Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_001861275.1/fasta/hub_GCA_001861275.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1321
Total size of examined sequences (bp):           28202648
Total number of identified SSRs:                 84576
Number of SSR containing sequences:              1248
Number of sequences containing more than 1 SSR:  1200
Number of SSRs present in compound formation:    35847


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	13225
2	48782
3	7573
4	6360
5	6070
6	2566

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	767	755	689	636	556	519	441	419	333	291	249	193	139	149	111	97	92	59	57	37	24	18	11	10	5	2	4	1	3		1			2	1		1	1		2	1											1	1																																																		6678
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1																																																																																																					1
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	777	768	662	604	512	476	468	400	382	298	202	186	145	98	110	119	89	73	45	42	19	27	11	3	8	9	4	2		1				1					1		1	1	1																																																											1	6546
AC	-	-	-	30	15	8	4	4			1																																																																																																													62
AG	-	-	-	3	3	2	1	1			1		1																																																																																																											12
AT	-	-	-	5094	3281	2595	2444	2249	2176	1905	1783	1506	1388	1183	931	731	635	531	387	312	227	153	96	68	36	37	13	6	9		5	1	1	1	1			1	1																																																																																	29787
CA	-	-	-	29	10	1	3			1																																																																																																														44
CT	-	-	-	3	3																																																																																																																			6
GA	-	-	-	3	3	2			1																																																																																																															9
GC	-	-	-	1																																																																																																																				1
GT	-	-	-	17	7	7		1					1																																																																																																											33
TA	-	-	-	3904	2493	1861	1647	1463	1295	1086	988	843	680	567	501	357	330	222	163	103	81	51	30	25	14	10	9	2	1											1																																																																																18727
TC	-	-	-	8	5	5	2																																																																																																																	20
TG	-	-	-	53	14	8	1	1	1	1	1	1																																																																																																												81
AAC	-	-	25	15	1	5	2	3	3						1	1																																																																																																								56
AAG	-	-	13	6	5	1	1	1	1															1																																																																																																29
AAT	-	-	441	269	190	139	117	70	41	26	18	14	4	1	2		2																																																																																																							1334
ACA	-	-	11	3	3											1																																																																																																								18
ACC	-	-	3		1																																																																																																																			4
ACG	-	-	1																																																																																																																					1
ACT	-	-	5	3			1	1																																																																																																																10
AGA	-	-	11	4	6	2																																																																																																																		23
AGG	-	-	6	1																																																																																																																				7
AGT	-	-	7	8				1																																																																																																																16
ATA	-	-	463	256	144	110	92	57	39	23	9	15	9	7	2	1	1		2		1	1				2																																																																																														1234
ATC	-	-	42	14	9	1	3	1																																																																																																																70
ATG	-	-	57	21	8	4	1	1	1												1																																																																																																			94
ATT	-	-	370	232	165	116	72	45	29	20	9	4	4	5	4					1				1																																																																																																1077
CAA	-	-	6	4		3	1	1	2	1																																																																																																														18
CAT	-	-	19	11	4	3		2	1																																																																																																															40
CCA	-	-	1			1																																																																																																																		2
CCT	-	-				1																																																																																																																		1
CGA	-	-		1																																																																																																																				1
CTA	-	-	8	5		1																																																																																																																		14
CTC	-	-	1				1																																																																																																																	2
CTT	-	-	6	5	3	1																																																																																																																		15
GAA	-	-	26	11	4	4	2			1																																																																																																														48
GAC	-	-	1	1																																																																																																																				2
GAG	-	-	7	2	1																																																																																																																			10
GAT	-	-	44	19	7	2	2	2											1	1		1																																																																																																		79
GGA	-	-	4																																																																																																																					4
GGT	-	-											1																																																																																																											1
GTA	-	-	19	5	1	1																																																																																																																		26
GTC	-	-		1																																																																																																																				1
GTG	-	-	1		1																																																																																																																			2
GTT	-	-	6	6	3	2	2	2	3																			1																																																																																												25
TAA	-	-	217	105	78	65	49	25	23	12	3	1	3	2	2					1	1																																																																																																			587
TAC	-	-	42	16	3	5	1		1				1			1				1																																																																																																				71
TAG	-	-	16	10	4	5	1						1					1	1																																																																																																					39
TAT	-	-	465	241	221	121	109	69	31	20	19	9	6	4	3	2		2																																																																																																						1322
TCA	-	-	58	18	12	1	2	1							1																																																																																																									93
TCC	-	-	6	1	1																																																																																																																			8
TCG	-	-	2																																																																																																																					2
TCT	-	-	29	16	11	5	2	2	2																																																																																																															67
TGA	-	-	19	7	2		2																																																																																																																	30
TGG	-	-	1																																																																																																																					1
TGT	-	-	13	8	3	2	2		3		2	1			1			1																																																																																																						36
TTA	-	-	351	181	121	78	67	43	26	26	10	9	1	3	3																																																																																																									919
TTC	-	-	39	16	7	6	2	3	1																																																																																																															74
TTG	-	-	29	12	6	4	1	3	1	3		1																																																																																																												60
AAAC	-	14	6																																					1																																																																																21
AAAG	-	9	6	3	1		2																																																																																																																	21
AAAT	-	458	238	128	74	26	21	4	4	2			1	3																																																																																																										959
AACA	-	4	2														1																																																																																																							7
AAGA	-	10	3	1																																																																																																																				14
AAGC	-	1																																																																																																																						1
AAGG	-	1																																																																																																																						1
AAGT	-	1			1																																																																																																																			2
AATA	-	348	200	99	59	21	11	6	4	2					1																																																																																																									751
AATC	-	1	1																																																																																																																					2
AATG	-	2	2	1																																																																																																																				5
AATT	-	5	2	1																																																																																																																				8
ACAA	-	1			1	1																																																																																																																		3
ACAT	-	26	12	6	8	1	1		2			1	1					2		1					1																		1																																																																													63
ACTT	-	1																																																																																																																						1
AGAA	-	6	1	1																																																																																																																				8
AGAT	-	2																																																																																																																						2
AGTA	-	1																																																																																																																						1
ATAA	-	452	211	97	41	19	9	4	3			2	1																																																																																																											839
ATAC	-	71	32	16	5	5	6			2		1	1		1			1						1																					1																																																																											143
ATAG	-	2																																																																																																																						2
ATCT	-	1																																																																																																																						1
ATGA	-	2																																																																																																																						2
ATGC	-		1																																																																																																																					1
ATGT	-	18	8		1			1	1																1										1																																																																																					31
ATTA	-	6		2																																																																																																																				8
ATTC	-	2	4	1	1	1																																																																																																																		9
ATTT	-	252	137	61	27	17	5		1	1																																																																																																														501
CAAA	-	3	2	2	3	1																																																																																																																		11
CAAT	-	1	1	2																																																																																																																				4
CATA	-	14	6	5		3											1																																																																																																							29
CATC	-			1																																																																																																																				1
CATT	-	4																																																																																																																						4
CTTT	-		1																							1																																																																																														2
GAAA	-	7	6	1	1					1																																																																																																														16
GAAG	-	1																																																																																																																						1
GAAT	-		1																																																																																																																					1
GATA	-	1																																																																																																																						1
GATG	-	1																																																																																																																						1
GCTA	-	2																																																																																																																						2
GGAT	-			1																																																																																																																				1
GTAT	-	31	8	2		2	1															1																																																								1																																										46
GTTT	-	4		1			1																																																																																																																	6
TAAA	-	157	75	31	10	3	3	4	1																																																																																																															284
TAAT	-	10	1	2																																																																																																																				13
TACA	-	15	9	2													1													1																																																1																																										29
TAGA	-	1																																																																																																																						1
TAGT	-	1																																																																																																																						1
TATC	-	2	1																																																																																																																					3
TATG	-	79	22	8	4	2	2			1			1																																																																																																											119
TATT	-	512	253	130	49	20	11	6	4	1			1																																																																																																											987
TCAT	-	1	1																																																																																																																					2
TCTA	-	1																																																																																																																						1
TCTT	-	1		1		1																																																																																																																		3
TGAA	-	1	1																																																																																																																					2
TGAT	-	1																																																																																																																						1
TGTA	-	19	8	6	1		2						1	2														1										1																																																																																		41
TGTT	-	4																																																																																																																						4
TTAA	-	8	2		1																																																																																																																			11
TTAG	-	1																																																																																																																						1
TTAT	-	309	154	81	30	17	11	1	1	3																																																																																																														607
TTCA	-	1	1			1																																																																																																																		3
TTCC	-	1																																																																																																																						1
TTCT	-	7	2	2	2		2																																																																																																																	15
TTGA	-	1	2	1																																																																																																																				4
TTGT	-	3		2	1																																																																																																																			6
TTTA	-	348	130	70	40	18	11	5	2	1																																																																																																														625
TTTC	-	18	7	2	3	4	2					1	1																																																																																																											38
TTTG	-	13	4	3	3	1		1																																																																																																																25
AAAAC	21	8	5																																																																																																																					34
AAAAG	52	17	6	2	1																																																																																																																			78
AAAAT	474	163	73	28	8	1																																																																																																																		747
AAACA	9				1																																																																																																																			10
AAAGA	12	2		1																																																																																																																				15
AAAGC	2																																																																																																																							2
AAAGG	4																																																																																																																							4
AAATA	178	63	26	9	1	2	1																																																																																																																	280
AAATC	4	1																																																																																																																						5
AAATG	14	1																																																																																																																						15
AAATT	13	2			1																																																																																																																			16
AACAA	6			1																																																																																																																				7
AACAC	1	1																																																																																																																						2
AACAG	1																																																																																																																							1
AACAT		1																																																																																																																						1
AACCA	1																																																																																																																							1
AAGAA	19	1	1	1																																																																																																																				22
AAGAG	1																																																																																																																							1
AAGGA	1																																																																																																																							1
AATAA	182	34	15	3	1																																																																																																																			235
AATAC	6	1	2																																																																																																																					9
AATAG	2	1																																																																																																																						3
AATAT	101	33	9	2	4	4	2	4	2		1											1																																																																																																		163
AATGA	1	3																																																																																																																						4
AATGG	10	2	1		1																																																																																																																			14
AATTA	11	3																																																																																																																						14
AATTC	1	3																																																																																																																						4
AATTG	1																																																																																																																							1
AATTT	3																																																																																																																							3
ACAAA	8																																																																																																																							8
ACAAT		1																																																																																																																						1
ACAGA	1																																																																																																																							1
AGAAA	14	4	1	1																																																																																																																				20
AGAAC	1																																																																																																																							1
AGAAT	1																																																																																																																							1
AGGAA	1																																																																																																																							1
AGGGA			1																																																																																																																					1
ATAAA	115	34	9	4	1																																																																																																																			163
ATAAC	2																																																																																																																							2
ATAAG		2		1																																																																																																																				3
ATAAT	73	22	6	5	8		1	1	1				1	1	1			1		1	2	1																																																																																																		125
ATACA	2																																																																																																																							2
ATATA	449	58	26	11	8	6	2	1	1	1				1	1	1			1		2	1																																									1																																																									571
ATATC	5			1																																																																																																																				6
ATATG	4																																																																																																																							4
ATATT	64	16	7	2	1		4				1		1							1																																																																																																				97
ATCAA	1																																																																																																																							1
ATCAT	5																																																																																																																							5
ATCTT	1																																																																																																																							1
ATGAA	3																																																																																																																							3
ATGAG	1																																																																																																																							1
ATGGA		1		1	1																																																																																																																			3
ATGTT		1																																																																																																																						1
ATTAA	7		2																																																																																																																					9
ATTAG	1																																																																																																																							1
ATTAT	55	18	7		9			1		2																1																																																																																														93
ATTGT		1																																																																																																																						1
ATTTA	21	6	4																																																																																																																					31
ATTTC	18	5	1	1		1																																																																																																																		26
ATTTG	2	2	2			1																																																																																																																		7
ATTTT	164	33	18	2	1		1																																																																																																																	219
CAAAA	4	1		2																																																																																																																				7
CAAAT	1																																																																																																																							1
CAAGA	1																																																																																																																							1
CAATA		4																																																																																																																						4
CACAT	1																																																																																																																							1
CATAA	10																																																																																																																							10
CATAT	3																																																																																																																							3
CATCA	3																																																																																																																							3
CATTC	2																																																																																																																							2
CATTT	1	1																																																																																																																						2
CCACA	3																																																																																																																							3
CCTAA	2																																																																																																																							2
CTATT	1																																																																																																																							1
CTTAA			1																																																																																																																					1
CTTTC	1																																																																																																																							1
CTTTT	17	1	1																																																																																																																					19
GAAAA	52	6	1	1																																																																																																																				60
GAAAG	1																																																																																																																							1
GAAAT	4																																																																																																																							4
GAAGA	1																																																																																																																							1
GAATG	21	2	3	4	1		1			1																																																																																																														33
GAATT			1																																																																																																																					1
GATAA	1																																																																																																																							1
GATAT	2	2	2																																																																																																																					6
GCCAA	1																																																																																																																							1
GGAAA	1																																																																																																																							1
GGAAC				1																																																																																																																				1
GGAAT	6	8	3	3	3	1	3																																																																																																																	27
GTATT	1																																																																																																																							1
GTGGT	5																																																																																																																							5
GTGTT	1																																																																																																																							1
GTTTT	1										1																																																																																																													2
TAAAA	77	28	15	3	2		1																																																																																																																	126
TAAAG	1																																																																																																																							1
TAAAT	8	1	1		1																																																																																																																			11
TAATA	37	8	6	6	2													1										1																																																																																												61
TAATG	2																																																																																																																							2
TAATT	7	1																																																																																																																						8
TACAT	1																																																																																																																							1
TATAA	64	11	5	5	1		2				1																																																																																																													89
TATAC	2																																																																																																																							2
TATAT	369	59	16	2	6	1		1					1																																																																																																											455
TATCT	1																																																																																																																							1
TATGT	3																																																																																																																							3
TATTA	101	34	12	9	3	4		1	1	1	1		2	1			1				1																																																																																																			172
TATTC	8																																																																																																																							8
TATTG	3	3																																																																																																																						6
TATTT	153	41	18	6	2	3							1																																																																																																											224
TCAAA	2																																																																																																																							2
TCAAT				1																																																																																																																				1
TCATA	1																																																																																																																							1
TCATG			1																																																																																																																					1
TCCAT	1																																																																																																																							1
TCTTT	5	2																																																																																																																						7
TGAAA	1	1																																																																																																																						2
TGATA	1		1							1																																																																																																														3
TGATG	5																																																																																																																							5
TGATT	2																																																																																																																							2
TGGAA	6		3				1																																																																																																																	10
TGTAT	3	1		1																																																																																																																				5
TGTTA		1																																																																																																																						1
TGTTC	2																																																																																																																							2
TGTTT	9	3			1																																																																																																																			13
TTAAA	5	3	1																																																																																																																					9
TTAAT	6	4																																																																																																																						10
TTATA	68	23	13	2	5	3												1												1																																																																																										116
TTATT	217	79	31	5	6																																																																																																																			338
TTCAT	1																																																																																																																							1
TTCCT	2																																																																																																																							2
TTCTA		1																																																																																																																						1
TTCTT	24	2	2		1																																																																																																																			29
TTGAT	2																																																																																																																							2
TTGTA	1	1																																																																																																																						2
TTGTT	6	3																																																																																																																						9
TTTAA	14	4	1																																																																																																																					19
TTTAT	243	76	19	6	3	2																																																																																																																		349
TTTCA	5	3																																																																																																																						8
TTTCC	7		1																																																																																																																					8
TTTCT	26	5	2	3	1																																																																																																																			37
TTTGC	3																																																																																																																							3
TTTGT	10	3																																																																																																																						13
TTTTA	312	89	31	7	4					1		1		1																																																																																																										446
TTTTC	65	13	5	2		2																																																																																																																		87
TTTTG	32	9	4	2																																																																																																																				47
AAAAAC	6	1	1	1																																																																																																																				9
AAAAAG	46	8																																																																																																																						54
AAAAAT	88	23	3	1																																																																																																																				115
AAAACA	4																																																																																																																							4
AAAAGA	18	2	4		1																																																																																																																			25
AAAAGT	1																																																																																																																							1
AAAATA	43	11	3																																																																																																																					57
AAAATC	2																																																																																																																							2
AAAATG	7	2																																																																																																																						9
AAAATT	8	2		1																																																																																																																				11
AAACAA	2		1	1																																																																																																																				4
AAACAC			1																																																																																																																					1
AAACAT	5	1		1																																																																																																																				7
AAACCT	2																																																																																																																							2
AAACGG			1																																																																																																																					1
AAAGAA	8	4																																																																																																																						12
AAAGAC	1																																																																																																																							1
AAAGAG	3																																																																																																																							3
AAAGAT	5																																																																																																																							5
AAAGGA	1	1																																																																																																																						2
AAAGGT	1																																																																																																																							1
AAATAA	24	6	1																																																																																																																					31
AAATAC	2		1																																																																																																																					3
AAATAG			1																																																																																																																					1
AAATAT	57	11	4	1	2	1																																																																																																																		76
AAATGA		1																																																																																																																						1
AAATGG	1	1	1																																																																																																																					3
AAATGT	1																																																																																																																							1
AAATTA	1																																																																																																																							1
AAATTC		1																																																																																																																						1
AAATTT	1																																																																																																																							1
AACAAA	1																																																																																																																							1
AACAAG	1																																																																																																																							1
AACAAT	1																																																																																																																							1
AACACA	1																																																																																																																							1
AACATA	1		1																																																																																																																					2
AACATG	1																																																																																																																							1
AACCCT	3																																																																																																																							3
AACCTA	2																																																																																																																							2
AACTAT	1																																																																																																																							1
AAGAAA	15	3	1																																																																																																																					19
AAGACG	1																																																																																																																							1
AAGAGC			1																																																																																																																					1
AAGATG	2		1																																																																																																																					3
AAGGAA	1																																																																																																																							1
AAGGAG	1																																																																																																																							1
AAGGAT		2																																																																																																																						2
AATAAA	14		3																																																																																																																					17
AATAAC	7	1																																																																																																																						8
AATAAG	3																																																																																																																							3
AATAGA	1																																																																																																																							1
AATAGT	2																																																																																																																							2
AATATA	32	11	2			1																																																																																																																		46
AATATT	9																																																																																																																							9
AATCAG	1																																																																																																																							1
AATGAA	1	1																																																																																																																						2
AATGAT	6																																																																																																																							6
AATGTA	1																																																																																																																							1
AATGTT			1																																																																																																																					1
AATTAA	3																																																																																																																							3
AATTAC				1																																																																																																																				1
AATTAT	4		2																																																																																																																					6
AATTTT	2																																																																																																																							2
ACAAAA	2				1																																																																																																																			3
ACAAAC	2			1																																																																																																																				3
ACAAAT				1																																																																																																																				1
ACAAGA	3																																																																																																																							3
ACAATA	2	1																																																																																																																						3
ACAATT				1																																																																																																																				1
ACACAT	1																																																																																																																							1
ACAGAT	1																																																																																																																							1
ACATAA	2																																																																																																																							2
ACATAC		1																																																																																																																						1
ACATAT	3		1		1																																																																																																																			5
ACATGT		1																																																																																																																						1
ACATTA	2																																																																																																																							2
ACATTG		1																																																																																																																						1
ACCAAG	1																																																																																																																							1
ACCAGC	1																																																																																																																							1
ACCCTA	1																																																																																																																							1
ACTATT	3																																																																																																																							3
AGAAAA	4	3																																																																																																																						7
AGAAAC	1																																																																																																																							1
AGAAAT	1																																																																																																																							1
AGAATT	1																																																																																																																							1
AGACCC	4																																																																																																																							4
AGAGAA			1																																																																																																																					1
AGAGAC	1																																																																																																																							1
AGAGAT	3																																																																																																																							3
AGATAA	3																																																																																																																							3
AGATAT	1																																																																																																																							1
AGGAAA		1																																																																																																																						1
AGGAAG		1																																																																																																																						1
AGGAGC		1																																																																																																																						1
AGGTAA	1	3																																																																																																																						4
AGTAAT	1																																																																																																																							1
ATAAAA	14	3	3																																																																																																																					20
ATAAAC	7	3	2			1						1																																																																																																												14
ATAAAG	1	1																																																																																																																						2
ATAAAT	94	16	1	2	1			1																																																																																																																115
ATAACA		1																																																																																																																						1
ATAAGA	1																																																																																																																							1
ATAATC	1																																																																																																																							1
ATAATG	4	2			1																																																																																																																			7
ATAATT	13	1																																																																																																																						14
ATACAC	1	1																																																																																																																						2
ATACAT	3		1	1	1																																																																																																																			6
ATAGGA	1																																																																																																																							1
ATAGTA	2																																																																																																																							2
ATATAA	121	8	2	1																																																																																																																				132
ATATAC	6	5	2																																																																																																																					13
ATATAG	4																																																																																																																							4
ATATGC	2	1																																																																																																																						3
ATATGT	3	4	1		1																																																																																																																			9
ATATTA	1																																																																																																																							1
ATATTC	1	1																																																																																																																						2
ATATTG	1																																																																																																																							1
ATATTT	31	7	1	1																																																																																																																				40
ATCAAC	1		2																																																																																																																					3
ATCAGC	1																																																																																																																							1
ATCATG	1		1																																																																																																																					2
ATCATT	5	1																																																																																																																						6
ATCGTC	1																																																																																																																							1
ATCTAT	2						1																																																																																																																	3
ATCTTC	1																																																																																																																							1
ATCTTT	2																																																																																																																							2
ATGAAA	1		2																																																																																																																					3
ATGAAC				1																																																																																																																				1
ATGAAG	2																																																																																																																							2
ATGAAT	1	1																																																																																																																						2
ATGATA	7	2	1	1																																																																																																																				11
ATGATC	1																																																																																																																							1
ATGATT		1																																																																																																																						1
ATGGTG	1																																																																																																																							1
ATGGTT	1																																																																																																																							1
ATGTAA			1																																																																																																																					1
ATGTAT	1																																																																																																																							1
ATGTCC	1																																																																																																																							1
ATGTTC	1																																																																																																																							1
ATGTTT									1																																																																																																															1
ATTAAA	1																																																																																																																							1
ATTAAC	1																																																																																																																							1
ATTAAT	3																																																																																																																							3
ATTACC		3	1																																																																																																																					4
ATTACT	1		1																																																																																																																					2
ATTATA	6	2	2																																																																																																																					10
ATTATC	7	3																																																																																																																						10
ATTATG	1	1																																																																																																																						2
ATTGTA	1																																																																																																																							1
ATTGTT	3																																																																																																																							3
ATTTAA	2																																																																																																																							2
ATTTAC	10	4	1																																																																																																																					15
ATTTAT	21	6	1																																																																																																																					28
ATTTGC	2																																																																																																																							2
ATTTTA	3	1																																																																																																																						4
ATTTTC	9	2	1	1																																																																																																																				13
ATTTTT	51	6																																																																																																																						57
CAAAAA	2		1																																																																																																																					3
CAACAG	1																																																																																																																							1
CAAGAA	1																																																																																																																							1
CAATAA	1																																																																																																																							1
CAATAC	1																																																																																																																							1
CAATGA			1																																																																																																																					1
CATAAA	2	2	1																																																																																																																					5
CATATA	2																																																																																																																							2
CATCAC	2	1																																																																																																																						3
CATCCC	1																																																																																																																							1
CATCGT						1																																																																																																																		1
CATGAG	1																																																																																																																							1
CATTAA	1																																																																																																																							1
CATTAT	2																																																																																																																							2
CATTTA	1																																																																																																																							1
CATTTC	2				1																																																																																																																			3
CATTTG	1																																																																																																																							1
CATTTT	1		1																																																																																																																					2
CCATTA	1																																																																																																																							1
CCATTT	2																																																																																																																							2
CCTAAA	35	2	2																																																																																																																					39
CCTTCT		1																																																																																																																						1
CCTTTA	1																																																																																																																							1
CCTTTT	3	2																																																																																																																						5
CGATGA	2																																																																																																																							2
CTATTA	1																																																																																																																							1
CTTCAC	1																																																																																																																							1
CTTCAT	2																																																																																																																							2
CTTCCT	1																																																																																																																							1
CTTCGT	2																																																																																																																							2
CTTCTC	1	1																																																																																																																						2
CTTTTC		2		1																																																																																																																				3
CTTTTT	8	2																																																																																																																						10
GAAAAA	9	4	3																																																																																																																					16
GAAAAC	1																																																																																																																							1
GAAAAG	2	3																																																																																																																						5
GAAAAT	4	1																																																																																																																						5
GAAAGA	2	1																																																																																																																						3
GAAATA	1									1																																																																																																														2
GAAATT		1																																																																																																																						1
GAACAC				1																																																																																																																				1
GAACAT	1																																																																																																																							1
GAAGAC	2																																																																																																																							2
GAAGAG	1																																																																																																																							1
GAAGAT	1																																																																																																																							1
GAAGGG	1																																																																																																																							1
GAATAA	2																																																																																																																							2
GAATAT		1																																																																																																																						1
GACGAA	1																																																																																																																							1
GACGAT		3																																																																																																																						3
GACTCA		1																																																																																																																						1
GAGAAA			1																																																																																																																					1
GAGGAT		1																																																																																																																						1
GATAAA	3																																																																																																																							3
GATAAC	1		1																																																																																																																					2
GATAAT	2																																																																																																																							2
GATAGA	1	1																																																																																																																						2
GATCTT	1																																																																																																																							1
GATGAA	3																																																																																																																							3
GATGAC	1	2	1																																																																																																																					4
GCATTT	1																																																																																																																							1
GCTAAT			1																																																																																																																					1
GCTTGA				1																																																																																																																				1
GGAAAA	1																																																																																																																							1
GGAAAG		1																																																																																																																						1
GGAAAT				1																																																																																																																				1
GGAGAA	1																																																																																																																							1
GGAGGG	1																																																																																																																							1
GGTGGA		1																																																																																																																						1
GGTTTA	22																																																																																																																							22
GTAAAT		1																																																																																																																						1
GTAATA	3																																																																																																																							3
GTATAT	2																																																																																																																							2
GTATTA	1																																																																																																																							1
GTCAAC	1																																																																																																																							1
GTCTTC	2																																																																																																																							2
GTGAAG		1																																																																																																																						1
GTGTTA	1																																																																																																																							1
GTGTTG	2																																																																																																																							2
GTTAAA	1																																																																																																																							1
GTTATT	1																																																																																																																							1
GTTCTT	1																																																																																																																							1
TAAAAA	18	3	2																																																																																																																					23
TAAAAG		1																																																																																																																						1
TAAAAT	4																																																																																																																							4
TAAACA	3	1	1																																																																																																																					5
TAAATA	16	1	3																																																																																																																					20
TAAATG	1																																																																																																																							1
TAAATT	1																																																																																																																							1
TAACAA	2																																																																																																																							2
TAACTA	1																																																																																																																							1
TAATAC	1																																																																																																																							1
TAATAG		2		1																																																																																																																				3
TAATGA	3																																																																																																																							3
TAATGT	2																																																																																																																							2
TAATTA	2	5																																																																																																																						7
TAATTG	1																																																																																																																							1
TAATTT	1																																																																																																																							1
TACATA	2																																																																																																																							2
TACATT		1																																																																																																																						1
TACCAC		1																																																																																																																						1
TACTAT	4	1	2																																																																																																																					7
TACTTC	1																																																																																																																							1
TAGAAC		1																																																																																																																						1
TAGTAA	2	1																																																																																																																						3
TAGTGG		1																																																																																																																						1
TATAAA	20	3																																																																																																																						23
TATAAT	4																																																																																																																							4
TATACA	1																																																																																																																							1
TATATC	3																																																																																																																							3
TATATG	11	1	1																																																																																																																					13
TATATT	85	23	4	2																																																																																																																				114
TATCAT	2	1																																																																																																																						3
TATCTT					1																																																																																																																			1
TATGTA	3																																																																																																																							3
TATGTG			1																																																																																																																					1
TATGTT	2	1																																																																																																																						3
TATTAA	3	2																																																																																																																						5
TATTAC	14	4																																																																																																																						18
TATTCT		1																																																																																																																						1
TATTGT	1	1	2		1																																																																																																																			5
TATTTA	67	12	5	1																																																																																																																				85
TATTTC	1																																																																																																																							1
TATTTG	2	2																																																																																																																						4
TATTTT	39	7	5											1																																																																																																										52
TCAAAA	3																																																																																																																							3
TCACCA	1																																																																																																																							1
TCACCT	1																																																																																																																							1
TCATAA			1																																																																																																																					1
TCATCC	1																																																																																																																							1
TCATCT	1																																																																																																																							1
TCATTA	1																																																																																																																							1
TCATTT		1																																																																																																																						1
TCCATT	1																																																																																																																							1
TCCTCT	1		1																																																																																																																					2
TCCTTT	1	1																																																																																																																						2
TCGTCA		1																																																																																																																						1
TCTATA	1																																																																																																																							1
TCTCCT	1	1																																																																																																																						2
TCTCTA		2																																																																																																																						2
TCTCTT			1																																																																																																																					1
TCTTCA	3																																																																																																																							3
TCTTCC	3																																																																																																																							3
TCTTGA	1																																																																																																																							1
TCTTTA	2																																																																																																																							2
TCTTTC	3	1																																																																																																																						4
TCTTTG	2																																																																																																																							2
TCTTTT	8	1																																																																																																																						9
TGAAAA	1																																																																																																																							1
TGAAGA		1																																																																																																																						1
TGAATC	1																																																																																																																							1
TGATAA			1																																																																																																																					1
TGATGG	1																																																																																																																							1
TGATTA		1																																																																																																																						1
TGATTT	1																																																																																																																							1
TGCAAC	1																																																																																																																							1
TGGATG	1																																																																																																																							1
TGTAAA	1																																																																																																																							1
TGTATA	3	1																																																																																																																						4
TGTATT	2																																																																																																																							2
TGTGAG	1																																																																																																																							1
TGTGCT	1																																																																																																																							1
TGTGTA	2																																																																																																																							2
TGTGTT			1																																																																																																																					1
TGTTAT	1																																																																																																																							1
TGTTCA	1	1																																																																																																																						2
TGTTGA	1																																																																																																																							1
TGTTTA	1		1																																																																																																																					2
TGTTTT		2																																																																																																																						2
TTAAAA	2																																																																																																																							2
TTAAAT		1																																																																																																																						1
TTAATA	2																																																																																																																							2
TTAATG	2																																																																																																																							2
TTACTT		1																																																																																																																						1
TTAGGG	1																																																																																																																							1
TTATAT	18	4	2																																																																																																																					24
TTATCA	2																																																																																																																							2
TTATCC	2																																																																																																																							2
TTATCT	1																																																																																																																							1
TTATGA	1																																																																																																																							1
TTATTC	2																																																																																																																							2
TTATTG	6	2	1																																																																																																																					9
TTATTT	26	4	1	1																																																																																																																				32
TTCAAT		1																																																																																																																						1
TTCATA		1																																																																																																																						1
TTCATC	3	1																																																																																																																						4
TTCATG	1																																																																																																																							1
TTCATT	1																																																																																																																							1
TTCCTC	1																																																																																																																							1
TTCCTT	1																																																																																																																							1
TTCTAT	1																																																																																																																							1
TTCTCC	1	1																																																																																																																						2
TTCTTA	2																																																																																																																							2
TTCTTT	14	3																																																																																																																						17
TTGACC				1																																																																																																																				1
TTGATG		1																																																																																																																						1
TTGCTG	1																																																																																																																							1
TTGTAT	1																																																																																																																							1
TTGTCC	1																																																																																																																							1
TTGTGT		1																																																																																																																						1
TTGTTA	2	1																																																																																																																						3
TTGTTC	2			1																																																																																																																				3
TTGTTT		1																																																																																																																						1
TTTAAA	1																																																																																																																							1
TTTAAT	2																																																																																																																							2
TTTAGG	3																																																																																																																							3
TTTATA	75	1																																																																																																																						76
TTTATC	1																																																																																																																							1
TTTATG	8		3			1																																																																																																																		12
TTTATT	41	6	1																																																																																																																					48
TTTCAT		1																																																																																																																						1
TTTCCC		1																																																																																																																						1
TTTCCT	1	1		1																																																																																																																				3
TTTCTA	1																																																																																																																							1
TTTCTC	3																																																																																																																							3
TTTCTG		1																																																																																																																						1
TTTCTT	18	4	4	1																																																																																																																				27
TTTGTA	2	2																																																																																																																						4
TTTGTG		1																																																																																																																						1
TTTGTT	3			1	1																																																																																																																			5
TTTTAA	3	2																																																																																																																						5
TTTTAC	4																																																																																																																							4
TTTTAT	42	4																																																																																																																						46
TTTTCA	6		2		1																																																																																																																			9
TTTTCC	7	3																																																																																																																						10
TTTTCT	21	1	1																																																																																																																					23
TTTTGA	1																																																																																																																							1
TTTTGT	10	1		1																																																																																																																				12
TTTTTA	59	14	5																																																																																																																					78
TTTTTC	54	11	4	2																																																																																																																				71
TTTTTG	3	3		1																																																																																																																				7

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1544	1523	1351	1240	1068	995	909	819	715	589	451	379	284	247	221	216	181	132	102	79	43	45	22	13	13	11	8	3	3	1	1			3	1		1	1	1	2	2	1	1									1	1																																																	1	13224
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1																																																																																																					1
AC/GT	-	-	-	129	46	24	8	6	1	2	2	1	1																																																																																																											220
AG/CT	-	-	-	17	14	9	3	1	1		1		1																																																																																																											47
AT/AT	-	-	-	8998	5774	4456	4091	3712	3471	2991	2771	2349	2068	1750	1432	1088	965	753	550	415	308	204	126	93	50	47	22	8	10		5	1	1	1	1			1	1	1																																																																																48514
CG/CG	-	-	-	1																																																																																																																				1
AAC/GTT	-	-	90	48	16	16	8	9	12	4	2	2			2	2		1										1																																																																																												213
AAG/CTT	-	-	124	58	36	19	7	6	4	1														1																																																																																																256
AAT/ATT	-	-	2307	1284	919	629	506	309	189	127	68	52	27	22	16	3	3	2	2	2	2	1		1		2																																																																																														6473
ACC/GGT	-	-	6		2	1							1																																																																																																											10
ACG/CGT	-	-	4	3																																																																																																																				7
ACT/AGT	-	-	97	47	8	12	3	2	1				2			1		1	1	1																																																																																																				176
AGG/CCT	-	-	24	4	2	1	1																																																																																																																	32
ATC/ATG	-	-	239	90	42	11	10	7	2						1				1	1	1	1																																																																																																		406
AAAC/GTTT	-	46	14	8	8	3	1	1									1																							1																																																																																83
AAAG/CTTT	-	58	26	11	7	5	6			1		1	1													1																																																																																														117
AAAT/ATTT	-	2836	1398	697	330	141	82	30	20	10		2	3	3	1																																																																																																									5553
AACT/AGTT	-	2																																																																																																																						2
AAGC/CTTG	-	1																																																																																																																						1
AAGG/CCTT	-	3																																																																																																																						3
AAGT/ACTT	-	3			1																																																																																																																			4
AATC/ATTG	-	4	4	3																																																																																																																				11
AATG/ATTC	-	13	10	2	1	2																																																																																																																		28
AATT/AATT	-	29	5	5	1																																																																																																																			40
ACAT/ATGT	-	273	105	45	19	13	12	1	3	3		2	4	2	1		2	3		1		1		1	2			1		1					1			1					1		1																																	2																																										501
AGAT/ATCT	-	10	1																																																																																																																					11
AGCT/AGCT	-	2																																																																																																																						2
ATCC/ATGG	-	1		2																																																																																																																				3
ATGC/ATGC	-		1																																																																																																																					1
AAAAC/GTTTT	106	27	9	5	2						1																																																																																																													150
AAAAG/CTTTT	286	53	19	11	3	2																																																																																																																		374
AAAAT/ATTTT	2115	640	255	73	29	8	3			1		1	1	1																																																																																																										3127
AAACC/GGTTT	1																																																																																																																							1
AAAGC/CTTTG	5																																																																																																																							5
AAAGG/CCTTT	18		1																																																																																																																					19
AAAGT/ACTTT	1																																																																																																																							1
AAATC/ATTTG	14	3	2			1																																																																																																																		20
AAATG/ATTTC	48	14	1	1		1																																																																																																																		65
AAATT/AATTT	95	24	9		2																																																																																																																			130
AACAC/GTGTT	2	1																																																																																																																						3
AACAG/CTGTT	5																																																																																																																							5
AACAT/ATGTT	15	3																																																																																																																						18
AACCT/AGGTT	2																																																																																																																							2
AACGG/CCGTT				1																																																																																																																				1
AACTT/AAGTT			1																																																																																																																					1
AAGAC/CTTGT	1																																																																																																																							1
AAGAG/CTCTT	2																																																																																																																							2
AAGAT/ATCTT	3	2		1																																																																																																																				6
AAGCC/CTTGG	1																																																																																																																							1
AAGGG/CCCTT			1																																																																																																																					1
AATAC/ATTGT	16	12	2	1																																																																																																																				31
AATAG/ATTCT	12	2																																																																																																																						14
AATAT/ATATT	1381	282	107	44	47	18	11	9	5	4	4		5	3	2	1	1	3	1	2	5	3				1		1		1																																	1																																																									1942
AATCT/AGATT	1																																																																																																																							1
AATGG/ATTCC	46	13	10	8	6	1	5			1																																																																																																														90
AATGT/ACATT	3																																																																																																																							3
AATTC/AATTG	2	3	1	1																																																																																																																				7
ACACC/GGTGT	8																																																																																																																							8
ACATC/ATGTG	9																																																																																																																							9
ACATG/ATGTC			1																																																																																																																					1
ACTAT/AGTAT	2																																																																																																																							2
AGATG/ATCTC	1																																																																																																																							1
ATATC/ATATG	21	2	3	1						1																																																																																																														28
AAAAAC/GTTTTT	33	8	3	5	2																																																																																																																			51
AAAAAG/CTTTTT	223	46	17	3	1																																																																																																																			290
AAAAAT/ATTTTT	459	87	27	2										1																																																																																																										576
AAAACG/CGTTTT	1																																																																																																																							1
AAAAGG/CCTTTT	18	14		2																																																																																																																				34
AAAAGT/ACTTTT	5	2																																																																																																																						7
AAAATC/ATTTTG	7																																																																																																																							7
AAAATG/ATTTTC	31	9	6	1	1																																																																																																																			48
AAAATT/AATTTT	30	5		1																																																																																																																				36
AAACAC/GTGTTT	3	2	2	1																																																																																																																				8
AAACAG/CTGTTT	1	1																																																																																																																						2
AAACAT/ATGTTT	31	8	9	1		2			1			1																																																																																																												53
AAACCT/AGGTTT	64	2	2																																																																																																																					68
AAACGG/CCGTTT			1																																																																																																																					1
AAAGAC/CTTTGT	3																																																																																																																							3
AAAGAG/CTCTTT	11	2	3																																																																																																																					16
AAAGAT/ATCTTT	18	1			1																																																																																																																			20
AAAGGG/CCCTTT		2																																																																																																																						2
AAAGGT/ACCTTT	3	3																																																																																																																						6
AAAGTT/AACTTT	1																																																																																																																							1
AAATAC/ATTTGT	9	4	1	1																																																																																																																				15
AAATAG/ATTTCT	6		1							1																																																																																																														8
AAATAT/ATATTT	637	103	25	8	3	2		1																																																																																																																779
AAATGC/ATTTGC	4																																																																																																																							4
AAATGG/ATTTCC	6	1	1	1	1																																																																																																																			10
AAATGT/ACATTT	15	6	2																																																																																																																					23
AAATTC/AATTTG		1																																																																																																																						1
AAATTG/AATTTC		2																																																																																																																						2
AAATTT/AAATTT	5	1																																																																																																																						6
AACAAG/CTTGTT	8			1																																																																																																																				9
AACAAT/ATTGTT	27	7	3		1																																																																																																																			38
AACACC/GGTGTT	2																																																																																																																							2
AACACG/CGTGTT				1																																																																																																																				1
AACACT/AGTGTT	1																																																																																																																							1
AACAGC/CTGTTG	2																																																																																																																							2
AACATC/ATGTTG	2	1	2																																																																																																																					5
AACATG/ATGTTC	5	1		1																																																																																																																				7
AACATT/AATGTT	8		1																																																																																																																					9
AACCAT/ATGGTT	1																																																																																																																							1
AACCCT/AGGGTT	5																																																																																																																							5
AACGAT/ATCGTT	1		1																																																																																																																					2
AACGTC/ACGTTG	1																																																																																																																							1
AACTAG/AGTTCT		1																																																																																																																						1
AACTAT/AGTTAT	2																																																																																																																							2
AACTGC/AGTTGC	1																																																																																																																							1
AAGAAT/ATTCTT	10	1																																																																																																																						11
AAGACC/CTTGGT	1																																																																																																																							1
AAGACG/CGTCTT	8																																																																																																																							8
AAGAGC/CTCTTG			1																																																																																																																					1
AAGAGG/CCTCTT	7	1	1																																																																																																																					9
AAGATC/ATCTTG	2																																																																																																																							2
AAGATG/ATCTTC	18	2	1																																																																																																																					21
AAGCAC/CTTGTG	1																																																																																																																							1
AAGCTC/AGCTTG				1																																																																																																																				1
AAGGAC/CCTTGT	1																																																																																																																							1
AAGGAG/CCTTCT	5	4																																																																																																																						9
AAGGAT/ATCCTT	2	2																																																																																																																						4
AAGGGG/CCCCTT	1																																																																																																																							1
AAGGTC/ACCTTG				1																																																																																																																				1
AAGGTG/ACCTTC	2	1																																																																																																																						3
AAGTAG/ACTTCT	1																																																																																																																							1
AATACC/ATTGGT	1																																																																																																																							1
AATACT/AGTATT	2																																																																																																																							2
AATAGG/ATTCCT	1																																																																																																																							1
AATAGT/ACTATT	33	8	3	1																																																																																																																				45
AATATC/ATATTG	1																																																																																																																							1
AATATG/ATATTC	2	4																																																																																																																						6
AATATT/AATATT	18	2																																																																																																																						20
AATCAG/ATTCTG	1																																																																																																																							1
AATCAT/ATGATT	3	3	1																																																																																																																					7
AATCTG/AGATTC	1																																																																																																																							1
AATGAC/ATTGTC			1																																																																																																																					1
AATGAT/ATCATT	41	9	2	1	1																																																																																																																			54
AATGCT/AGCATT			1																																																																																																																					1
AATGGT/ACCATT	1	3	1																																																																																																																					5
AATGTC/ACATTG		1																																																																																																																						1
AATTAC/AATTGT	2			2																																																																																																																				4
AATTAG/AATTCT	1																																																																																																																							1
AATTAT/AATTAT	29	8	4																																																																																																																					41
ACACAT/ATGTGT	4	2	1																																																																																																																					7
ACACTC/AGTGTG	1																																																																																																																							1
ACAGAG/CTCTGT	1																																																																																																																							1
ACAGAT/ATCTGT	1																																																																																																																							1
ACATAT/ATATGT	40	11	6	1	3																																																																																																																			61
ACATCC/ATGTGG	1																																																																																																																							1
ACATGG/ATGTCC	1																																																																																																																							1
ACATGT/ACATGT		1																																																																																																																						1
ACCACT/AGTGGT		2																																																																																																																						2
ACCAGC/CTGGTG	1																																																																																																																							1
ACCATC/ATGGTG	5	1																																																																																																																						6
ACCCAG/CTGGGT	4																																																																																																																							4
ACCTCC/AGGTGG		1																																																																																																																						1
ACGATG/ATCGTC	4	6	1			1																																																																																																																		12
ACTCAG/AGTCTG		1																																																																																																																						1
AGAGAT/ATCTCT	4	3																																																																																																																						7
AGATAT/ATATCT	11						1																																																																																																																	12
AGCAGG/CCTGCT		1																																																																																																																						1
AGCATC/ATGCTG	1																																																																																																																							1
AGCATG/ATGCTC	1																																																																																																																							1
AGGATG/ATCCTC	1	1																																																																																																																						2
AGGGGG/CCCCCT	1																																																																																																																							1
ATATGC/ATATGC	2	1																																																																																																																						3
ATCATG/ATCATG	2		1																																																																																																																					3
ATCCCC/ATGGGG	1																																																																																																																							1
