Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_001861215.1/fasta/hub_GCA_001861215.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2774
Total size of examined sequences (bp):           37746053
Total number of identified SSRs:                 104581
Number of SSR containing sequences:              2504
Number of sequences containing more than 1 SSR:  2336
Number of SSRs present in compound formation:    44040


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	17511
2	59276
3	9396
4	7772
5	7449
6	3177

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	169	170	171	172	173	174	175	176	177	178	179	180	181	182	183	184	185	186	187	188	189	190	191	192	193	194	195	196	197	198	199	200	201	202	203	204	205	206	207	208	209	210	211	212	213	214	215	216	217	218	219	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	902	858	749	699	659	550	501	522	443	397	327	249	236	227	180	145	146	105	128	86	65	54	44	39	36	25	17	25	22	14	23	15	17	20	9	13	6	9	9	6	8		5	4	4	6	2	2	4	5	3	2	2	3	7	1	1		2	1	2	1		1		1	2	1		1		1	1							1	1	1										1												1																																																																																																	8655
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	999	901	826	680	657	616	560	459	485	382	307	274	207	198	180	147	128	114	114	83	66	82	48	38	24	28	27	23	20	11	11	10	15	7	8	4	7	7	6	7	5	5	4	2	7	5	3	4	3	5	5	1	5	3	4	2	2	2	2		4	2			1		2		1		1	1	1	1	1	2							1				1			1																																																																																																														1	8856
AC	-	-	-	34	10	12	7	1	1	2	1																																																																																																																																																																																																															68
AG	-	-	-	5	2	3		2	1	1																																																																																																																																																																																																																14
AT	-	-	-	6250	3909	3108	2794	2709	2616	2411	2222	2040	1789	1579	1218	929	765	580	420	363	249	160	111	69	39	24	28	13	9	6	5	4	4	1	1	2	1	1																																																																																																																																																																																				36429
CA	-	-	-	110	6	2	1	4				1																																																																																																																																																																																																														124
CT	-	-	-	6	2			2																																																																																																																																																																																																																		10
GA	-	-	-	4	7	5			1	1																																																																																																																																																																																																																18
GC	-	-	-	1																																																																																																																																																																																																																						1
GT	-	-	-	25	11	3	6	2																																																																																																																																																																																																																		47
TA	-	-	-	4713	2952	2105	1861	1612	1492	1366	1233	1108	918	804	606	424	349	261	180	138	88	61	28	28	25	12	9	5	7	1	1	3	3	2			1		1																																																																																																																																																																																			22397
TC	-	-	-	10	7	6		1	2	3																																																																																																																																																																																																																29
TG	-	-	-	107	20	5	3	1	1	2																																																																																																																																																																																																																139
AAC	-	-	31	10	6	7	9	5	3	1						1					1																																																																																																																																																																																																					74
AAG	-	-	25	10	6		1			2			1																																																																																																																																																																																																													45
AAT	-	-	531	334	280	176	123	86	57	18	18	11	6	1		3	2	2	2		1		1	1								1																																																																																																																																																																																										1654
ACA	-	-	11	9	3	2	1	1	1						1																																																																																																																																																																																																											29
ACC	-	-	3			1	1																																																																																																																																																																																																																			5
ACT	-	-	15	12	5	1	2		3																																																																																																																																																																																																																	38
AGA	-	-	14	3	2		1			1																																																																																																																																																																																																																21
AGG	-	-	5	1							2																																																																																																																																																																																																															8
AGT	-	-	14	12	1	1	4																						1																																																																																																																																																																																													33
ATA	-	-	609	250	209	140	116	64	48	36	20	12	12	6	3	4	3		1	1		2																																																																																																																																																																																																				1536
ATC	-	-	63	19	13	1	1	2	2																																																																																																																																																																																																																	101
ATG	-	-	53	23	10	4	5	3			1																																																																																																																																																																																																															99
ATT	-	-	446	331	148	131	92	77	43	27	6	9	6	4	4	2					1	1																																																																																																																																																																																																				1328
CAA	-	-	8	5	1		2	2	2			1																																																																																																																																																																																																														21
CAT	-	-	24	13	4	2	1																																																																																																																																																																																																																			44
CCA	-	-	3	2																																																																																																																																																																																																																						5
CCT	-	-	3																																																																																																																																																																																																																							3
CGA	-	-		1		1																																																																																																																																																																																																																				2
CGT	-	-	1																																																																																																																																																																																																																							1
CTA	-	-	7	3	1	1		1																			1																																																																																																																																																																																															14
CTC	-	-	1	3		1																																																																																																																																																																																																																				5
CTT	-	-	12	7	5	2	1			1																																																																																																																																																																																																																28
GAA	-	-	49	22	6	8	4	2					1				1																																																																																																																																																																																																									93
GAC	-	-	2	1																																																																																																																																																																																																																						3
GAG	-	-	3	2	1																																																																																																																																																																																																																					6
GAT	-	-	58	22	14	4	2	1									1																																																																																																																																																																																																									102
GGA	-	-	2		1																																																																																																																																																																																																																					3
GGC	-	-	2																																																																																																																																																																																																																							2
GGT	-	-		1																																																																																																																																																																																																																						1
GTA	-	-	49	11	1		4																																																																																																																																																																																																																			65
GTC	-	-		1																																																																																																																																																																																																																						1
GTG	-	-	1		1																																																																																																																																																																																																																					2
GTT	-	-	3	5	1		3									1											1																																																																																																																																																																																															14
TAA	-	-	264	154	107	77	68	42	33	11	9	10	5	1				2																																																																																																																																																																																																								783
TAC	-	-	45	20	4	2	1				2		1					1				1			1																																																																																																																																																																																																	78
TAG	-	-	24	10	2	2	1	1		1	1		1											1	1																																																																																																																																																																																																	45
TAT	-	-	519	315	233	152	126	82	63	19	13	5	4	3	5	1	1	3		1	1	1	1				1																																																																																																																																																																																															1549
TCA	-	-	69	17	9	6	3			1			1																																																																																																																																																																																																													106
TCC	-	-	6	2	1		1																																																																																																																																																																																																																			10
TCG	-	-	1	1		1																																																																																																																																																																																																																				3
TCT	-	-	25	9	3	4	4	2		2	1																																																																																																																																																																																																															50
TGA	-	-	28	9	4	2		1																																																																																																																																																																																																																		44
TGG	-	-	4																																																																																																																																																																																																																							4
TGT	-	-	13	5	7	3		1		1								1																																																																																																																																																																																																								31
TTA	-	-	450	223	128	117	82	59	36	23	11	6	10	3	3		2	1	3			2	1																																																																																																																																																																																																			1160
TTC	-	-	46	19	7	5	3								1																																																																																																																																																																																																											81
TTG	-	-	25	12	7	7	4	4	2	2	3																																																																																																																																																																																																															66
AAAC	-	23	5	1	2																																																																																																																																																																																																																					31
AAAG	-	9	6	10	1									1		1																																																																																																																																																																																																										28
AAAT	-	570	298	168	86	40	22	10	5	1	2																																																																																																																																																																																																															1202
AACA	-	3																																																																																																																																																																																																																								3
AAGA	-	24	3	1		1																																																																																																																																																																																																																				29
AAGC	-	2																																																																																																																																																																																																																								2
AAGT	-	2																																																																																																																																																																																																																								2
AATA	-	390	212	103	50	36	17	17	4	1	1	1	1	3	1				1																																																																																																																																																																																																							838
AATC	-	2																																																																																																																																																																																																																								2
AATG	-	3	3	2	2																																																																																																																																																																																																																					10
AATT	-	5	4	1																																																																																																																																																																																																																						10
ACAA	-	1	4																																																																																																																																																																																																																							5
ACAT	-	30	14	5	3	1	2	2	1														1		1			1																																																																																																																																																																																														61
AGAA	-	5	1	1		1	2																																																																																																																																																																																																																			10
AGTA	-	1																																																																																																																																																																																																																								1
ATAA	-	542	227	134	57	30	22	8	5	3	3	2																																																																																																																																																																																																														1033
ATAC	-	74	42	16	7	1	3	5	2		1		1									1	1																						1						1																																																																																																																																																																							156
ATAG	-	2																																																																																																																																																																																																																								2
ATGA	-	2	1	1																																																																																																																																																																																																																						4
ATGC	-	1																																																																																																																																																																																																																								1
ATGT	-	16	8	6	1	1		1						1																							1																																																																																																																																																																																					35
ATTA	-	8		2																																																																																																																																																																																																																						10
ATTC	-	6	4	4	1									2																																																																																																																																																																																																												17
ATTG	-			1																																																																																																																																																																																																																						1
ATTT	-	302	164	83	40	14	12	4	2	1																																																																																																																																																																																																																622
CAAA	-	3	1	2	1		1		1																																																																																																																																																																																																																	9
CAAT	-		1		1																																																																																																																																																																																																																					2
CATA	-	23	4	5	1	1				1																																																																																																																																																																																																																35
CCTT	-	1																																																																																																																																																																																																																								1
CTTA	-		1																																																																																																																																																																																																																							1
CTTC	-	1																																																																																																																																																																																																																								1
CTTT	-		1																																																																																																																																																																																																																							1
GAAA	-	11	8	1	2												1																																																																																																																																																																																																									23
GAAG	-	1																																																																																																																																																																																																																								1
GAAT	-	3	1	1																																																																																																																																																																																																																						5
GATA	-	2																																																																																																																																																																																																																								2
GGAT	-			1																																																																																																																																																																																																																						1
GTAT	-	30	15	1	5	1		2		4	1																				1									1																																																																																																																																																																																		61
GTTT	-	4									1																																																																																																																																																																																																															5
TAAA	-	217	89	28	15	6	1	1	2																																																																																																																																																																																																																	359
TAAT	-	9	3	1																																																																																																																																																																																																																						13
TACA	-	23	14	7	3																		1								2					1				1																																																																																																																																																																																		52
TAGA	-	1																																																																																																																																																																																																																								1
TAGC	-	1																																																																																																																																																																																																																								1
TAGT	-	1																																																																																																																																																																																																																								1
TATC	-	3	2																																																																																																																																																																																																																							5
TATG	-	90	28	19	6	2	1	7	4	2	2		1	2																							1		1																																																																																																																																																																																			166
TATT	-	682	301	140	65	24	16	4	5	3	3	1		3																																																																																																																																																																																																												1247
TCCA	-	1																																																																																																																																																																																																																								1
TCTT	-	1	1	1	2																																																																																																																																																																																																																					5
TGAA	-	1	1	1																																																																																																																																																																																																																						3
TGAT	-	1			1																																																																																																																																																																																																																					2
TGTA	-	26	11	8	3		1	1																				1																																																																																																																																																																																														51
TGTT	-	6	1																																																																																																																																																																																																																							7
TTAA	-	3	6																																																																																																																																																																																																																							9
TTAG	-	1																																																																																																																																																																																																																								1
TTAT	-	360	152	99	44	23	9	1	1			2																																																																																																																																																																																																														691
TTCA	-	1					1																																																																																																																																																																																																																			2
TTCC	-	1																																																																																																																																																																																																																								1
TTCT	-	5	4	5	2								1																																																																																																																																																																																																													17
TTGA	-	1	1																																																																																																																																																																																																																							2
TTGC	-	1																																																																																																																																																																																																																								1
TTGT	-	2		2				1																																																																																																																																																																																																																		5
TTTA	-	391	169	79	64	47	22	8	1	1		1	1		1																																																																																																																																																																																																											785
TTTC	-	23	9	2		1		2	1						1																																																																																																																																																																																																											39
TTTG	-	18	8	6	2		2										1	2			1			1	1																																																																																																																																																																																																	42
AAAAC	32	9	7		1										1																																																																																																																																																																																																											50
AAAAG	84	15	7	1						1																																																																																																																																																																																																																108
AAAAT	605	204	95	33	10	6	1		1																																																																																																																																																																																																																	955
AAACA	9		1																																																																																																																																																																																																																							10
AAAGA	15	2																																																																																																																																																																																																																								17
AAAGC	1																																																																																																																																																																																																																									1
AAAGG	4			1																																																																																																																																																																																																																						5
AAATA	199	67	24	10	2	3				1																																																																																																																																																																																																																306
AAATC	4	3	1				1																																																																																																																																																																																																																			9
AAATG	11	5		1																																																																																																																																																																																																																						17
AAATT	20	4	3					1																																																																																																																																																																																																																		28
AACAA	3	1																																																																																																																																																																																																																								4
AACAT	1																																																																																																																																																																																																																									1
AACCA		1																																																																																																																																																																																																																								1
AAGAA	22	5	2																																																																																																																																																																																																																							29
AAGAT	1																																																																																																																																																																																																																									1
AAGGA	1																																																																																																																																																																																																																									1
AAGGG	1																																																																																																																																																																																																																									1
AATAA	202	53	29	4	1		1			2																																																																																																																																																																																																																292
AATAC	6	6		1																																																																																																																																																																																																																						13
AATAG	3	1																																																																																																																																																																																																																								4
AATAT	116	30	14	6	5	2	1		2	1	1		1					1			1							1																																																																																																																																																																																														182
AATGA		1																																																																																																																																																																																																																								1
AATGG	13	4	1		1		1	3								1																																																																																																																																																																																																										24
AATTA	6	2																																																																																																																																																																																																																								8
AATTC	1	2																																																																																																																																																																																																																								3
AATTG		3																																																																																																																																																																																																																								3
AATTT	5	1																																																																																																																																																																																																																								6
ACAAA	5	1			1																																																																																																																																																																																																																					7
ACAAG	1																																																																																																																																																																																																																									1
ACAAT		1		1																																																																																																																																																																																																																						2
ACCAC		1																																																																																																																																																																																																																								1
AGAAA	12	3	3	1																																																																																																																																																																																																																						19
AGAAT	3																																																																																																																																																																																																																									3
AGGAA	1																																																																																																																																																																																																																									1
AGTAT	1																																																																																																																																																																																																																									1
ATAAA	186	35	13	3	2		1		1					1																																																																																																																																																																																																												242
ATAAC	4																																																																																																																																																																																																																									4
ATAAG	2	1																																																																																																																																																																																																																								3
ATAAT	104	19	5	10	2	1	1				1				1	2							2	1							1																																																																																																																																																																																											150
ATACA	1																																																																																																																																																																																																																									1
ATACT	1																																																																																																																																																																																																																									1
ATAGA			1																																																																																																																																																																																																																							1
ATATA	500	78	19	24	8	5	3	2	1	1	1	3	2	1	1			1	1										1																																																																																																																																																																																													652
ATATC	5	3																																																																																																																																																																																																																								8
ATATG	4	1																																																																																																																																																																																																																								5
ATATT	74	19	11	5		3	1								1																																																																																																																																																																																																											114
ATCAA	3	1																																																																																																																																																																																																																								4
ATCAT			1	1		1																																																																																																																																																																																																																				3
ATCTC		1																																																																																																																																																																																																																								1
ATGAA	3	1	1																																																																																																																																																																																																																							5
ATGAG		2																																																																																																																																																																																																																								2
ATGAT	3																																																																																																																																																																																																																									3
ATGGA					1																																																																																																																																																																																																																					1
ATGTG	2																																																																																																																																																																																																																									2
ATGTT	1																																																																																																																																																																																																																									1
ATTAA	5	4	1																																																																																																																																																																																																																							10
ATTAG	1																																																																																																																																																																																																																									1
ATTAT	83	18	9	2	2	4				1	2	2				1													1																																																																																																																																																																																													125
ATTCC	3	1		2			4	2		1	1					1								1																																																																																																																																																																																																		16
ATTCT	1																																																																																																																																																																																																																									1
ATTGT		1																																																																																																																																																																																																																								1
ATTTA	22	2		1		1																																																																																																																																																																																																																				26
ATTTC	15	8																																																																																																																																																																																																																								23
ATTTG	1			1																																																																																																																																																																																																																						2
ATTTT	178	42	20	8	5	1																																																																																																																																																																																																																				254
CAAAA	4	3	1	1																																																																																																																																																																																																																						9
CAAAC	1																																																																																																																																																																																																																									1
CAAAT			1																																																																																																																																																																																																																							1
CAATA	1	2																																																																																																																																																																																																																								3
CAATT	1																																																																																																																																																																																																																									1
CACAT	1																																																																																																																																																																																																																									1
CATAA	6																																																																																																																																																																																																																									6
CATAT	1	2																																																																																																																																																																																																																								3
CATCA	22																																																																																																																																																																																																																									22
CATTA	2																																																																																																																																																																																																																									2
CATTC	5	5	1	1				1																																																																																																																																																																																																																		13
CATTT	2	1																																																																																																																																																																																																																								3
CCACA	4																																																																																																																																																																																																																									4
CCATT	2			1								1																																																																																																																																																																																																														4
CTATT	1																																																																																																																																																																																																																									1
CTTAA		2																																																																																																																																																																																																																								2
CTTTA	1																																																																																																																																																																																																																									1
CTTTC	4		1																																																																																																																																																																																																																							5
CTTTT	13	4		2									1		1																																																																																																																																																																																																											21
GAAAA	56	8	6	1																																																																																																																																																																																																																						71
GAAAG	1																																																																																																																																																																																																																									1
GAAAT	7																																																																																																																																																																																																																									7
GAATG	14	6	2	1		2							1																																																																																																																																																																																																													26
GAATT		1																																																																																																																																																																																																																								1
GACAA	1																																																																																																																																																																																																																									1
GATAA	1																																																																																																																																																																																																																									1
GATAT		1																																																																																																																																																																																																																								1
GCCAA	1																																																																																																																																																																																																																									1
GGAAA	1																																																																																																																																																																																																																									1
GGAAT	6	9	1	3	3	1	3		1	2																																																																																																																																																																																																																29
GTATA	1																																																																																																																																																																																																																									1
GTGGT	2																																																																																																																																																																																																																									2
GTGTT	2																																																																																																																																																																																																																									2
GTTCA	1																																																																																																																																																																																																																									1
GTTCC		1																																																																																																																																																																																																																								1
GTTTG	1	2																																																																																																																																																																																																																								3
GTTTT	1		3	1																																																																																																																																																																																																																						5
TAAAA	103	35	16	1	2	1				1																																																																																																																																																																																																																159
TAAAT	19	1		1																																																																																																																																																																																																																						21
TAATA	50	12	16	4		4				1	2	3				1																																																																																																																																																																																																										93
TAATG	2																																																																																																																																																																																																																									2
TAATT	5	1																																																																																																																																																																																																																								6
TATAA	68	16	9		1			2																			1																																																																																																																																																																																															97
TATAG	1																																																																																																																																																																																																																									1
TATAT	406	63	18	11	3	3	2				2	1	1		1	3		1	1			1	3			1					2																																																																																																																																																																																											523
TATCA	1		1																																																																																																																																																																																																																							2
TATCT	1																																																																																																																																																																																																																									1
TATGA			2																																																																																																																																																																																																																							2
TATGT	9																																																																																																																																																																																																																									9
TATTA	111	46	14	12	3		4	1	2	1	1			1																																																																																																																																																																																																												196
TATTC	5																																																																																																																																																																																																																									5
TATTG	5	3	3																																																																																																																																																																																																																							11
TATTT	184	53	25	16	3	1	1	1					1																																																																																																																																																																																																													285
TCAAA	1																																																																																																																																																																																																																									1
TCATG		1																																																																																																																																																																																																																								1
TCATT	3																																																																																																																																																																																																																									3
TCCAT	16	8	1	1																																																																																																																																																																																																																						26
TCTCT	1																																																																																																																																																																																																																									1
TCTGT		1																																																																																																																																																																																																																								1
TCTTA	1																																																																																																																																																																																																																									1
TCTTT	15		1																																																																																																																																																																																																																							16
TGAAA	2	2	1																																																																																																																																																																																																																							5
TGAAG	1																																																																																																																																																																																																																									1
TGATA	6	1	1																																																																																																																																																																																																																							8
TGATG	10																																																																																																																																																																																																																									10
TGGAA	3	3	5	2		2						1		1																																																																																																																																																																																																												17
TGTAT	1																																																																																																																																																																																																																									1
TGTGT		1																																																																																																																																																																																																																								1
TGTTA		1																																																																																																																																																																																																																								1
TGTTC	1																																																																																																																																																																																																																									1
TGTTG	1																																																																																																																																																																																																																									1
TGTTT	13	4	2																																																																																																																																																																																																																							19
TTAAA	4	4																																																																																																																																																																																																																								8
TTAAT	10	3																																																																																																																																																																																																																								13
TTATA	89	34	4		3		2	1				1					1																																																																																																																																																																																																									135
TTATC		1																																																																																																																																																																																																																								1
TTATT	279	88	48	15	2	2		3																																																																																																																																																																																																																		437
TTCAT	1																																																																																																																																																																																																																									1
TTCCA	6	2	2																																																																																																																																																																																																																							10
TTCCC	1																																																																																																																																																																																																																									1
TTCCT	2																																																																																																																																																																																																																									2
TTCTA	1																																																																																																																																																																																																																									1
TTCTG	1																																																																																																																																																																																																																									1
TTCTT	23	2	3				1																																																																																																																																																																																																																			29
TTGTA	2	3																																																																																																																																																																																																																								5
TTGTT	3	5	1																																																																																																																																																																																																																							9
TTTAA	10	2																																																																																																																																																																																																																								12
TTTAT	257	114	33	7	2	3	1																																																																																																																																																																																																																			417
TTTCA	3	1	1																																																																																																																																																																																																																							5
TTTCC	5	1																																																																																																																																																																																																																								6
TTTCT	23	3	1	3																																																																																																																																																																																																																						30
TTTGA	2																																																																																																																																																																																																																									2
TTTGC	3																																																																																																																																																																																																																									3
TTTGT	13	2	2	1					1						1																																																																																																																																																																																																											20
TTTTA	353	115	62	13	8																																																																																																																																																																																																																					551
TTTTC	111	20	12	1		1																																																																																																																																																																																																																				145
TTTTG	28	10	4																																																																																																																																																																																																																							42
AAAAAC	10	2																																																																																																																																																																																																																								12
AAAAAG	45	6								1																																																																																																																																																																																																																52
AAAAAT	123	26	5																																																																																																																																																																																																																							154
AAAACA	5	3																																																																																																																																																																																																																								8
AAAAGA	23	3											1																																																																																																																																																																																																													27
AAAAGG	2																																																																																																																																																																																																																									2
AAAATA	63	17	4																																																																																																																																																																																																																							84
AAAATC	1																																																																																																																																																																																																																									1
AAAATG	5	4																																																																																																																																																																																																																								9
AAAATT	12	3																																																																																																																																																																																																																								15
AAACAT	1	1	2																																																																																																																																																																																																																							4
AAAGAA	9		2																																																																																																																																																																																																																							11
AAAGAC	1																																																																																																																																																																																																																									1
AAAGAG	2	1																																																																																																																																																																																																																								3
AAAGAT	4	3																																																																																																																																																																																																																								7
AAAGGT		1																																																																																																																																																																																																																								1
AAAGTA		1																																																																																																																																																																																																																								1
AAATAA	44	4	2	1																																																																																																																																																																																																																						51
AAATAC	1																																																																																																																																																																																																																									1
AAATAG	1																																																																																																																																																																																																																									1
AAATAT	73	27	1		1																																																																																																																																																																																																																					102
AAATCA	1																																																																																																																																																																																																																									1
AAATGA	1																																																																																																																																																																																																																									1
AAATGC	1	1																																																																																																																																																																																																																								2
AAATGG	3																																																																																																																																																																																																																									3
AAATGT	4																																																																																																																																																																																																																									4
AAATTA	4																																																																																																																																																																																																																									4
AAATTT	4																																																																																																																																																																																																																									4
AACAAA	1	5																																																																																																																																																																																																																								6
AACAAG		1																																																																																																																																																																																																																								1
AACAAT	4	1						1	1																																																																																																																																																																																																																	7
AACATC		1																																																																																																																																																																																																																								1
AACATG	1	1	1																																																																																																																																																																																																																							3
AACTAT	1																																																																																																																																																																																																																									1
AAGAAA	23	6	1			1																																																																																																																																																																																																																				31
AAGAGG	1																																																																																																																																																																																																																									1
AAGGAA	1																																																																																																																																																																																																																									1
AAGGAC				1																																																																																																																																																																																																																						1
AAGGAG	2																																																																																																																																																																																																																									2
AAGGAT	1																																																																																																																																																																																																																									1
AAGGGG	1																																																																																																																																																																																																																									1
AAGGTC				1																																																																																																																																																																																																																						1
AATAAA	30	5		1																																																																																																																																																																																																																						36
AATAAC	7	2	2																																																																																																																																																																																																																							11
AATAAG	4																																																																																																																																																																																																																									4
AATAGT	1	1																																																																																																																																																																																																																								2
AATATA	40	13																																																																																																																																																																																																																								53
AATATT	2																																																																																																																																																																																																																									2
AATCAT			1																																																																																																																																																																																																																							1
AATGAA		1	1																																																																																																																																																																																																																							2
AATGAT	4																																																																																																																																																																																																																									4
AATGGA	2	1																																																																																																																																																																																																																								3
AATGGG					1																																																																																																																																																																																																																					1
AATGGT	2	1																																																																																																																																																																																																																								3
AATGTA		2																																																																																																																																																																																																																								2
AATGTC		1																																																																																																																																																																																																																								1
AATGTG	1																																																																																																																																																																																																																									1
AATTAA	1																																																																																																																																																																																																																									1
AATTAT	22	3																																																																																																																																																																																																																								25
AATTTC		1																																																																																																																																																																																																																								1
AATTTT	2																																																																																																																																																																																																																									2
ACAAAA	2		2																																																																																																																																																																																																																							4
ACAAAC	1																																																																																																																																																																																																																									1
ACAAAG	2																																																																																																																																																																																																																									2
ACAAAT	1	3	3																																																																																																																																																																																																																							7
ACAAGA	1	1																																																																																																																																																																																																																								2
ACAATA	2	2																																																																																																																																																																																																																								4
ACAATT		1																																																																																																																																																																																																																								1
ACACAT		1																																																																																																																																																																																																																								1
ACAGAT		1																																																																																																																																																																																																																								1
ACATAA	2																																																																																																																																																																																																																									2
ACATAC	1																																																																																																																																																																																																																									1
ACATAT	9	1		1																																																																																																																																																																																																																						11
ACATCC					1																																																																																																																																																																																																																					1
ACATGT	1																																																																																																																																																																																																																									1
ACCAGA		1																																																																																																																																																																																																																								1
ACCAGC		5																																																																																																																																																																																																																								5
ACTAAC		1																																																																																																																																																																																																																								1
ACTATT	4	1																																																																																																																																																																																																																								5
AGAAAA	6	6	1																																																																																																																																																																																																																							13
AGAAAC	1																																																																																																																																																																																																																									1
AGAAAT	1																																																																																																																																																																																																																									1
AGAAGG	1																																																																																																																																																																																																																									1
AGAATA		1																																																																																																																																																																																																																								1
AGAATT	1																																																																																																																																																																																																																									1
AGACCC	1																																																																																																																																																																																																																									1
AGAGAA	5		1																																																																																																																																																																																																																							6
AGATAA			1																																																																																																																																																																																																																							1
AGATAT	1		2																																																																																																																																																																																																																							3
AGGAAA	2	1																																																																																																																																																																																																																								3
AGGAAC	1																																																																																																																																																																																																																									1
AGGATA	1																																																																																																																																																																																																																									1
AGGTAA	1																																																																																																																																																																																																																									1
AGGTGG	1																																																																																																																																																																																																																									1
AGGTTC							1																																																																																																																																																																																																																			1
AGGTTG		1																																																																																																																																																																																																																								1
AGTAAT	1		1																																																																																																																																																																																																																							2
AGTATT	1																																																																																																																																																																																																																									1
AGTTGC	1																																																																																																																																																																																																																									1
ATAAAA	27	2																																																																																																																																																																																																																								29
ATAAAC	9	3		1	1																																																																																																																																																																																																																					14
ATAAAG	1																																																																																																																																																																																																																									1
ATAAAT	126	19	8		1																																																																																																																																																																																																																					154
ATAATC	1																																																																																																																																																																																																																									1
ATAATG	9	2																																																																																																																																																																																																																								11
ATAATT	21	3																																																																																																																																																																																																																								24
ATACAA	1	1																																																																																																																																																																																																																								2
ATACAC							1																																																																																																																																																																																																																			1
ATACAT	5		1	3			2																																																																																																																																																																																																																			11
ATAGAT										1																																																																																																																																																																																																																1
ATAGTA	4																																																																																																																																																																																																																									4
ATATAA	116	10	1		1																																																																																																																																																																																																																					128
ATATAC	8	2	1																																																																																																																																																																																																																							11
ATATAG	1																																																																																																																																																																																																																									1
ATATGA	1																																																																																																																																																																																																																									1
ATATGC	2																																																																																																																																																																																																																									2
ATATGT	5	3																																																																																																																																																																																																																								8
ATATTA	3																																																																																																																																																																																																																									3
ATATTC	2																																																																																																																																																																																																																									2
ATATTG	1																																																																																																																																																																																																																									1
ATATTT	36	4					1																																																																																																																																																																																																																			41
ATCAAC	2																																																																																																																																																																																																																									2
ATCATG			1																																																																																																																																																																																																																							1
ATCATT	4	1																																																																																																																																																																																																																								5
ATCGTC	1																																																																																																																																																																																																																									1
ATCTAT	1																																																																																																																																																																																																																									1
ATCTTC	1																																																																																																																																																																																																																									1
ATCTTT	1																																																																																																																																																																																																																									1
ATGAAC	1																																																																																																																																																																																																																									1
ATGAAG	1																																																																																																																																																																																																																									1
ATGATA	9			1		1																																																																																																																																																																																																																				11
ATGATC	1	1																																																																																																																																																																																																																								2
ATGATT	1																																																																																																																																																																																																																									1
ATGGTT	1																																																																																																																																																																																																																									1
ATGTAA	3		1																																																																																																																																																																																																																							4
ATGTAT	5	1																																																																																																																																																																																																																								6
ATGTTC	3				1																																																																																																																																																																																																																					4
ATGTTT	2		2			1																																																																																																																																																																																																																				5
ATTAAA	1																																																																																																																																																																																																																									1
ATTAAT	14																																																																																																																																																																																																																									14
ATTACA	1																																																																																																																																																																																																																									1
ATTACT	1	2																																																																																																																																																																																																																								3
ATTAGC		1																																																																																																																																																																																																																								1
ATTATA	9	2																																																																																																																																																																																																																								11
ATTATC	11	1																																																																																																																																																																																																																								12
ATTATG	2																																																																																																																																																																																																																									2
ATTCCT	1																																																																																																																																																																																																																									1
ATTGTA	1																																																																																																																																																																																																																									1
ATTGTT	4																																																																																																																																																																																																																									4
ATTTAA	1	1																																																																																																																																																																																																																								2
ATTTAC	6	5																																																																																																																																																																																																																								11
ATTTAT	30	8	1	1																																																																																																																																																																																																																						40
ATTTCC			1																																																																																																																																																																																																																							1
ATTTGC	2																																																																																																																																																																																																																									2
ATTTTA	12	1																																																																																																																																																																																																																								13
ATTTTC	12	3				1																																																																																																																																																																																																																				16
ATTTTG	1																																																																																																																																																																																																																									1
ATTTTT	59	5			1																																																																																																																																																																																																																					65
CAAAAA	2																																																																																																																																																																																																																									2
CAACAC	2																																																																																																																																																																																																																									2
CAACAG	1																																																																																																																																																																																																																									1
CAATAA			1																																																																																																																																																																																																																							1
CATAAA	1	1																																																																																																																																																																																																																								2
CATATA	1	1																																																																																																																																																																																																																								2
CATCAA	3																																																																																																																																																																																																																									3
CATCAC	2	1																																																																																																																																																																																																																								3
CATCCA	2																																																																																																																																																																																																																									2
CATCCC	1																																																																																																																																																																																																																									1
CATCGT	1																																																																																																																																																																																																																									1
CATGAA	1																																																																																																																																																																																																																									1
CATGAG	1																																																																																																																																																																																																																									1
CATGAT	1																																																																																																																																																																																																																									1
CATGTT			1																																																																																																																																																																																																																							1
CATTAA	2		1																																																																																																																																																																																																																							3
CATTAT	1	1																																																																																																																																																																																																																								2
CATTTA	2																																																																																																																																																																																																																									2
CATTTC	1	1					1								1																																																																																																																																																																																																											4
CATTTT				1																																																																																																																																																																																																																						1
CCACCT	1		1																																																																																																																																																																																																																							2
CCATTA	10	2			1																																																																																																																																																																																																																					13
CCATTT	6	1	1																																																																																																																																																																																																																							8
CCGGCT	1																																																																																																																																																																																																																									1
CCTAAA	1																																																																																																																																																																																																																									1
CCTCAA	2																																																																																																																																																																																																																									2
CCTTCC	1																																																																																																																																																																																																																									1
CCTTTA	1																																																																																																																																																																																																																									1
CCTTTT																												1																																																																																																																																																																																														1
CGTCTA	1																																																																																																																																																																																																																									1
CTATTA		1																																																																																																																																																																																																																								1
CTGATG	1																																																																																																																																																																																																																									1
CTTACT	1																																																																																																																																																																																																																									1
CTTCAC	2																																																																																																																																																																																																																									2
CTTCAT	1																																																																																																																																																																																																																									1
CTTCCT		1																																																																																																																																																																																																																								1
CTTCGT		1																																																																																																																																																																																																																								1
CTTCTC		1																																																																																																																																																																																																																								1
CTTGTT	1																																																																																																																																																																																																																									1
CTTTTA		1																																																																																																																																																																																																																								1
CTTTTC	1																																																																																																																																																																																																																									1
CTTTTT	19	1																																																																																																																																																																																																																								20
GAAAAA	23	8	3	7																																																																																																																																																																																																																						41
GAAAAG	8		1																																																																																																																																																																																																																							9
GAAAAT	8	2	2																																																																																																																																																																																																																							12
GAAAGA	3																																																																																																																																																																																																																									3
GAAATA	1			3																																																																																																																																																																																																																						4
GAACAC			1																																																																																																																																																																																																																							1
GAACCT			1																																																																																																																																																																																																																							1
GAACTT	1																																																																																																																																																																																																																									1
GAAGAC	5																																																																																																																																																																																																																									5
GAAGAG	3																																																																																																																																																																																																																									3
GAAGAT	4																																																																																																																																																																																																																									4
GAAGGA			1																																																																																																																																																																																																																							1
GAAGGT	1																																																																																																																																																																																																																									1
GAATAA	1																																																																																																																																																																																																																									1
GACAAA		1																																																																																																																																																																																																																								1
GAGAAA	1	1																																																																																																																																																																																																																								2
GAGATG	1																																																																																																																																																																																																																									1
GAGGAA	3																																																																																																																																																																																																																									3
GAGGAT	2																																																																																																																																																																																																																									2
GATAAA	2																																																																																																																																																																																																																									2
GATAAT	3																																																																																																																																																																																																																									3
GATAGA	2																																																																																																																																																																																																																									2
GATATA	2																																																																																																																																																																																																																									2
GATCTT	1																																																																																																																																																																																																																									1
GATGAA	4																																																																																																																																																																																																																									4
GATGAC	4																																																																																																																																																																																																																									4
GGAAAA	1		1																																																																																																																																																																																																																							2
GGAAAT		1																																																																																																																																																																																																																								1
GGACAT	2																																																																																																																																																																																																																									2
GGTCTT		1																																																																																																																																																																																																																								1
GGTGGA	1																																																																																																																																																																																																																									1
GTAAAA	2																																																																																																																																																																																																																									2
GTAAAT	2	1																																																																																																																																																																																																																								3
GTAATA	1	2																																																																																																																																																																																																																								3
GTATAT	4		1																																																																																																																																																																																																																							5
GTATGT	1																																																																																																																																																																																																																									1
GTATTA	1																																																																																																																																																																																																																									1
GTATTG	1																																																																																																																																																																																																																									1
GTCTTC	1																																																																																																																																																																																																																									1
GTGATG	2																																																																																																																																																																																																																									2
GTGATT	2																																																																																																																																																																																																																									2
GTGTTA		1																																																																																																																																																																																																																								1
GTTAAA	1																																																																																																																																																																																																																									1
GTTATC		1																																																																																																																																																																																																																								1
GTTTAT		1	1																																																																																																																																																																																																																							2
TAAAAA	18	10																																																																																																																																																																																																																								28
TAAAAG	1																																																																																																																																																																																																																									1
TAAAAT	4		1																																																																																																																																																																																																																							5
TAAACA	1		1																																																																																																																																																																																																																							2
TAAAGA	1																																																																																																																																																																																																																									1
TAAATA	26	4	2																																																																																																																																																																																																																							32
TAAATG	1			1																																																																																																																																																																																																																						2
TAAATT	1																																																																																																																																																																																																																									1
TAACAA								1																																																																																																																																																																																																																		1
TAACTA	1																																																																																																																																																																																																																									1
TAATAG	9	1			1																																																																																																																																																																																																																					11
TAATAT	1																																																																																																																																																																																																																									1
TAATGA	7																																																																																																																																																																																																																									7
TAATGG		1																																																																																																																																																																																																																								1
TAATGT	1																																																																																																																																																																																																																									1
TAATTA	5	1																																																																																																																																																																																																																								6
TAATTG		1																																																																																																																																																																																																																								1
TACATA	4																																																																																																																																																																																																																									4
TACATT				1																																																																																																																																																																																																																						1
TACTAT	3	3																																																																																																																																																																																																																								6
TACTTC	1																																																																																																																																																																																																																									1
TAGATA	1																																																																																																																																																																																																																									1
TAGTAA			1																																																																																																																																																																																																																							1
TAGTGG	1	3																																																																																																																																																																																																																								4
TAGTTC		1																																																																																																																																																																																																																								1
TATAAA	21	3		1																																																																																																																																																																																																																						25
TATAAT	6	3																																																																																																																																																																																																																								9
TATACA	3																																																																																																																																																																																																																									3
TATATC	1										1																																																																																																																																																																																																															2
TATATG	11	1	2		1																																																																																																																																																																																																																					15
TATATT	98	35	5	2																																																																																																																																																																																																																						140
TATCAT		1	1																																																																																																																																																																																																																							2
TATCGT	2																																																																																																																																																																																																																									2
TATCTA	1																																																																																																																																																																																																																									1
TATCTT	2	1																																																																																																																																																																																																																								3
TATGTA	1																																																																																																																																																																																																																									1
TATGTG			1	1																																																																																																																																																																																																																						2
TATGTT	10		1																																																																																																																																																																																																																							11
TATTAA	4	2																																																																																																																																																																																																																								6
TATTAC	11	1																																																																																																																																																																																																																								12
TATTGC	1																																																																																																																																																																																																																									1
TATTGT	2			1																																																																																																																																																																																																																						3
TATTTA	79	23	8																																																																																																																																																																																																																							110
TATTTC		1																																																																																																																																																																																																																								1
TATTTG	2	2																																																																																																																																																																																																																								4
TATTTT	39	11	1																																																																																																																																																																																																																							51
TCAAAA	1																																																																																																																																																																																																																									1
TCAAGC				2																																																																																																																																																																																																																						2
TCACAC	1																																																																																																																																																																																																																									1
TCACCA	1																																																																																																																																																																																																																									1
TCATAA			1																																																																																																																																																																																																																							1
TCATAT	1																																																																																																																																																																																																																									1
TCATCG	1																																																																																																																																																																																																																									1
TCATCT	3																																																																																																																																																																																																																									3
TCATTA	1	2																																																																																																																																																																																																																								3
TCATTG			1																																																																																																																																																																																																																							1
TCATTT	3	1																																																																																																																																																																																																																								4
TCCATT	1																																																																																																																																																																																																																									1
TCCTCT		1																																																																																																																																																																																																																								1
TCCTGC			1																																																																																																																																																																																																																							1
TCCTTC		1																																																																																																																																																																																																																								1
TCGTCA			1																																																																																																																																																																																																																							1
TCGTCT	4																																																																																																																																																																																																																									4
TCTATA	7																																																																																																																																																																																																																									7
TCTCTA	1																																																																																																																																																																																																																									1
TCTGAG		1																																																																																																																																																																																																																								1
TCTTAT	1																																																																																																																																																																																																																									1
TCTTCA	6																																																																																																																																																																																																																									6
TCTTCC	4																																																																																																																																																																																																																									4
TCTTGA	1																																																																																																																																																																																																																									1
TCTTGT			1																																																																																																																																																																																																																							1
TCTTTA	5					1																																																																																																																																																																																																																				6
TCTTTC	2	1	1																																																																																																																																																																																																																							4
TCTTTT	12	2																																																																																																																																																																																																																								14
TGAAAA	1																																																																																																																																																																																																																									1
TGAATC	1																																																																																																																																																																																																																									1
TGACGA			1																																																																																																																																																																																																																							1
TGACGT	1																																																																																																																																																																																																																									1
TGAGGT	1																																																																																																																																																																																																																									1
TGATAA	1																																																																																																																																																																																																																									1
TGATGT		1																																																																																																																																																																																																																								1
TGATTA	1	1																																																																																																																																																																																																																								2
TGATTT	1																																																																																																																																																																																																																									1
TGCTCT						1																																																																																																																																																																																																																				1
TGCTGG		3																																																																																																																																																																																																																								3
TGGATG	1																																																																																																																																																																																																																									1
TGGTGC		1																																																																																																																																																																																																																								1
TGTAAA	26	4																																																																																																																																																																																																																								30
TGTATA	10	1																																																																																																																																																																																																																								11
TGTATG				1																																																																																																																																																																																																																						1
TGTATT	4																																																																																																																																																																																																																									4
TGTGAG	1																																																																																																																																																																																																																									1
TGTGTA	1																																																																																																																																																																																																																									1
TGTGTT	1																																																																																																																																																																																																																									1
TGTTAT	2																																																																																																																																																																																																																									2
TGTTCA			1																																																																																																																																																																																																																							1
TGTTCT	1																																																																																																																																																																																																																									1
TGTTGA	2																																																																																																																																																																																																																									2
TGTTTA		2																																																																																																																																																																																																																								2
TGTTTG		2																																																																																																																																																																																																																								2
TGTTTT	1	1	1																																																																																																																																																																																																																							3
TTAAAT	1																																																																																																																																																																																																																									1
TTAATA	1																																																																																																																																																																																																																									1
TTAATG	4																																																																																																																																																																																																																									4
TTACAT	1																																																																																																																																																																																																																									1
TTACTA	1																																																																																																																																																																																																																									1
TTATAT	25	2																																																																																																																																																																																																																								27
TTATCA	1																																																																																																																																																																																																																									1
TTATCT	2																																																																																																																																																																																																																									2
TTATGA	1																																																																																																																																																																																																																									1
TTATTC	2																																																																																																																																																																																																																									2
TTATTG	3	3																																																																																																																																																																																																																								6
TTATTT	34	8																																																																																																																																																																																																																								42
TTCATA		1																																																																																																																																																																																																																								1
TTCATC	3																																																																																																																																																																																																																									3
TTCATG	1																																																																																																																																																																																																																									1
TTCCAT														1																																																																																																																																																																																																												1
TTCGTT		1																																																																																																																																																																																																																								1
TTCTAT	1																																																																																																																																																																																																																									1
TTCTCC	1	1																																																																																																																																																																																																																								2
TTCTGA			1																																																																																																																																																																																																																							1
TTCTTA	7																																																																																																																																																																																																																									7
TTCTTT	16	1	1	2																																																																																																																																																																																																																						20
TTGAAA		1																																																																																																																																																																																																																								1
TTGATG	1																																																																																																																																																																																																																									1
TTGATT	2																																																																																																																																																																																																																									2
TTGTAA		1																																																																																																																																																																																																																								1
TTGTGT	1																																																																																																																																																																																																																									1
TTGTTA	2																																																																																																																																																																																																																									2
TTGTTT	1	1																																																																																																																																																																																																																								2
TTTAAA	1																																																																																																																																																																																																																									1
TTTAAT	6	1																																																																																																																																																																																																																								7
TTTAGG	1																																																																																																																																																																																																																									1
TTTATA	115	4	2	1																																																																																																																																																																																																																						122
TTTATC	4			1																																																																																																																																																																																																																						5
TTTATG	11	5	1																																																																																																																																																																																																																							17
TTTATT	39	10																																																																																																																																																																																																																								49
TTTCAT	1	1																																																																																																																																																																																																																								2
TTTCCC	1																																																																																																																																																																																																																									1
TTTCCT	5	1																																																																																																																																																																																																																								6
TTTCTA	3	1		1																																																																																																																																																																																																																						5
TTTCTG	1																																																																																																																																																																																																																									1
TTTCTT	18	6	1																																																																																																																																																																																																																							25
TTTGAT	2																																																																																																																																																																																																																									2
TTTGTA	1	1																																																																																																																																																																																																																								2
TTTGTC	1																																																																																																																																																																																																																									1
TTTGTG			1																																																																																																																																																																																																																							1
TTTGTT		1		1																																																																																																																																																																																																																						2
TTTTAA	2	1																																																																																																																																																																																																																								3
TTTTAC	2																																																																																																																																																																																																																									2
TTTTAT	50	9																																																																																																																																																																																																																								59
TTTTCA	4	1																																																																																																																																																																																																																								5
TTTTCC	3																																																																																																																																																																																																																									3
TTTTCT	14	2	1																																																																																																																																																																																																																							17
TTTTGA	1																																																																																																																																																																																																																									1
TTTTGT	3		1																																																																																																																																																																																																																							4
TTTTTA	84	28	2	1	1																																																																																																																																																																																																																					116
TTTTTC	40	25	6	1																																																																																																																																																																																																																						72
TTTTTG	9	2	1																																																																																																																																																																																																																							12

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	169	170	171	172	173	174	175	176	177	178	179	180	181	182	183	184	185	186	187	188	189	190	191	192	193	194	195	196	197	198	199	200	201	202	203	204	205	206	207	208	209	210	211	212	213	214	215	216	217	218	219	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1901	1759	1575	1379	1316	1166	1061	981	928	779	634	523	443	425	360	292	274	219	242	169	131	136	92	77	60	53	44	48	42	25	34	25	32	27	17	17	13	16	15	13	13	5	9	6	11	11	5	6	7	10	8	3	7	6	11	3	3	2	4	1	6	3		1	1	1	4	1	1	1	1	2	2	1	1	2				1	1	1	1				1			1		1												1																																																																																																1	17511
AC/GT	-	-	-	276	47	22	17	8	2	4	1	1																																																																																																																																																																																																														378
AG/CT	-	-	-	25	18	14		5	4	5																																																																																																																																																																																																																71
AT/AT	-	-	-	10963	6861	5213	4655	4321	4108	3777	3455	3148	2707	2383	1824	1353	1114	841	600	501	337	221	139	97	64	36	37	18	16	7	6	7	7	3	1	2	2	1	1																																																																																																																																																																																			58826
CG/CG	-	-	-	1																																																																																																																																																																																																																						1
AAC/GTT	-	-	91	46	25	19	19	13	8	4	3	1			1	2		1			1						1																																																																																																																																																																																															235
AAG/CTT	-	-	171	70	29	19	14	4		6	1		2		1		1																																																																																																																																																																																																									318
AAT/ATT	-	-	2819	1607	1105	793	607	410	280	134	77	53	43	18	15	10	8	8	6	2	3	6	3	1			1					1																																																																																																																																																																																										8010
ACC/GGT	-	-	11	3	1	1	1																																																																																																																																																																																																																			17
ACG/CGT	-	-	4	4		2																																																																																																																																																																																																																				10
ACT/AGT	-	-	154	68	14	7	12	2	3	1	3		2					1				1		1	2		1		1																																																																																																																																																																																													273
AGG/CCT	-	-	20	8	3	1	1				2																																																																																																																																																																																																															35
ATC/ATG	-	-	295	103	54	19	12	7	2	1	1		1				1																																																																																																																																																																																																									496
CCG/CGG	-	-	2																																																																																																																																																																																																																							2
AAAC/GTTT	-	60	19	11	5		3	1	1		1						1	2			1			1	1																																																																																																																																																																																																	107
AAAG/CTTT	-	78	33	21	7	3	2	2	1				1	1	1	1	1																																																																																																																																																																																																									152
AAAT/ATTT	-	3454	1612	834	421	220	121	53	25	10	9	7	2	6	2				1																																																																																																																																																																																																							6777
AACT/AGTT	-	2																																																																																																																																																																																																																								2
AAGC/CTTG	-	3																																																																																																																																																																																																																								3
AAGG/CCTT	-	4																																																																																																																																																																																																																								4
AAGT/ACTT	-	3	1																																																																																																																																																																																																																							4
AATC/ATTG	-	4	2	1	2																																																																																																																																																																																																																					9
AATG/ATTC	-	16	10	9	3		1							2																																																																																																																																																																																																												41
AATT/AATT	-	25	13	4																																																																																																																																																																																																																						42
ACAT/ATGT	-	312	136	67	29	7	7	18	7	7	4		2	3								1	3		1			2			3					1	2		1	2					1						1																																																																																																																																																																							617
AGAT/ATCT	-	8	2																																																																																																																																																																																																																							10
AGCT/AGCT	-	1																																																																																																																																																																																																																								1
ATCC/ATGG	-	1		1																																																																																																																																																																																																																						2
ATGC/ATGC	-	1																																																																																																																																																																																																																								1
AAAAC/GTTTT	111	35	21	3	2				1						2																																																																																																																																																																																																											175
AAAAG/CTTTT	374	62	35	9		1	1			1			1		1																																																																																																																																																																																																											485
AAAAT/ATTTT	2546	806	365	110	37	17	5	4	2	4			1	1																																																																																																																																																																																																												3898
AAACC/GGTTT	2	3																																																																																																																																																																																																																								5
AAAGC/CTTTG	4																																																																																																																																																																																																																									4
AAAGG/CCTTT	19	1	1	1																																																																																																																																																																																																																						22
AAAGT/ACTTT	1																																																																																																																																																																																																																									1
AAATC/ATTTG	11	4	2	1			1																																																																																																																																																																																																																			19
AAATG/ATTTC	47	19	3	1																																																																																																																																																																																																																						70
AAATT/AATTT	106	24	4	2		1		1																																																																																																																																																																																																																		138
AACAC/GTGTT	3	1																																																																																																																																																																																																																								4
AACAG/CTGTT	2	1																																																																																																																																																																																																																								3
AACAT/ATGTT	21	1																																																																																																																																																																																																																								22
AACGG/CCGTT		1																																																																																																																																																																																																																								1
AACTG/AGTTC	1																																																																																																																																																																																																																									1
AACTT/AAGTT		2																																																																																																																																																																																																																								2
AAGAC/CTTGT	2																																																																																																																																																																																																																									2
AAGAG/CTCTT	1																																																																																																																																																																																																																									1
AAGAT/ATCTT	6	2																																																																																																																																																																																																																								8
AAGCC/CTTGG	1																																																																																																																																																																																																																									1
AAGGG/CCCTT	2																																																																																																																																																																																																																									2
AAGTG/ACTTC	1																																																																																																																																																																																																																									1
AATAC/ATTGT	16	16	3	2																																																																																																																																																																																																																						37
AATAG/ATTCT	14	1	1																																																																																																																																																																																																																							16
AATAT/ATATT	1601	335	119	74	27	22	14	6	5	5	10	10	4	2	4	7	1	3	2		1	1	5	1		1	1	1	2		3																																																																																																																																																																																											2267
AATCT/AGATT	1																																																																																																																																																																																																																									1
AATGG/ATTCC	68	38	13	11	5	5	8	6	1	3	1	2	1	1		2								1																																																																																																																																																																																																		166
AATGT/ACATT	4																																																																																																																																																																																																																									4
AATTC/AATTG	2	6																																																																																																																																																																																																																								8
ACACC/GGTGT	6	1																																																																																																																																																																																																																								7
ACATC/ATGTG	35																																																																																																																																																																																																																									35
ACATG/ATGTC		1																																																																																																																																																																																																																								1
ACTAT/AGTAT	4																																																																																																																																																																																																																									4
AGATG/ATCTC		3																																																																																																																																																																																																																								3
ATATC/ATATG	20	8	5	1		1																																																																																																																																																																																																																				35
AAAAAC/GTTTTT	34	15	5	1																																																																																																																																																																																																																						55
AAAAAG/CTTTTT	248	66	16	10		1				1			1																																																																																																																																																																																																													343
AAAAAT/ATTTTT	610	135	14	3	2																																																																																																																																																																																																																					764
AAAACG/CGTTTT		1																																																																																																																																																																																																																								1
AAAAGG/CCTTTT	23	2	2																									1																																																																																																																																																																																														28
AAAAGT/ACTTTT	5	2																																																																																																																																																																																																																								7
AAAATC/ATTTTG	10																																																																																																																																																																																																																									10
AAAATG/ATTTTC	35	13	3	1		1																																																																																																																																																																																																																				53
AAAATT/AATTTT	44	6	1																																																																																																																																																																																																																							51
AAACAC/GTGTTT	3	2	1																																																																																																																																																																																																																							6
AAACAG/CTGTTT	2																																																																																																																																																																																																																									2
AAACAT/ATGTTT	37	13	8	1	1	1																																																																																																																																																																																																																				61
AAACCT/AGGTTT	2																																																																																																																																																																																																																									2
AAAGAC/CTTTGT	4	1																																																																																																																																																																																																																								5
AAAGAG/CTCTTT	13	3	2																																																																																																																																																																																																																							18
AAAGAT/ATCTTT	22	4	1	1		1																																																																																																																																																																																																																				29
AAAGGG/CCCTTT	1																																																																																																																																																																																																																									1
AAAGGT/ACCTTT	2	1																																																																																																																																																																																																																								3
AAAGTT/AACTTT	1																																																																																																																																																																																																																									1
AAATAC/ATTTGT	10	7	3																																																																																																																																																																																																																							20
AAATAG/ATTTCT	7	2		4																																																																																																																																																																																																																						13
AAATAT/ATATTT	785	152	28	5	3		1																																																																																																																																																																																																																			974
AAATGC/ATTTGC	3	1																																																																																																																																																																																																																								4
AAATGG/ATTTCC	13	4	2				1							1	1																																																																																																																																																																																																											22
AAATGT/ACATTT	45	12	1	2																																																																																																																																																																																																																						60
AAATTG/AATTTC		2																																																																																																																																																																																																																								2
AAATTT/AAATTT	8	1																																																																																																																																																																																																																								9
AACAAG/CTTGTT	3	2	1																																																																																																																																																																																																																							6
AACAAT/ATTGTT	26	8	3	1				2	1																																																																																																																																																																																																																	41
AACACC/GGTGTT	2																																																																																																																																																																																																																									2
AACACG/CGTGTT			1																																																																																																																																																																																																																							1
AACACT/AGTGTT		2																																																																																																																																																																																																																								2
AACAGC/CTGTTG	1																																																																																																																																																																																																																									1
AACAGG/CCTGTT	1																																																																																																																																																																																																																									1
AACATC/ATGTTG	8	2																																																																																																																																																																																																																								10
AACATG/ATGTTC	7	1	3		1																																																																																																																																																																																																																					12
AACATT/AATGTT	7		1																																																																																																																																																																																																																							8
AACCAG/CTGGTT		1																																																																																																																																																																																																																								1
AACCAT/ATGGTT	1																																																																																																																																																																																																																									1
AACCTC/AGGTTG	3	1																																																																																																																																																																																																																								4
AACCTG/AGGTTC			1				1																																																																																																																																																																																																																			2
AACGAT/ATCGTT	2	1																																																																																																																																																																																																																								3
AACGTC/ACGTTG	1																																																																																																																																																																																																																									1
AACTAG/AGTTCT		1																																																																																																																																																																																																																								1
AACTAT/AGTTAT	2																																																																																																																																																																																																																									2
AACTGC/AGTTGC	1																																																																																																																																																																																																																									1
AACTTG/AAGTTC	1																																																																																																																																																																																																																									1
AAGAAT/ATTCTT	15	1																																																																																																																																																																																																																								16
AAGACC/CTTGGT		1																																																																																																																																																																																																																								1
AAGACG/CGTCTT	10	1																																																																																																																																																																																																																								11
AAGAGC/CTCTTG						1																																																																																																																																																																																																																				1
AAGAGG/CCTCTT	11	2																																																																																																																																																																																																																								13
AAGAGT/ACTCTT	1																																																																																																																																																																																																																									1
AAGATC/ATCTTG	2																																																																																																																																																																																																																									2
AAGATG/ATCTTC	23																																																																																																																																																																																																																									23
AAGCTC/AGCTTG				2																																																																																																																																																																																																																						2
AAGGAC/CCTTGT				1																																																																																																																																																																																																																						1
AAGGAG/CCTTCT	4	3	1																																																																																																																																																																																																																							8
AAGGAT/ATCCTT	2																																																																																																																																																																																																																									2
AAGGGG/CCCCTT	2																																																																																																																																																																																																																									2
AAGGTC/ACCTTG				1																																																																																																																																																																																																																						1
AAGGTG/ACCTTC	3																																																																																																																																																																																																																									3
AAGTAG/ACTTCT	1																																																																																																																																																																																																																									1
AATACC/ATTGGT	1																																																																																																																																																																																																																									1
AATACT/AGTATT	2																																																																																																																																																																																																																									2
AATAGC/ATTGCT	1																																																																																																																																																																																																																									1
AATAGG/ATTCCT	1																																																																																																																																																																																																																									1
AATAGT/ACTATT	36	12	2		1																																																																																																																																																																																																																					51
AATATC/ATATTG	1																																																																																																																																																																																																																									1
AATATG/ATATTC	4	1																																																																																																																																																																																																																								5
AATATT/AATATT	25	2																																																																																																																																																																																																																								27
AATCAC/ATTGTG	2																																																																																																																																																																																																																									2
AATCAG/ATTCTG			1																																																																																																																																																																																																																							1
AATCAT/ATGATT	6	1	2																																																																																																																																																																																																																							9
AATCTG/AGATTC	1																																																																																																																																																																																																																									1
AATGAC/ATTGTC			1																																																																																																																																																																																																																							1
AATGAT/ATCATT	51	8	1	1		1																																																																																																																																																																																																																				62
AATGCT/AGCATT		1																																																																																																																																																																																																																								1
AATGGG/ATTCCC					1																																																																																																																																																																																																																					1
AATGGT/ACCATT	12	4			1																																																																																																																																																																																																																					17
AATGTC/ACATTG		1																																																																																																																																																																																																																								1
AATGTG/ACATTC	1																																																																																																																																																																																																																									1
AATTAC/AATTGT	2	3																																																																																																																																																																																																																								5
AATTAG/AATTCT	1																																																																																																																																																																																																																									1
AATTAT/AATTAT	63	12																																																																																																																																																																																																																								75
ACACAT/ATGTGT	3	1	1	2			1																																																																																																																																																																																																																			8
ACACTC/AGTGTG	2																																																																																																																																																																																																																									2
ACAGAT/ATCTGT		1																																																																																																																																																																																																																								1
ACATAT/ATATGT	66	10	5	4	1		2																																																																																																																																																																																																																			88
ACATCC/ATGTGG	3				1																																																																																																																																																																																																																					4
ACATGG/ATGTCC	2																																																																																																																																																																																																																									2
ACATGT/ACATGT	1																																																																																																																																																																																																																									1
ACCACT/AGTGGT	1	3																																																																																																																																																																																																																								4
ACCAGC/CTGGTG		9																																																																																																																																																																																																																								9
ACCATC/ATGGTG	5	1																																																																																																																																																																																																																								6
ACCCAG/CTGGGT	1																																																																																																																																																																																																																									1
ACCTCC/AGGTGG	3		1																																																																																																																																																																																																																							4
ACGATG/ATCGTC	7		2																																																																																																																																																																																																																							9
ACGTAG/ACGTCT	1																																																																																																																																																																																																																									1
ACTCAG/AGTCTG		1																																																																																																																																																																																																																								1
AGAGAT/ATCTCT	3																																																																																																																																																																																																																									3
AGATAT/ATATCT	15		2							1	1																																																																																																																																																																																																															19
AGATGG/ATCTCC	1																																																																																																																																																																																																																									1
AGCAGG/CCTGCT			1																																																																																																																																																																																																																							1
AGCATC/ATGCTG	1																																																																																																																																																																																																																									1
AGCATG/ATGCTC	1																																																																																																																																																																																																																									1
AGCCGG/CCGGCT	1																																																																																																																																																																																																																									1
AGGATG/ATCCTC	2																																																																																																																																																																																																																									2
ATATGC/ATATGC	2																																																																																																																																																																																																																									2
ATCATG/ATCATG	2	1	1																																																																																																																																																																																																																							4
ATCCCC/ATGGGG	1																																																																																																																																																																																																																									1
