																																																													9
ATTATC	15	2																																																																																																																																																																																																																																																													17
ATTATG		1																																																																																																																																																																																																																																																													1
ATTGTA	1																																																																																																																																																																																																																																																														1
ATTGTT	1	1																																																																																																																																																																																																																																																													2
ATTTAA	2	1																																																																																																																																																																																																																																																													3
ATTTAC	1	6																																																																																																																																																																																																																																																													7
ATTTAT	30	8	2	1																																																																																																																																																																																																																																																											41
ATTTGC		1																																																																																																																																																																																																																																																													1
ATTTGT	1																																																																																																																																																																																																																																																														1
ATTTTA	4																																																																																																																																																																																																																																																														4
ATTTTC	8	3	1																																																																																																																																																																																																																																																												12
ATTTTG	1																																																																																																																																																																																																																																																														1
ATTTTT	37	6																																																																																																																																																																																																																																																													43
CAAAAA	3			1																																																																																																																																																																																																																																																											4
CAAATG	1																																																																																																																																																																																																																																																														1
CAACAC	4																																																																																																																																																																																																																																																														4
CAACAG	1																																																																																																																																																																																																																																																														1
CAAGAA	1																																																																																																																																																																																																																																																														1
CAATAA	1		2	1																																																																																																																																																																																																																																																											4
CAATAC	1																																																																																																																																																																																																																																																														1
CAATGA					1																																																																																																																																																																																																																																																										1
CACTAC	1																																																																																																																																																																																																																																																														1
CATAAA	3																																																																																																																																																																																																																																																														3
CATATA		2																																																																																																																																																																																																																																																													2
CATCAC	1																																																																																																																																																																																																																																																														1
CATCCC	1																																																																																																																																																																																																																																																														1
CATCGT			1																																																																																																																																																																																																																																																												1
CATCTT	1																																																																																																																																																																																																																																																														1
CATGAA	1																																																																																																																																																																																																																																																														1
CATGAG	1																																																																																																																																																																																																																																																														1
CATGAT	2	1																																																																																																																																																																																																																																																													3
CATTAA	1																																																																																																																																																																																																																																																														1
CATTAT	1		1																																																																																																																																																																																																																																																												2
CATTCA	1																																																																																																																																																																																																																																																														1
CATTTA	1	1																																																																																																																																																																																																																																																													2
CATTTC	1			1							1																																																																																																																																																																																																																																																				3
CATTTG		1																																																																																																																																																																																																																																																													1
CATTTT			1																																																																																																																																																																																																																																																												1
CCATTA	5																																																																																																																																																																																																																																																														5
CCATTT	3																																																																																																																																																																																																																																																														3
CCTAAA	17	2																																																																																																																																																																																																																																																													19
CCTTCC		1																																																																																																																																																																																																																																																													1
CCTTTA	3																																																																																																																																																																																																																																																														3
CCTTTC		1																																																																																																																																																																																																																																																													1
CCTTTT		3	2					1																																																																																																																																																																																																																																																							6
CGAAGA	1																																																																																																																																																																																																																																																														1
CTACCA	2	1																																																																																																																																																																																																																																																													3
CTATTA		1																																																																																																																																																																																																																																																													1
CTCCAC	1																																																																																																																																																																																																																																																														1
CTGATG		1																																																																																																																																																																																																																																																													1
CTTACT	1																																																																																																																																																																																																																																																														1
CTTCAC	2																																																																																																																																																																																																																																																														2
CTTCGT	2																																																																																																																																																																																																																																																														2
CTTTTC	3	1																																																																																																																																																																																																																																																													4
CTTTTT	9	3																																																																																																																																																																																																																																																													12
GAAAAA	13	4	2		1																																																																																																																																																																																																																																																										20
GAAAAG	5	3																																																																																																																																																																																																																																																													8
GAAAAT	3																																																																																																																																																																																																																																																														3
GAAAGA	2																																																																																																																																																																																																																																																														2
GAAATA	1		1																																																																																																																																																																																																																																																												2
GAAATT		1																																																																																																																																																																																																																																																													1
GAACAC			2																																																																																																																																																																																																																																																												2
GAACAT	1																																																																																																																																																																																																																																																														1
GAAGAC	1																																																																																																																																																																																																																																																														1
GAAGAG	2																																																																																																																																																																																																																																																														2
GAAGAT	3																																																																																																																																																																																																																																																														3
GAAGGT	2																																																																																																																																																																																																																																																														2
GAAGTA	1																																																																																																																																																																																																																																																														1
GAATAA	1																																																																																																																																																																																																																																																														1
GAATAT		1																																																																																																																																																																																																																																																													1
GACAAA		1																																																																																																																																																																																																																																																													1
GAGAAA	1																																																																																																																																																																																																																																																														1
GAGGAT		1																																																																																																																																																																																																																																																													1
GATAAA	4																																																																																																																																																																																																																																																														4
GATAAG		1																																																																																																																																																																																																																																																													1
GATAAT	2																																																																																																																																																																																																																																																														2
GATATA	2																																																																																																																																																																																																																																																														2
GATCTT		1																																																																																																																																																																																																																																																													1
GATGAA	3																																																																																																																																																																																																																																																														3
GATGAC	4	1																																																																																																																																																																																																																																																													5
GATGGG	1																																																																																																																																																																																																																																																														1
GATGTG	1																																																																																																																																																																																																																																																														1
GCTTGA	1																																																																																																																																																																																																																																																														1
GGAAAA	2																																																																																																																																																																																																																																																														2
GGAAAT		1																																																																																																																																																																																																																																																													1
GGTCTT	1																																																																																																																																																																																																																																																														1
GGTGAT	3	1																																																																																																																																																																																																																																																													4
GGTGCT	1																																																																																																																																																																																																																																																														1
GGTTTA	4																																																																																																																																																																																																																																																														4
GTAAAA	1																																																																																																																																																																																																																																																														1
GTAAAT		1																																																																																																																																																																																																																																																													1
GTAATA	2																																																																																																																																																																																																																																																														2
GTATAT	2																																																																																																																																																																																																																																																														2
GTATTA	1																																																																																																																																																																																																																																																														1
GTCAAC	1																																																																																																																																																																																																																																																														1
GTCTTC	1																																																																																																																																																																																																																																																														1
GTGATT	2																																																																																																																																																																																																																																																														2
GTGGTA	1																																																																																																																																																																																																																																																														1
GTGTTA		1																																																																																																																																																																																																																																																													1
GTTATC			1																																																																																																																																																																																																																																																												1
GTTATT	1																																																																																																																																																																																																																																																														1
GTTTAT	1		1																																																																																																																																																																																																																																																												2
TAAAAA	13	9	1																																																																																																																																																																																																																																																												23
TAAAAG	1	1																																																																																																																																																																																																																																																													2
TAAAAT	4	2																																																																																																																																																																																																																																																													6
TAAACA	1	3		1																																																																																																																																																																																																																																																											5
TAAACC	1																																																																																																																																																																																																																																																														1
TAAAGA		1																																																																																																																																																																																																																																																													1
TAAATA	24	3	1		2																																																																																																																																																																																																																																																										30
TAAATG	2	1																																																																																																																																																																																																																																																													3
TAAATT	1																																																																																																																																																																																																																																																														1
TAACAA	1						1																																																																																																																																																																																																																																																								2
TAACCC	1																																																																																																																																																																																																																																																														1
TAATAC	3																																																																																																																																																																																																																																																														3
TAATAG	7	1	2																																																																																																																																																																																																																																																												10
TAATAT	1																																																																																																																																																																																																																																																														1
TAATCA	1																																																																																																																																																																																																																																																														1
TAATGA	2																																																																																																																																																																																																																																																														2
TAATTA	6	1																																																																																																																																																																																																																																																													7
TAATTT	2																																																																																																																																																																																																																																																														2
TACATA	4																																																																																																																																																																																																																																																														4
TACTAT	5	3																																																																																																																																																																																																																																																													8
TAGAAC		1																																																																																																																																																																																																																																																													1
TAGTAA	2	1																																																																																																																																																																																																																																																													3
TAGTTC		1																																																																																																																																																																																																																																																													1
TATAAA	14	3	1																																																																																																																																																																																																																																																												18
TATAAT	6	2	2																																																																																																																																																																																																																																																												10
TATACA	1																																																																																																																																																																																																																																																														1
TATATC	2															1																																																																																																																																																																																																																																															3
TATATG	7	3	3																																																																																																																																																																																																																																																												13
TATATT	87	20	5	1																																																																																																																																																																																																																																																											113
TATCAT	3	3																																																																																																																																																																																																																																																													6
TATCTA		1																																																																																																																																																																																																																																																													1
TATCTT	1	1	1																																																																																																																																																																																																																																																												3
TATGTA	6																																																																																																																																																																																																																																																														6
TATGTG	4			1																																																																																																																																																																																																																																																											5
TATGTT	6																																																																																																																																																																																																																																																														6
TATTAA	3																																																																																																																																																																																																																																																														3
TATTAC	11	4																																																																																																																																																																																																																																																													15
TATTGT	2																																																																																																																																																																																																																																																														2
TATTTA	101	16	2																																																																																																																																																																																																																																																												119
TATTTC		1																																																																																																																																																																																																																																																													1
TATTTG	2	2																																																																																																																																																																																																																																																													4
TATTTT	33	16	5																																																																																																																																																																																																																																																												54
TCACCT	1																																																																																																																																																																																																																																																														1
TCAGAC			1																																																																																																																																																																																																																																																												1
TCATAA				1																																																																																																																																																																																																																																																											1
TCATAT		1																																																																																																																																																																																																																																																													1
TCATCC	1																																																																																																																																																																																																																																																														1
TCATCG	2																																																																																																																																																																																																																																																														2
TCATCT	1																																																																																																																																																																																																																																																														1
TCATTA	1																																																																																																																																																																																																																																																														1
TCATTT	2	1	2																																																																																																																																																																																																																																																												5
TCCATT	1																																																																																																																																																																																																																																																														1
TCCTCA	1	1																																																																																																																																																																																																																																																													2
TCCTCT	1																																																																																																																																																																																																																																																														1
TCGTCT	2																																																																																																																																																																																																																																																														2
TCTATA	3																																																																																																																																																																																																																																																														3
TCTCCT	1																																																																																																																																																																																																																																																														1
TCTCTA	2																																																																																																																																																																																																																																																														2
TCTCTT	1																																																																																																																																																																																																																																																														1
TCTTAT	1																																																																																																																																																																																																																																																														1
TCTTCA	2	4																																																																																																																																																																																																																																																													6
TCTTCC	2		1																																																																																																																																																																																																																																																												3
TCTTCG	1																																																																																																																																																																																																																																																														1
TCTTTA	2																																																																																																																																																																																																																																																														2
TCTTTC	4	2	1		1																																																																																																																																																																																																																																																										8
TCTTTT	4	3	1																																																																																																																																																																																																																																																												8
TGAAAA		2																																																																																																																																																																																																																																																													2
TGAAAT	1																																																																																																																																																																																																																																																														1
TGAACA	1																																																																																																																																																																																																																																																														1
TGAAGA		1																																																																																																																																																																																																																																																													1
TGAATC	1																																																																																																																																																																																																																																																														1
TGACGA	1	1																																																																																																																																																																																																																																																													2
TGATAA	1	1	1																																																																																																																																																																																																																																																												3
TGATGT			1																																																																																																																																																																																																																																																												1
TGATTA		1																																																																																																																																																																																																																																																													1
TGCAAC	1																																																																																																																																																																																																																																																														1
TGCTGG		1																																																																																																																																																																																																																																																													1
TGTAAA	3	1																																																																																																																																																																																																																																																													4
TGTATA	2		1																																																																																																																																																																																																																																																												3
TGTATG			1																																																																																																																																																																																																																																																												1
TGTATT	1																																																																																																																																																																																																																																																														1
TGTGAG	1																																																																																																																																																																																																																																																														1
TGTGCT			1																																																																																																																																																																																																																																																												1
TGTGTA	1	1																																																																																																																																																																																																																																																													2
TGTGTT		1																																																																																																																																																																																																																																																													1
TGTTAT	1	1																																																																																																																																																																																																																																																													2
TGTTGA	2																																																																																																																																																																																																																																																														2
TGTTTA				2																																																																																																																																																																																																																																																											2
TGTTTT	1		1																																																																																																																																																																																																																																																												2
TTAATA	1																																																																																																																																																																																																																																																														1
TTAATG	2																																																																																																																																																																																																																																																														2
TTACAT	1																																																																																																																																																																																																																																																														1
TTACTT		2																																																																																																																																																																																																																																																													2
TTATAG	1																																																																																																																																																																																																																																																														1
TTATAT	19	5	1	2																																																																																																																																																																																																																																																											27
TTATCA	1																																																																																																																																																																																																																																																														1
TTATCC	2	1																																																																																																																																																																																																																																																													3
TTATCT	2			1																																																																																																																																																																																																																																																											3
TTATGA	1																																																																																																																																																																																																																																																														1
TTATGT	1																																																																																																																																																																																																																																																														1
TTATTC	4																																																																																																																																																																																																																																																														4
TTATTG	7	2		1																																																																																																																																																																																																																																																											10
TTATTT	30	6																																																																																																																																																																																																																																																													36
TTCATC	4	1																																																																																																																																																																																																																																																													5
TTCATT	1																																																																																																																																																																																																																																																														1
TTCCTT	1																																																																																																																																																																																																																																																														1
TTCTCC	1																																																																																																																																																																																																																																																														1
TTCTTA	3																																																																																																																																																																																																																																																														3
TTCTTT	14		1	1																																																																																																																																																																																																																																																											16
TTGATT	2																																																																																																																																																																																																																																																														2
TTGTAT		1																																																																																																																																																																																																																																																													1
TTGTCC	1																																																																																																																																																																																																																																																														1
TTGTTA	1	1																																																																																																																																																																																																																																																													2
TTGTTC	2		1																																																																																																																																																																																																																																																												3
TTGTTT	1																																																																																																																																																																																																																																																														1
TTTAAT	2																																																																																																																																																																																																																																																														2
TTTACA	2																																																																																																																																																																																																																																																														2
TTTAGG	1																																																																																																																																																																																																																																																														1
TTTATA	68	7																																																																																																																																																																																																																																																													75
TTTATC	1			1																																																																																																																																																																																																																																																											2
TTTATG	5	2	1	1		1																																																																																																																																																																																																																																																									10
TTTATT	41	7			1																																																																																																																																																																																																																																																										49
TTTCAT	1	1																																																																																																																																																																																																																																																													2
TTTCCT	5																																																																																																																																																																																																																																																														5
TTTCTC	1																																																																																																																																																																																																																																																														1
TTTCTG	1																																																																																																																																																																																																																																																														1
TTTCTT	15	3		1																																																																																																																																																																																																																																																											19
TTTGTA	4																																																																																																																																																																																																																																																														4
TTTGTC	1																																																																																																																																																																																																																																																														1
TTTGTG	1																																																																																																																																																																																																																																																														1
TTTGTT	1	1																																																																																																																																																																																																																																																													2
TTTTAA	5	2	1																																																																																																																																																																																																																																																												8
TTTTAC	4																																																																																																																																																																																																																																																														4
TTTTAT	32	5	1																																																																																																																																																																																																																																																												38
TTTTCA	2	2			1																																																																																																																																																																																																																																																										5
TTTTCC	4																																																																																																																																																																																																																																																														4
TTTTCT	18	6		1																																																																																																																																																																																																																																																											25
TTTTGA	1																																																																																																																																																																																																																																																														1
TTTTGT	3	3	3																																																																																																																																																																																																																																																												9
TTTTTA	79	17	6	1																																																																																																																																																																																																																																																											103
TTTTTC	61	17	4																																																																																																																																																																																																																																																												82
TTTTTG	4	6	2	1																																																																																																																																																																																																																																																											13

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	169	170	171	172	173	174	175	176	177	178	179	180	181	182	183	184	185	186	187	188	189	190	191	192	193	194	195	196	197	198	199	200	201	202	203	204	205	206	207	208	209	210	211	212	213	214	215	216	217	218	219	220	221	222	223	224	225	226	227	228	229	230	231	232	233	234	235	236	237	238	239	240	241	242	243	244	245	246	247	248	249	250	251	252	253	254	255	256	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1687	1499	1405	1287	1109	1007	950	920	711	603	478	338	311	277	276	227	192	130	97	68	45	31	19	16	17	11	5	7	3	2	1	3	1	1	2	1	1	1	1							1				2	2							1		1			2							1	1														1	1			1		1																							1																																		1																															1																	1																																									1	13760
AC/GT	-	-	-	164	49	32	9	9	4	2		1																																																																																																																																																																																																																																																			270
AG/CT	-	-	-	25	15	5	3	1		2		1	1																																																																																																																																																																																																																																																		53
AT/AT	-	-	-	8547	5416	4240	3828	3435	3247	3160	2977	2639	2498	2041	1717	1324	1157	942	689	571	382	229	137	110	66	39	39	16	9	9	6	5	3	2	2	2		2	1			1																																																																																																																																																																																																																					49488
CG/CG	-	-	-	1																																																																																																																																																																																																																																																											1
AAC/GTT	-	-	84	38	26	18	12	10	7	6	2	1		2	1				2			1			1		1								1																																																																																																																																																																																																																												213
AAG/CTT	-	-	146	67	25	18	9	12	3		2																																																																																																																																																																																																																																																				282
AAT/ATT	-	-	2459	1373	1015	731	480	358	206	126	101	52	27	21	11	8	8	7	1	4	2	2	1		1									1																																																																																																																																																																																																																													6995
ACC/GGT	-	-	9	4	3																																																																																																																																																																																																																																																										16
ACG/CGT	-	-	4	1																																																																																																																																																																																																																																																											5
ACT/AGT	-	-	105	37	21	6	3	4	2		2	1	1	2					1												1												1																																																																																																																																																																																																																				187
AGG/CCT	-	-	9	3	4	5		1																																																																																																																																																																																																																																																							22
ATC/ATG	-	-	248	96	39	22	10	6	6	1	1	1			1									1						1																																																																																																																																																																																																																																	433
AAAC/GTTT	-	52	10	16	4	3		1		1													1								1																																																																																																																																																																																																																																89
AAAG/CTTT	-	65	29	17	12	4	1	1	1	1						1																																																																																																																																																																																																																																															132
AAAT/ATTT	-	3002	1431	754	381	166	80	43	14	6	5	2	4	1			1																																																																																																																																																																																																																																														5890
AACT/AGTT	-	3																																																																																																																																																																																																																																																													3
AAGC/CTTG	-	1																																																																																																																																																																																																																																																													1
AAGG/CCTT	-	4																																																																																																																																																																																																																																																													4
AAGT/ACTT	-	5	1	1																																																																																																																																																																																																																																																											7
AATC/ATTG	-	2	2	3																																																																																																																																																																																																																																																											7
AATG/ATTC	-	12	8	6		3																																																																																																																																																																																																																																																									29
AATT/AATT	-	29	11	2	1																																																																																																																																																																																																																																																										43
ACAT/ATGT	-	252	127	47	20	18	10	11	1	3	6	2	2			4	1		1	1		1	2			1		1	1			3						1		1	1	1																	1						1										1																																																																																																																																																																																				522
AGAT/ATCT	-	8																																																																																																																																																																																																																																																													8
AGCT/AGCT	-	1																																																																																																																																																																																																																																																													1
ATCC/ATGG	-	1		1																																																																																																																																																																																																																																																											2
ATGC/ATGC	-	1																																																																																																																																																																																																																																																													1
AAAAC/GTTTT	111	31	12	4	6																																																																																																																																																																																																																																																										164
AAAAG/CTTTT	304	52	34	11	1	2	1																																																																																																																																																																																																																																																								405
AAAAT/ATTTT	2139	755	289	91	36	11	4	1	2	1	1	1	1	2																																																																																																																																																																																																																																																	3334
AAACC/GGTTT	1	1																																																																																																																																																																																																																																																													2
AAAGC/CTTTG	3																																																																																																																																																																																																																																																														3
AAAGG/CCTTT	21	1	1	3		1																																																																																																																																																																																																																																																									27
AAAGT/ACTTT	1																																																																																																																																																																																																																																																														1
AAATC/ATTTG	11	3	1	1																																																																																																																																																																																																																																																											16
AAATG/ATTTC	56	11	5																																																																																																																																																																																																																																																												72
AAATT/AATTT	92	24	9	2																																																																																																																																																																																																																																																											127
AACAC/GTGTT	2	1																																																																																																																																																																																																																																																													3
AACAG/CTGTT	3	1																																																																																																																																																																																																																																																													4
AACAT/ATGTT	16			1																																																																																																																																																																																																																																																											17
AACCT/AGGTT	1																																																																																																																																																																																																																																																														1
AACTG/AGTTC	1																																																																																																																																																																																																																																																														1
AACTT/AAGTT	7	3																																																																																																																																																																																																																																																													10
AAGAC/CTTGT		1																																																																																																																																																																																																																																																													1
AAGAG/CTCTT	5																																																																																																																																																																																																																																																														5
AAGAT/ATCTT	5			1	1																																																																																																																																																																																																																																																										7
AAGCC/CTTGG	1																																																																																																																																																																																																																																																														1
AAGGG/CCCTT	2																																																																																																																																																																																																																																																														2
AAGTG/ACTTC	1																																																																																																																																																																																																																																																														1
AATAC/ATTGT	15	12	1		2																																																																																																																																																																																																																																																										30
AATAG/ATTCT	9	3	1																																																																																																																																																																																																																																																												13
AATAT/ATATT	1392	320	102	42	31	12	9	3	6	3	7	8	1	5	2	2		2	2	2	1	2				1			1	1				1	1		1																																																																																																																																																																																																																										1960
AATCT/AGATT	1																																																																																																																																																																																																																																																														1
AATGG/ATTCC	130	38	30	5		1			1																																																																																																																																																																																																																																																						205
AATGT/ACATT	3																																																																																																																																																																																																																																																														3
AATTC/AATTG	1	5	1																																																																																																																																																																																																																																																												7
ACACC/GGTGT	9																																																																																																																																																																																																																																																														9
ACATC/ATGTG	27																																																																																																																																																																																																																																																														27
ACATG/ATGTC		1																																																																																																																																																																																																																																																													1
ACTAT/AGTAT	4																																																																																																																																																																																																																																																														4
AGATG/ATCTC	1																																																																																																																																																																																																																																																														1
ATATC/ATATG	19	8		2		1																																																																																																																																																																																																																																																									30
AAAAAC/GTTTTT	31	12	11	3																																																																																																																																																																																																																																																											57
AAAAAG/CTTTTT	219	70	13	4	1		1											1																																																																																																																																																																																																																																													309
AAAAAT/ATTTTT	502	127	21	4	1	1	1			1																																																																																																																																																																																																																																																					658
AAAAGG/CCTTTT	22	9	2					1																																																																																																																																																																																																																																																							34
AAAAGT/ACTTTT	7	4																																																																																																																																																																																																																																																													11
AAAATC/ATTTTG	4	1																																																																																																																																																																																																																																																													5
AAAATG/ATTTTC	31	12	5		1																																																																																																																																																																																																																																																										49
AAAATT/AATTTT	38	6	1																																																																																																																																																																																																																																																												45
AAACAC/GTGTTT	4	3	1																																																																																																																																																																																																																																																												8
AAACAG/CTGTTT	2																																																																																																																																																																																																																																																														2
AAACAT/ATGTTT	38	11	7	4		2																																																																																																																																																																																																																																																									62
AAACCT/AGGTTT	24	2																																																																																																																																																																																																																																																													26
AAAGAC/CTTTGT	3	1																																																																																																																																																																																																																																																													4
AAAGAG/CTCTTT	12	3	1	1	1																																																																																																																																																																																																																																																										18
AAAGAT/ATCTTT	20	2	2	2																																																																																																																																																																																																																																																											26
AAAGGG/CCCTTT	1	1																																																																																																																																																																																																																																																													2
AAAGGT/ACCTTT	3																																																																																																																																																																																																																																																														3
AAATAC/ATTTGT	11	4		1																																																																																																																																																																																																																																																											16
AAATAG/ATTTCT	2	2	2																																																																																																																																																																																																																																																												6
AAATAT/ATATTT	678	113	29	8	4																																																																																																																																																																																																																																																										832
AAATGC/ATTTGC	2	2																																																																																																																																																																																																																																																													4
AAATGG/ATTTCC	7	1		2							1																																																																																																																																																																																																																																																				11
AAATGT/ACATTT	13	11	1																																																																																																																																																																																																																																																												25
AAATTG/AATTTC	1	1																																																																																																																																																																																																																																																													2
AAATTT/AAATTT	5	1																																																																																																																																																																																																																																																													6
AACAAG/CTTGTT	6	1	1																																																																																																																																																																																																																																																												8
AACAAT/ATTGTT	22	8	2	3		1	1																																																																																																																																																																																																																																																								37
AACACC/GGTGTT	4																																																																																																																																																																																																																																																														4
AACACG/CGTGTT			2																																																																																																																																																																																																																																																												2
AACACT/AGTGTT		2																																																																																																																																																																																																																																																													2
AACAGC/CTGTTG	1																																																																																																																																																																																																																																																														1
AACATC/ATGTTG	3	1	1																																																																																																																																																																																																																																																												5
AACATG/ATGTTC	8	1			1																																																																																																																																																																																																																																																										10
AACATT/AATGTT	5	1																																																																																																																																																																																																																																																													6
AACCAT/ATGGTT	1																																																																																																																																																																																																																																																														1
AACCCT/AGGGTT	4																																																																																																																																																																																																																																																														4
AACGAT/ATCGTT			1																																																																																																																																																																																																																																																												1
AACGTC/ACGTTG	1																																																																																																																																																																																																																																																														1
AACTAG/AGTTCT		2																																																																																																																																																																																																																																																													2
AACTAT/AGTTAT	2																																																																																																																																																																																																																																																														2
AACTGC/AGTTGC	1																																																																																																																																																																																																																																																														1
AAGAAT/ATTCTT	12																																																																																																																																																																																																																																																														12
AAGACC/CTTGGT	2																																																																																																																																																																																																																																																														2
AAGACG/CGTCTT	8																																																																																																																																																																																																																																																														8
AAGAGC/CTCTTG							1																																																																																																																																																																																																																																																								1
AAGAGG/CCTCTT	6		2																																																																																																																																																																																																																																																												8
AAGAGT/ACTCTT	2																																																																																																																																																																																																																																																														2
AAGATC/ATCTTG	1	1																																																																																																																																																																																																																																																													2
AAGATG/ATCTTC	15	8																																																																																																																																																																																																																																																													23
AAGCAC/CTTGTG		1	1																																																																																																																																																																																																																																																												2
AAGCTC/AGCTTG	1																																																																																																																																																																																																																																																														1
AAGGAC/CCTTGT	1																																																																																																																																																																																																																																																														1
AAGGAG/CCTTCT	2	1	1																																																																																																																																																																																																																																																												4
AAGGAT/ATCCTT	4	2																																																																																																																																																																																																																																																													6
AAGGGG/CCCCTT		1																																																																																																																																																																																																																																																													1
AAGGTC/ACCTTG		1																																																																																																																																																																																																																																																													1
AAGGTG/ACCTTC	5																																																																																																																																																																																																																																																														5
AAGTAG/ACTTCT	1																																																																																																																																																																																																																																																														1
AATACC/ATTGGT	1																																																																																																																																																																																																																																																														1
AATACT/AGTATT	4																																																																																																																																																																																																																																																														4
AATAGG/ATTCCT	1																																																																																																																																																																																																																																																														1
AATAGT/ACTATT	34	12	3	2																																																																																																																																																																																																																																																											51
AATATC/ATATTG	1																																																																																																																																																																																																																																																														1
AATATG/ATATTC	2	3																																																																																																																																																																																																																																																													5
AATATT/AATATT	10	2																																																																																																																																																																																																																																																													12
AATCAC/ATTGTG	2																																																																																																																																																																																																																																																														2
AATCAG/ATTCTG		1																																																																																																																																																																																																																																																													1
AATCAT/ATGATT	3	3		1																																																																																																																																																																																																																																																											7
AATCTG/AGATTC	1																																																																																																																																																																																																																																																														1
AATGAC/ATTGTC					1																																																																																																																																																																																																																																																										1
AATGAT/ATCATT	45	12	5	1																																																																																																																																																																																																																																																											63
AATGCT/AGCATT			1																																																																																																																																																																																																																																																												1
AATGGT/ACCATT	9	2																																																																																																																																																																																																																																																													11
AATGTC/ACATTG			2																																																																																																																																																																																																																																																												2
AATGTG/ACATTC	1																																																																																																																																																																																																																																																														1
AATTAC/AATTGT	1	2	1																																																																																																																																																																																																																																																												4
AATTAG/AATTCT	1																																																																																																																																																																																																																																																														1
AATTAT/AATTAT	31	10	2																																																																																																																																																																																																																																																												43
ACACAT/ATGTGT	7	2	2	1																																																																																																																																																																																																																																																											12
ACACTC/AGTGTG	1																																																																																																																																																																																																																																																														1
ACAGAT/ATCTGT	1																																																																																																																																																																																																																																																														1
ACATAT/ATATGT	54	17	5	2									1																																																																																																																																																																																																																																																		79
ACATCC/ATGTGG	1																																																																																																																																																																																																																																																														1
ACATGG/ATGTCC	1																																																																																																																																																																																																																																																														1
ACATGT/ACATGT	1																																																																																																																																																																																																																																																														1
ACCACT/AGTGGT	4	1																																																																																																																																																																																																																																																													5
ACCAGC/CTGGTG	1	1																																																																																																																																																																																																																																																													2
ACCATC/ATGGTG	5	1																																																																																																																																																																																																																																																													6
ACCTCC/AGGTGG	1																																																																																																																																																																																																																																																														1
ACGATG/ATCGTC	7	2	1																																																																																																																																																																																																																																																												10
ACTCAG/AGTCTG			1																																																																																																																																																																																																																																																												1
AGAGAT/ATCTCT	2																																																																																																																																																																																																																																																														2
AGATAT/ATATCT	12	1														1																1																																																																																																																																																																																																																															15
AGCATC/ATGCTG		1																																																																																																																																																																																																																																																													1
AGCATG/ATGCTC	1																																																																																																																																																																																																																																																														1
AGGATG/ATCCTC	2	2																																																																																																																																																																																																																																																													4
ATATGC/ATATGC	2																																																																																																																																																																																																																																																														2
ATCATG/ATCATG	3	1																																																																																																																																																																																																																																																													4
ATCCCC/ATGGGG	2																																																																																																																																																																																																																																																														2
