Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_001861195.1/fasta/hub_GCA_001861195.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1726
Total size of examined sequences (bp):           29458568
Total number of identified SSRs:                 90187
Number of SSR containing sequences:              1658
Number of sequences containing more than 1 SSR:  1615
Number of SSRs present in compound formation:    38459


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	14102
2	52127
3	7851
4	6828
5	6570
6	2709

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	169	170	171	172	173	174	175	176	177	178	179	180	181	182	183	184	185	186	187	188	189	190	191	192	193	194	195	196	197	198	199	200	201	202	203	204	205	206	207	208	209	210	211	212	213	214	215	216	217	218	219	220	221	222	223	224	225	226	227	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	939	765	683	611	565	535	477	432	389	301	277	186	161	133	136	98	79	82	60	37	20	19	13	9	3	5	3	4	3	1		3	2		2		1	2		1					1																																																																											1																																																																																									7039
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	879	802	713	639	543	541	508	438	393	289	238	213	135	113	121	103	92	69	79	51	28	19	10	18	8	1	3	2		3			2	1	1	1								1																																1										1							1																												1																																							1																																																1	7063
AC	-	-	-	42	15	11	4	2	2	1																																																																																																																																																																																																																								77
AG	-	-	-	3	8	7	1	1			1																																																																																																																																																																																																																							21
AT	-	-	-	5596	3589	2919	2602	2446	2249	2128	1870	1616	1417	1225	936	733	691	523	425	308	201	138	111	60	35	29	25	5	5	9	4			2					1																																																																																																																																																																																											31898
CA	-	-	-	38	11	5	2	5																																																																																																																																																																																																																										61
CT	-	-	-	2	5			1																																																																																																																																																																																																																										8
GA	-	-	-	2	6			1																																																																																																																																																																																																																										9
GC	-	-	-		1																																																																																																																																																																																																																													1
GT	-	-	-	16	8	5	1	2	1																																																																																																																																																																																																																									33
TA	-	-	-	4218	2767	2021	1650	1465	1388	1120	1037	870	739	617	505	387	310	242	201	120	96	63	47	17	21	11	5	2	1		1	1	1	1																																																																																																																																																																																																19924
TC	-	-	-	14	6	3								1																																																																																																																																																																																																																				24
TG	-	-	-	39	14	13	1	3		1																																																																																																																																																																																																																								71
AAC	-	-	24	16	11	3	6	2	3			2	1	1		1																						1																																																																																																																																																																																												71
AAG	-	-	15	11	2	1				1	1																																																																																																																																																																																																																							31
AAT	-	-	469	319	184	184	111	68	47	25	18	6	4	1	4			1															1																																																																																																																																																																																																	1442
ACA	-	-	6	2	2	2		1			1		3																																																																																																																																																																																																																					17
ACC	-	-	1				1																																																																																																																																																																																																																											2
ACG	-	-	3																																																																																																																																																																																																																															3
ACT	-	-	8	6	3	1	1	1	1																																																																																																																																																																																																																									21
AGA	-	-	8	10	2	1																																																																																																																																																																																																																												21
AGT	-	-	10	8	2					1																																																																																																																																																																																																																								21
ATA	-	-	489	247	173	111	83	58	27	35	14	10	11	1	1	6	1	2																																																																																																																																																																																																																1269
ATC	-	-	63	19	8	3	4		1	1												1																																																																																																																																																																																																												100
ATG	-	-	43	24	8	3	2	1									1																																																																																																																																																																																																																	82
ATT	-	-	377	228	153	114	72	65	23	17	12	3	7	1	3	2						1																																																																																																																																																																																																												1078
CAA	-	-	4	3	2	3	1		1	2	1																																																																																																																																																																																																																							17
CAT	-	-	18	5	2	1	2	1			1		1																																																																																																																																																																																																																					31
CCA	-	-	1	1																																																																																																																																																																																																																														2
CGT	-	-	1																																																																																																																																																																																																																															1
CTA	-	-	2	4	2	1	1																																																																																																																																																																																																																											10
CTT	-	-	10	6	1	1		1																																																																																																																																																																																																																										19
GAA	-	-	38	28	7	6	2	5	1																																																																																																																																																																																																																									87
GAC	-	-	1	2																																																																																																																																																																																																																														3
GAG	-	-	9	1	1	2		1																																																																																																																																																																																																																										14
GAT	-	-	52	18	8	3	1		2									1																																																																																																																																																																																																																85
GGA	-	-		1	1																																																																																																																																																																																																																													2
GGT	-	-	1	1																																																																																																																																																																																																																														2
GTA	-	-	31	3	3			1		1																																																																																																																																																																																																																								39
GTG	-	-			1																																																																																																																																																																																																																													1
GTT	-	-	7	5	1	3				2						1	1																																																																																																																																																																																																																	20
TAA	-	-	234	132	112	71	51	28	26	16	9	3	1																																																																																																																																																																																																																					683
TAC	-	-	36	11	5	1					1		1				1																																																																																																																																																																																																																	56
TAG	-	-	16	9	5		1	2											1																																																																																																																																																																																																															34
TAT	-	-	489	251	205	143	83	56	40	27	19	10	6	3	1	1	1	2	1																																																																																																																																																																																																															1338
TCA	-	-	54	11	10	3	3	1																																																			1																																																																																																																																																																							83
TCC	-	-	4	2																																																																																																																																																																																																																														6
TCG	-	-	1																																																																																																																																																																																																																															1
TCT	-	-	20	8	4	11	1	1																																																																																																																																																																																																																										45
TGA	-	-	17	11	2		1																																																																																																																																																																																																																											31
TGG	-	-	2			3	2																																																																																																																																																																																																																											7
TGT	-	-	12	7	8	5	1		1										1																																																																																																																																																																																																															35
TTA	-	-	350	178	120	88	54	47	24	21	12	6	4	4		2	2	1			1	1																																																																																																																																																																																																												915
TTC	-	-	37	14	5	4	2	1		2						1																																																																																																																																																																																																																		66
TTG	-	-	27	13	6	5	2	2	2				1	1	1																																																																																																																																																																																																																			60
AAAC	-	23	2	5	3		1		2	1						2																																																																																																																																																																																																																		39
AAAG	-	16	4	7	1	2		1		1																																																																																																																																																																																																																								32
AAAT	-	509	274	152	67	43	14	5	5																																																																																																																																																																																																																									1069
AACA	-	3	1	3	2	1	1	2	1			1		1							1																																																																																																																																																																																																													17
AAGA	-	24	1	2		1									1																																																																																																																																																																																																																			29
AAGC	-	1																																																																																																																																																																																																																																1
AAGG	-	2																																																																																																																																																																																																																																2
AAGT	-			1																																																																																																																																																																																																																														1
AATA	-	326	186	103	45	21	15	5	8	2		3																																																																																																																																																																																																																						714
AATC	-			1																																																																																																																																																																																																																														1
AATG	-	2	1	2			1																																																																																																																																																																																																																											6
AATT	-	2	2	2																																																																																																																																																																																																																														6
ACAA	-		3	2			1	1						1																																																																																																																																																																																																																				8
ACAT	-	22	12	5	4	2	1			1																						2																				1																																																																																																																																																																														50
ACTT	-	1																																																																																																																																																																																																																																1
AGAA	-	3	2	3				1					1		1										1																																																																																																																																																																																																									12
AGGT	-	1																																																																																																																																																																																																																																1
AGTA	-	4																																																																																																																																																																																																																																4
ATAA	-	473	216	90	45	31	9	5	4		1	2																																																																																																																																																																																																																						876
ATAC	-	66	31	19	4	6	2	4		2		1				1				1																		1																																																																																																																																																																																												138
ATAG	-	1																																																																																																																																																																																																																																1
ATGA	-	3																																																																																																																																																																																																																																3
ATGC	-		1																																																																																																																																																																																																																															1
ATGT	-	21	9	3				1			1						1																															1																																																																																																																																																																																		37
ATTA	-	7	1																																																																																																																																																																																																																															8
ATTC	-	6	3	3	1		2																																																																																																																																																																																																																											15
ATTG	-	1																																																																																																																																																																																																																																1
ATTT	-	255	144	60	38	18	6			1																																																																																																																																																																																																																								522
CAAA	-	2	1			3																																																																																																																																																																																																																												6
CAAT	-	1																																																																																																																																																																																																																																1
CATA	-	28	5	4	2	1				1									1																																																																																																																																																																																																															42
CATC	-	1																																																																																																																																																																																																																																1
CATT	-	2																																																																																																																																																																																																																																2
CTTA	-	3																																																																																																																																																																																																																																3
CTTC	-	1																																																																																																																																																																																																																																1
CTTT	-	4																																																																																																																																																																																																																																4
GAAA	-	13	4	4	1	1														1																																																																																																																																																																																																														24
GAAT	-	3	1																																																																																																																																																																																																																															4
GCTA	-	1																																																																																																																																																																																																																																1
GGAA	-	1																																																																																																																																																																																																																																1
GTAT	-	22	6	4	2	1		4	1																																																																		1	1																																																																																																																																																						42
GTTT	-	4	1		1																																																																																																																																																																																																																													6
TAAA	-	173	84	43	16	4	7	2	1			1																																																																																																																																																																																																																						331
TAAC	-	1																																																																																																																																																																																																																																1
TAAT	-	12	3	2																																																																																																																																																																																																																														17
TACA	-	24	13	4	1	1	1	1			1																			1	3																																													1																			1																																																																																																																																			52
TAGA	-	1																																																																																																																																																																																																																																1
TAGC	-	3																																																																																																																																																																																																																																3
TAGT	-	1																																																																																																																																																																																																																																1
TATC	-	8																																																																																																																																																																																																																																8
TATG	-	70	28	9	9	10	4	3			1			1	1							1				1														1																																																																																																																																																																																										139
TATT	-	610	258	131	57	38	11	7	5		1	1		1																																																																																																																																																																																																																				1120
TCTT	-	1	1	3					1																																																																																																																																																																																																																									6
TGAA	-	3		1																																																																																																																																																																																																																														4
TGCA	-		1																																																																																																																																																																																																																															1
TGTA	-	21	8	4	3	3	1	1	1	1							1								1																																																																																																																																																																																																									45
TGTT	-	4	1	1			1				1																																																																																																																																																																																																																							8
TTAA	-	10	1																																																																																																																																																																																																																															11
TTAG	-	1																																																																																																																																																																																																																																1
TTAT	-	304	132	70	36	14	15	7	2					1																																																																																																																																																																																																																				581
TTCA	-		1																																																																																																																																																																																																																															1
TTCC	-						1																																																																																																																																																																																																																											1
TTCT	-	5	5	1	1																																																																																																																																																																																																																													12
TTGA	-				1		1																																																																																																																																																																																																																											2
TTGT	-	2	1		1	2	1	2																																																																																																																																																																																																																										9
TTTA	-	356	147	85	26	22	14	3	3	4		1																																																																																																																																																																																																																						661
TTTC	-	34	8	5		1		1																																																																																				1																																																																																																																																						50
TTTG	-	15	3	2	3	2	1						1		1	1																																																																																																																																																																																																																		29
AAAAC	27	10	4	1	1																																																																																																																																																																																																																													43
AAAAG	58	16	3	1			1																																																																																																																																																																																																																											79
AAAAT	524	177	82	23	9	3	1	3			1	1																																																																																																																																																																																																																						824
AAACA	5	2		1																																																																																																																																																																																																																														8
AAAGA	15	5	1																																																																																																																																																																																																																															21
AAAGC	2																																																																																																																																																																																																																																	2
AAAGG	3	2																																																																																																																																																																																																																																5
AAATA	219	74	32	8	4	2				1	1																																																																																																																																																																																																																							341
AAATC	4	1	1								1																																																																																																																																																																																																																							7
AAATG	14	3	1																																																																																																																																																																																																																															18
AAATT	9	3	3																																																																																																																																																																																																																															15
AACAA	4				1																																																																																																																																																																																																																													5
AACAT	1	1																																																																																																																																																																																																																																2
AACCA		1																																																																																																																																																																																																																																1
AAGAA	20	4	2	2																																																																																																																																																																																																																														28
AAGAG	4																																																																																																																																																																																																																																	4
AAGAT	1																																																																																																																																																																																																																																	1
AAGGG		2																																																																																																																																																																																																																																2
AATAA	181	56	13	2	3			1																																																																																																																																																																																																																										256
AATAC	8	2																																																																																																																																																																																																																																10
AATAG	2	1																																																																																																																																																																																																																																3
AATAT	108	41	16	7	3	1		2	1	1	1	1	1					1																																																																																																																																																																																																																184
AATCA	1																																																																																																																																																																																																																																	1
AATGA	1	1																																																																																																																																																																																																																																2
AATGG	7	8	4	1	1			1																																																																																																																																																																																																																										22
AATTA	10	1	1																																																																																																																																																																																																																															12
AATTC	1	2																																																																																																																																																																																																																																3
AATTG	1	2																																																																																																																																																																																																																																3
AATTT	7																																																																																																																																																																																																																																	7
ACAAA	7	1																																																																																																																																																																																																																																8
ACAAT		3																																																																																																																																																																																																																																3
ACACA			1																																																																																																																																																																																																																															1
ACTAT	1																																																																																																																																																																																																																																	1
AGAAA	16	4	1																																																																																																																																																																																																																															21
AGAAG	1																																																																																																																																																																																																																																	1
AGAAT	2																																																																																																																																																																																																																																	2
AGGAA	1																																																																																																																																																																																																																																	1
AGGGA		1																																																																																																																																																																																																																																1
AGTAT	1																																																																																																																																																																																																																																	1
ATAAA	125	26	10	1						1																																																																																																																																																																																																																								163
ATAAG	1																																																																																																																																																																																																																																	1
ATAAT	79	16	8	2	2	1		2	1				1																																																																																																																																																																																																																					112
ATACA	2																																																																																																																																																																																																																																	2
ATACT	1																																																																																																																																																																																																																																	1
ATAGA	1																																																																																																																																																																																																																																	1
ATATA	494	91	27	11	11	4	2	1	1		1		1						1											2																																																																																																																																																																																																				647
ATATC	3	1	1																																																																																																																																																																																																																															5
ATATG		1																																																																																																																																																																																																																																1
ATATT	64	22	5	2	2	2				1	1		1																																																																																																																																																																																																																					100
ATCAA		1																																																																																																																																																																																																																																1
ATCAT	3	1	1	1																																																																																																																																																																																																																														6
ATGAA	3																																																																																																																																																																																																																																	3
ATGGA	1			1		1																																																																																																																																																																																																																												3
ATTAA	4	1	1																																																																																																																																																																																																																															6
ATTAG	1																																																																																																																																																																																																																																	1
ATTAT	79	19	4	2	1	2		1	1				1																										1																																																																																																																																																																																											111
ATTCC	3	7	2	3	2	5	1																																																																																																																																																																																																																											23
ATTCT	2																																																																																																																																																																																																																																	2
ATTTA	13	3	1		1	1																																																																																																																																																																																																																												19
ATTTC	17	6	1																																																																																																																																																																																																																															24
ATTTG	2	1																																																																																																																																																																																																																																3
ATTTT	139	37	12	1	1	1	1																																																																																																																																																																																																																											192
CAAAA	1	2	1	1	1					1																																																																																																																																																																																																																								7
CAATA		1																																																																																																																																																																																																																																1
CAATT	1																																																																																																																																																																																																																																	1
CACAT	1																																																																																																																																																																																																																																	1
CATAA	1																																																																																																																																																																																																																																	1
CATAT	3	2																																																																																																																																																																																																																																5
CATCA	11																																																																																																																																																																																																																																	11
CATTA	1																																																																																																																																																																																																																																	1
CATTC	8	9	4			1																																																																																																																																																																																																																												22
CATTT	1																																																																																																																																																																																																																																	1
CCACA	2	2																																																																																																																																																																																																																																4
CCATT	4						1																																																																																																																																																																																																																											5
CCTTT	1																																																																																																																																																																																																																																	1
CTATT	1																																																																																																																																																																																																																																	1
CTTTA	1																																																																																																																																																																																																																																	1
CTTTT	25	4	2	1																																																																																																																																																																																																																														32
GAAAA	55	9	1																																																																																																																																																																																																																															65
GAAAG	1																																																																																																																																																																																																																																	1
GAAAT	8	1																																																																																																																																																																																																																																9
GAACG	2																																																																																																																																																																																																																																	2
GAACT	1																																																																																																																																																																																																																																	1
GAATA	1																																																																																																																																																																																																																																	1
GAATG	8	8	3	2	3	2	1	1																																																																																																																																																																																																																										28
GATAT		1																																																																																																																																																																																																																																1
GATTT	1																																																																																																																																																																																																																																	1
GGAAA	2																																																																																																																																																																																																																																	2
GGAAT	10	12	6	1	3	1			1																																																																																																																																																																																																																									34
GTATA	1																																																																																																																																																																																																																																	1
GTATT	1																																																																																																																																																																																																																																	1
GTGTT	1																																																																																																																																																																																																																																	1
GTTAT		1																																																																																																																																																																																																																																1
GTTTT	1	1			1																																																																																																																																																																																																																													3
TAAAA	100	31	8	3	2																																																																																																																																																																																																																													144
TAAAT	17		1																																																																																																																																																																																																																															18
TAAGA	1																																																																																																																																																																																																																																	1
TAAGT	1	1																																																																																																																																																																																																																																2
TAATA	36	14	3		1	2	1														1																																																																																																																																																																																																													58
TAATG	2																																																																																																																																																																																																																																	2
TAATT	3	1																																																																																																																																																																																																																																4
TACAT	1																																																																																																																																																																																																																																	1
TATAA	69	11	3	2											1																																																																																																																																																																																																																			86
TATAC	2																																																																																																																																																																																																																																	2
TATAG	1																																																																																																																																																																																																																																	1
TATAT	420	69	18	7	4	5	1	1	2			2			1																																																																																																																																																																																																																			530
TATCA	1																																																																																																																																																																																																																																	1
TATCT				1																																																																																																																																																																																																																														1
TATGA		1																																																																																																																																																																																																																																1
TATGT	6	1																																																																																																																																																																																																																																7
TATTA	117	40	8	7	5	3	1	3				1																																																																																																																																																																																																																						185
TATTC	1																																																																																																																																																																																																																																	1
TATTG	4	1	1																																																																																																																																																																																																																															6
TATTT	172	47	15	6	1	1		1																																																																																																																																																																																																																										243
TCCAT	4	2	2	1	1		1																																																																																																																																																																																																																											11
TCTCT	1																																																																																																																																																																																																																																	1
TCTTC	2																																																																																																																																																																																																																																	2
TCTTT	9	1																																																																																																																																																																																																																																10
TGAAA	3	1																																																																																																																																																																																																																																4
TGAAT		1																																																																																																																																																																																																																																1
TGATA		1		1																																																																																																																																																																																																																														2
TGATG	9																																																																																																																																																																																																																																	9
TGATT	4																																																																																																																																																																																																																																	4
TGGAA	1	2		1																																																																																																																																																																																																																														4
TGTAG	1																																																																																																																																																																																																																																	1
TGTAT	2	1																																																																																																																																																																																																																																3
TGTTA	1																																																																																																																																																																																																																																	1
TGTTC		1																																																																																																																																																																																																																																1
TGTTG	1																																																																																																																																																																																																																																	1
TGTTT	10	1	1	1		1																																																																																																																																																																																																																												14
TTAAA	5	3																																																																																																																																																																																																																																8
TTAAT	17	2																																																																																																																																																																																																																																19
TTACA	1																																																																																																																																																																																																																																	1
TTATA	74	25	9	2	3	2							3																	1															1																																																																																																																																																																																					120
TTATG	1																																																																																																																																																																																																																																	1
TTATT	242	74	21	6	5	1	2																																																																																																																																																																																																																											351
TTCAC		1																																																																																																																																																																																																																																1
TTCAT	2																																																																																																																																																																																																																																	2
TTCCA	9	1	1	1				2																																																																																																																																																																																																																										14
TTCTA	2			1																																																																																																																																																																																																																														3
TTCTG	1																																																																																																																																																																																																																																	1
TTCTT	23	1	2																																																																																																																																																																																																																															26
TTGAT	1																																																																																																																																																																																																																																	1
TTGGC	1																																																																																																																																																																																																																																	1
TTGTA	4	1																																																																																																																																																																																																																																5
TTGTC	1																																																																																																																																																																																																																																	1
TTGTT	5			2		1																																																																																																																																																																																																																												8
TTTAA	14	2	1																																																																																																																																																																																																																															17
TTTAT	247	87	27	4			1	1																																																																																																																																																																																																																										367
TTTCA	6	2		1																																																																																																																																																																																																																														9
TTTCC	5	1	1																																																																																																																																																																																																																															7
TTTCT	26	2	3	1																																																																																																																																																																																																																														32
TTTGA	3																																																																																																																																																																																																																																	3
TTTGC		1																																																																																																																																																																																																																																1
TTTGT	4	5	1			1																																																																																																																																																																																																																												11
TTTTA	280	85	34	15	2	2	1	2																																																																																																																																																																																																																										421
TTTTC	92	20	6	2					1																																																																																																																																																																																																																									121
TTTTG	22	7		2	1																																																																																																																																																																																																																													32
AAAAAC	4	3																																																																																																																																																																																																																																7
AAAAAG	46	11	2		1																																																																																																																																																																																																																													60
AAAAAT	109	20	6		1																																																																																																																																																																																																																													136
AAAACA	2	4																																																																																																																																																																																																																																6
AAAAGA	17	6	1																																																																																																																																																																																																																															24
AAAAGG	1																																																																																																																																																																																																																																	1
AAAATA	52	12	1																																																																																																																																																																																																																															65
AAAATC	3																																																																																																																																																																																																																																	3
AAAATG	9	1					1																																																																																																																																																																																																																											11
AAAATT	4	3																																																																																																																																																																																																																																7
AAACAA	1																																																																																																																																																																																																																																	1
AAACAC		1		1																																																																																																																																																																																																																														2
AAACAT	3	2																																																																																																																																																																																																																																5
AAAGAA	9	8																																																																																																																																																																																																																																17
AAAGAT	6	1																																																																																																																																																																																																																																7
AAAGGA		1		1																																																																																																																																																																																																																														2
AAAGGG	1																																																																																																																																																																																																																																	1
AAAGGT	1																																																																																																																																																																																																																																	1
AAATAA	34	4	1																																																																																																																																																																																																																															39
AAATAC	1	1	1																																																																																																																																																																																																																															3
AAATAG	1																																																																																																																																																																																																																																	1
AAATAT	54	13	5																																																																																																																																																																																																																															72
AAATGA		3																																																																																																																																																																																																																																3
AAATGC	2																																																																																																																																																																																																																																	2
AAATGG		1																																			1																																																																																																																																																																																													2
AAATGT	1	1																																																																																																																																																																																																																																2
AAATTA	3	1																																																																																																																																																																																																																																4
AAATTT	1																																																																																																																																																																																																																																	1
AACAAA	3	2																																																																																																																																																																																																																																5
AACAAG	1																																																																																																																																																																																																																																	1
AACAAT	1																																																																																																																																																																																																																																	1
AACATA	2																																																																																																																																																																																																																																	2
AACATG	2	1																																																																																																																																																																																																																																3
AACCCT	2																																																																																																																																																																																																																																	2
AACCTA	1																																																																																																																																																																																																																																	1
AAGAAA	12	4																																																																																																																																																																																																																																16
AAGAAT	1																																																																																																																																																																																																																																	1
AAGAGA			1																																																																																																																																																																																																																															1
AAGAGC		2																																																																																																																																																																																																																																2
AAGAGG	3																																																																																																																																																																																																																																	3
AAGATA			1																																																																																																																																																																																																																															1
AAGATG	2																																																																																																																																																																																																																																	2
AAGGAA	1																																																																																																																																																																																																																																	1
AAGGAT	2																																																																																																																																																																																																																																	2
AATAAA	18	3																																																																																																																																																																																																																																21
AATAAC	4	2	1																																																																																																																																																																																																																															7
AATAAG	2																																																																																																																																																																																																																																	2
AATAGA	1																																																																																																																																																																																																																																	1
AATAGT	3	1																																																																																																																																																																																																																																4
AATATA	36	9	1		1					1																																																																																																																																																																																																																								48
AATATC	1																																																																																																																																																																																																																																	1
AATATT	7																																																																																																																																																																																																																																	7
AATCAA	1																																																																																																																																																																																																																																	1
AATGAA	2	1																																																																																																																																																																																																																																3
AATGAT	5																																																																																																																																																																																																																																	5
AATGGA	1																																																																																																																																																																																																																																	1
AATGTA		1																																																																																																																																																																																																																																1
AATGTT	1																																																																																																																																																																																																																																	1
AATTAA	2	1																																																																																																																																																																																																																																3
AATTAT	10																																																																																																																																																																																																																																	10
AATTCT	1																																																																																																																																																																																																																																	1
AATTTC		1																																																																																																																																																																																																																																1
AATTTT	2																																																																																																																																																																																																																																	2
ACAAAA	3																																																																																																																																																																																																																																	3
ACAAAC	2	1																																																																																																																																																																																																																																3
ACAAAG	1																																																																																																																																																																																																																																	1
ACAAAT	2	1																																																																																																																																																																																																																																3
ACAAGA	2																																																																																																																																																																																																																																	2
ACAATA		1	1	1																																																																																																																																																																																																																														3
ACACAT	4		1																																																																																																																																																																																																																															5
ACATAA	2																																																																																																																																																																																																																																	2
ACATAC	1			1																																																																																																																																																																																																																														2
ACATAT	6		1			1																																																																																																																																																																																																																												8
ACATGA		1																																																																																																																																																																																																																																1
ACATTA	1																																																																																																																																																																																																																																	1
ACATTG		1																																																																																																																																																																																																																																1
ACATTT	1	1																																																																																																																																																																																																																																2
ACCAAG	1																																																																																																																																																																																																																																	1
ACCTCC	1																																																																																																																																																																																																																																	1
ACGATG			1																																																																																																																																																																																																																															1
ACTATT	5																																																																																																																																																																																																																																	5
AGAAAA	6	2				1																																																																																																																																																																																																																												9
AGAAAC	1																																																																																																																																																																																																																																	1
AGAAGG		1																																																																																																																																																																																																																																1
AGACCC	1																																																																																																																																																																																																																																	1
AGAGAA	1	1																																																																																																																																																																																																																																2
AGATAT			1							1																																																																																																																																																																																																																								2
AGCACC	1																																																																																																																																																																																																																																	1
AGGAAA	3																																																																																																																																																																																																																																	3
AGGAGC	1																																																																																																																																																																																																																																	1
AGGGTT	1																																																																																																																																																																																																																																	1
AGGTTT	1																																																																																																																																																																																																																																	1
AGTAAT	1																																																																																																																																																																																																																																	1
AGTATT	1																																																																																																																																																																																																																																	1
ATAAAA	17	6																																																																																																																																																																																																																																23
ATAAAC	9	4	2	2																																																																																																																																																																																																																														17
ATAAAG	3																																																																																																																																																																																																																																	3
ATAAAT	97	23	4	1	1																																																																																																																																																																																																																													126
ATAAGA	1	1																																																																																																																																																																																																																																2
ATAATG	5			1																																																																																																																																																																																																																														6
ATAATT	12	2																																																																																																																																																																																																																																14
ATACAC	2	1																																																																																																																																																																																																																																3
ATACAT	10	3		1																																																																																																																																																																																																																														14
ATAGAT		1																																																																																																																																																																																																																																1
ATAGGA	3																																																																																																																																																																																																																																	3
ATAGTA	1	2																																																																																																																																																																																																																																3
ATAGTT	1																																																																																																																																																																																																																																	1
ATATAA	118	7	2	1	1																																																																																																																																																																																																																													129
ATATAC	13	2																																																																																																																																																																																																																																15
ATATAG	2																																																																																																																																																																																																																																	2
ATATGC	3																																																																																																																																																																																																																																	3
ATATGT	4	3	3	1																																																																																																																																																																																																																														11
ATATTA	1																																																																																																																																																																																																																																	1
ATATTC	2	1																																																																																																																																																																																																																																3
ATATTT	29	6	1			1			1																																																																																																																																																																																																																									38
ATCAAG	2																																																																																																																																																																																																																																	2
ATCAGC	1																																																																																																																																																																																																																																	1
ATCATA	1	1																																																																																																																																																																																																																																2
ATCATT	8			1																																																																																																																																																																																																																														9
ATCTAT	1																																																																																																																																																																																																																																	1
ATCTTC	1																																																																																																																																																																																																																																	1
ATCTTT	1																																																																																																																																																																																																																																	1
ATGAAA	2																																																																																																																																																																																																																																	2
ATGAAC	2																																																																																																																																																																																																																																	2
ATGAAG	1																																																																																																																																																																																																																																	1
ATGAAT	1																																																																																																																																																																																																																																	1
ATGATA	5	2		2																																																																																																																																																																																																																														9
ATGATC	2																																																																																																																																																																																																																																	2
ATGATT		1																																																																																																																																																																																																																																1
ATGGTG	1																																																																																																																																																																																																																																	1
ATGTAA	1	1																																																																																																																																																																																																																																2
ATGTAT	3																																																																																																																																																																																																																																	3
ATGTTC	2		1																																																																																																																																																																																																																															3
ATGTTG	1																																																																																																																																																																																																																																	1
ATGTTT	2	1		1																																																																																																																																																																																																																														4
ATTAAC	1																																																																																																																																																																																																																																	1
ATTAAT	4																																																																																																																																																																																																																																	4
ATTACA		1																																																																																																																																																																																																																																1
ATTACT		2		1																																																																																																																																																																																																																														3
ATTAGC		1																																																																																																																																																																																																																																1
ATTATA	7	2																																																																																																																																																																																																																																9
ATTATC	11	4		1																																																																																																																																																																																																																														16
ATTATG		1																																																																																																																																																																																																																																1
ATTCCT	1																																																																																																																																																																																																																																	1
ATTGTA	1																																																																																																																																																																																																																																	1
ATTGTT	2	1																																																																																																																																																																																																																																3
ATTTAA	2	1																																																																																																																																																																																																																																3
ATTTAC	5	4																																																																																																																																																																																																																																9
ATTTAT	23	3	2			1																																																																																																																																																																																																																												29
ATTTGC	2																																																																																																																																																																																																																																	2
ATTTGT				1																																																																																																																																																																																																																														1
ATTTTA	7																																																																																																																																																																																																																																	7
ATTTTC	8	3		1																																																																																																																																																																																																																														12
ATTTTG	1																																																																																																																																																																																																																																	1
ATTTTT	46	3	1		1																																																																																																																																																																																																																													51
CAAATG	1																																																																																																																																																																																																																																	1
CAACAC	2																																																																																																																																																																																																																																	2
CAACAG	1																																																																																																																																																																																																																																	1
CAAGAG		2																																																																																																																																																																																																																																2
CAATAA	1	3	1																																																																																																																																																																																																																															5
CAATAC	1																																																																																																																																																																																																																																	1
CAGCAC		3																																																																																																																																																																																																																																3
CATAAA	1																																																																																																																																																																																																																																	1
CATATA	3		2																																																																																																																																																																																																																															5
CATCAA	3																																																																																																																																																																																																																																	3
CATCAC	1																																																																																																																																																																																																																																	1
CATCCA	1																																																																																																																																																																																																																																	1
CATGAA	1																																																																																																																																																																																																																																	1
CATGAG	1																																																																																																																																																																																																																																	1
CATGAT			1																																																																																																																																																																																																																															1
CATTAT	1	2		1																																																																																																																																																																																																																														4
CATTTA	1																																																																																																																																																																																																																																	1
CATTTT	2			2																																																																																																																																																																																																																														4
CCATTA	3	1																																																																																																																																																																																																																																4
CCATTT	1	1																																																																																																																																																																																																																																2
CCTAAA	30	3	1																																																																																																																																																																																																																															34
CCTTAT		1																																																																																																																																																																																																																																1
CCTTTA		1																																																																																																																																																																																																																																1
CCTTTC		1																																																																																																																																																																																																																																1
CCTTTT	1		2																																																																																																																																																																																																																															3
CTCTTT	1																																																																																																																																																																																																																																	1
CTTACT	1																																																																																																																																																																																																																																	1
CTTATT	1																																																																																																																																																																																																																																	1
CTTCAC		1																																																																																																																																																																																																																																1
CTTCGT		2																																																																																																																																																																																																																																2
CTTTTC	2	1	1																																																																																																																																																																																																																															4
CTTTTT	8	1																																																																																																																																																																																																																																9
GAAAAA	6	6	2																																																																																																																																																																																																																															14
GAAAAG	3	1																																																																																																																																																																																																																																4
GAAAAT	2	3																																																																																																																																																																																																																																5
GAAAGA	2																																																																																																																																																																																																																																	2
GAAATA	1			2																																																																																																																																																																																																																														3
GAAATG			1								1																																																																																																																																																																																																																							2
GAACAC			1																																																																																																																																																																																																																															1
GAAGAC	2																																																																																																																																																																																																																																	2
GAAGAG	1																																																																																																																																																																																																																																	1
GAAGAT	2	1																																																																																																																																																																																																																																3
GAAGGA	1																																																																																																																																																																																																																																	1
GAAGGG	1																																																																																																																																																																																																																																	1
GAAGTA	2																																																																																																																																																																																																																																	2
GAATAT		1																																																																																																																																																																																																																																1
GACAAA	1																																																																																																																																																																																																																																	1
GACGAA	5	3																																																																																																																																																																																																																																8
GAGAAA			1																																																																																																																																																																																																																															1
GAGGAA		2																																																																																																																																																																																																																																2
GATAAA	2		1																																																																																																																																																																																																																															3
GATAAC		1																																																																																																																																																																																																																																1
GATAAT	1																																																																																																																																																																																																																																	1
GATAGA	2																																																																																																																																																																																																																																	2
GATATA	2																																																																																																																																																																																																																																	2
GATCTT	2																																																																																																																																																																																																																																	2
GATGAA	3	1																																																																																																																																																																																																																																4
GATGAC	1																																																																																																																																																																																																																																	1
GATGGG	1																																																																																																																																																																																																																																	1
GCTTGA		1																																																																																																																																																																																																																																1
GGAAAA		1																																																																																																																																																																																																																																1
GGAAAT			1																																																																																																																																																																																																																															1
GGAATG	1																																																																																																																																																																																																																																	1
GGACAT	1																																																																																																																																																																																																																																	1
GGTGAA	1																																																																																																																																																																																																																																	1
GGTGGA	2																																																																																																																																																																																																																																	2
GGTTTA	25																																																																																																																																																																																																																																	25
GTAAAA	1																																																																																																																																																																																																																																	1
GTAAAT	1																																																																																																																																																																																																																																	1
GTAATA	1	1	2																																																																																																																																																																																																																															4
GTAGGA	2																																																																																																																																																																																																																																	2
GTATAT	1																																																																																																																																																																																																																																	1
GTCAAC	1																																																																																																																																																																																																																																	1
GTCTTC	1																																																																																																																																																																																																																																	1
GTGATG	1																																																																																																																																																																																																																																	1
GTGGTA	4																																																																																																																																																																																																																																	4
GTGTTA	1																																																																																																																																																																																																																																	1
GTTATT	1																																																																																																																																																																																																																																	1
GTTCTT	1																																																																																																																																																																																																																																	1
GTTTTT	1																																																																																																																																																																																																																																	1
TAAAAA	16	6																																																																																																																																																																																																																																22
TAAAAG	1																																																																																																																																																																																																																																	1
TAAAAT	1																																																																																																																																																																																																																																	1
TAAACA	3	2																																																																																																																																																																																																																																5
TAAACC	1																																																																																																																																																																																																																																	1
TAAAGG	1																																																																																																																																																																																																																																	1
TAAATA	21	4	1	2																																																																																																																																																																																																																														28
TAAATG	1																																																																																																																																																																																																																																	1
TAAATT	2																																																																																																																																																																																																																																	2
TAACAA	1																																																																																																																																																																																																																																	1
TAACTA	1																																																																																																																																																																																																																																	1
TAATAC	1																																																																																																																																																																																																																																	1
TAATAG	7	4																																																																																																																																																																																																																																11
TAATAT	1																																																																																																																																																																																																																																	1
TAATGA	3	1	2																																																																																																																																																																																																																															6
TAATGT	2																																																																																																																																																																																																																																	2
TAATTA	3	1																																																																																																																																																																																																																																4
TAATTG		1	1																																																																																																																																																																																																																															2
TAATTT	1																																																																																																																																																																																																																																	1
TACATA	2																																																																																																																																																																																																																																	2
TACATG	1																																																																																																																																																																																																																																	1
TACATT		1																																																																																																																																																																																																																																1
TACTAT	2																																																																																																																																																																																																																																	2
TAGAAC		1																																																																																																																																																																																																																																1
TAGATA	1																																																																																																																																																																																																																																	1
TAGTAA	2			3																																																																																																																																																																																																																														5
TATAAA	22	3	1																																																																																																																																																																																																																															26
TATAAT	5	3																																																																																																																																																																																																																																8
TATATC	2																																																																																																																																																																																																																																	2
TATATG	6	2																																																																																																																																																																																																																																8
TATATT	98	16	2	2																																																																																																																																																																																																																														118
TATCAT	1																																																																																																																																																																																																																																	1
TATCGT	1																																																																																																																																																																																																																																	1
TATCTA	1																																																																																																																																																																																																																																	1
TATCTT	1																																																																																																																																																																																																																																	1
TATGTA	5																																																																																																																																																																																																																																	5
TATGTT	6	2		1																																																																																																																																																																																																																														9
TATTAA	3																																																																																																																																																																																																																																	3
TATTAC	6	2	1																																																																																																																																																																																																																															9
TATTCT		1																																																																																																																																																																																																																																1
TATTGT	1	1																																																																																																																																																																																																																																2
TATTTA	80	19	7	1	1																																																																																																																																																																																																																													108
TATTTC	2																																																																																																																																																																																																																																	2
TATTTG	1																																																																																																																																																																																																																																	1
TATTTT	54	11																																																																																																																																																																																																																																65
TCAAAA	1																																																																																																																																																																																																																																	1
TCACAA	1																																																																																																																																																																																																																																	1
TCACCA			1																																																																																																																																																																																																																															1
TCACCT	1																																																																																																																																																																																																																																	1
TCATAA			1																																																																																																																																																																																																																															1
TCATCG	3																																																																																																																																																																																																																																	3
TCATCT	3	1																																																																																																																																																																																																																																4
TCATTA	1																																																																																																																																																																																																																																	1
TCATTG	1																																																																																																																																																																																																																																	1
TCATTT	2	1																																																																																																																																																																																																																																3
TCCATT	1																																																																																																																																																																																																																																	1
TCCTAC	1																																																																																																																																																																																																																																	1
TCCTCA	1																																																																																																																																																																																																																																	1
TCCTTT	1	1																																																																																																																																																																																																																																2
TCGTCA	2	3																																																																																																																																																																																																																																5
TCTATA	1																																																																																																																																																																																																																																	1
TCTCTA	4																																																																																																																																																																																																																																	4
TCTCTT	1																																																																																																																																																																																																																																	1
TCTGAG		1																																																																																																																																																																																																																																1
TCTGTA	1																																																																																																																																																																																																																																	1
TCTTAT	1																																																																																																																																																																																																																																	1
TCTTCA		3																																																																																																																																																																																																																																3
TCTTCC	1	1	1																																																																																																																																																																																																																															3
TCTTCG	1																																																																																																																																																																																																																																	1
TCTTGT	1																																																																																																																																																																																																																																	1
TCTTTA	4																																																																																																																																																																																																																																	4
TCTTTC	1	4																																																																																																																																																																																																																																5
TCTTTT	3	1																																																																																																																																																																																																																																4
TGAAAA	2	1																																																																																																																																																																																																																																3
TGAACA	1																																																																																																																																																																																																																																	1
TGAAGA		1																																																																																																																																																																																																																																1
TGAATC	1																																																																																																																																																																																																																																	1
TGACGA		1																																																																																																																																																																																																																																1
TGAGCT	1																																																																																																																																																																																																																																	1
TGATAA	1																																																																																																																																																																																																																																	1
TGATGG	1																																																																																																																																																																																																																																	1
TGATTA	2																																																																																																																																																																																																																																	2
TGATTT		1																																																																																																																																																																																																																																1
TGCAAC	1																																																																																																																																																																																																																																	1
TGCTGG	2																																																																																																																																																																																																																																	2
TGTATA	2																																																																																																																																																																																																																																	2
TGTATT	2		1																																																																																																																																																																																																																															3
TGTGTT	2																																																																																																																																																																																																																																	2
TGTTAT	1																																																																																																																																																																																																																																	1
TGTTCA	1	1																																																																																																																																																																																																																																2
TGTTCT		1																																																																																																																																																																																																																																1
TGTTTA	1	1																																																																																																																																																																																																																																2
TGTTTG		1																																																																																																																																																																																																																																1
TGTTTT		1	2																																																																																																																																																																																																																															3
TTAAAA	1	1																																																																																																																																																																																																																																2
TTAAAT		1																																																																																																																																																																																																																																1
TTAATA	1																																																																																																																																																																																																																																	1
TTAATG	2																																																																																																																																																																																																																																	2
TTAATT	1																																																																																																																																																																																																																																	1
TTACAA		1																																																																																																																																																																																																																																1
TTACTA	1	1																																																																																																																																																																																																																																2
TTACTT		1																																																																																																																																																																																																																																1
TTAGGG	4	1				1																																																																																																																																																																																																																												6
TTATAT	21	2	2																																																																																																																																																																																																																															25
TTATCA	3																																																																																																																																																																																																																																	3
TTATCC	2																																																																																																																																																																																																																																	2
TTATCT	4																																																																																																																																																																																																																																	4
TTATGT	2																																																																																																																																																																																																																																	2
TTATTC	3																																																																																																																																																																																																																																	3
TTATTG	8	2																																																																																																																																																																																																																																10
TTATTT	35	5	2																																																																																																																																																																																																																															42
TTCAAT						1																																																																																																																																																																																																																												1
TTCATG	2	1																																																																																																																																																																																																																																3
TTCATT	1																																																																																																																																																																																																																																	1
TTCCAT	1																																																																																																																																																																																																																																	1
TTCTGA		1																																																																																																																																																																																																																																1
TTCTTA	4																																																																																																																																																																																																																																	4
TTCTTT	10	2	1																																																																																																																																																																																																																															13
TTGACC						1																																																																																																																																																																																																																												1
TTGATT	2																																																																																																																																																																																																																																	2
TTGTAT	1																																																																																																																																																																																																																																	1
TTGTCT	1																																																																																																																																																																																																																																	1
TTGTGT		1																																																																																																																																																																																																																																1
TTGTTA		1																																																																																																																																																																																																																																1
TTGTTT	1	1	1																																																																																																																																																																																																																															3
TTTAAA	1																																																																																																																																																																																																																																	1
TTTAAT	4																																																																																																																																																																																																																																	4
TTTACA	1																																																																																																																																																																																																																																	1
TTTAGG	4																																																																																																																																																																																																																																	4
TTTATA	63		1	1				1																																																																																																																																																																																																																										66
TTTATG	6		2	1																																																																																																																																																																																																																														9
TTTATT	38	7																																																																																																																																																																																																																																45
TTTCAT	3	1																																																																																																																																																																																																																																4
TTTCCT	1																																																																																																																																																																																																																																	1
TTTCTA	2			1																																																																																																																																																																																																																														3
TTTCTC	3																																																																																																																																																																																																																																	3
TTTCTG		1	1																																																																																																																																																																																																																															2
TTTCTT	15	1	4																																																																																																																																																																																																																															20
TTTGAT	2																																																																																																																																																																																																																																	2
TTTGCA	1																																																																																																																																																																																																																																	1
TTTGTA	2		1																																																																																																																																																																																																																															3
TTTGTC	1																																																																																																																																																																																																																																	1
TTTGTG	1																																																																																																																																																																																																																																	1
TTTGTT	2																																																																																																																																																																																																																																	2
TTTTAA	2	1				1																																																																																																																																																																																																																												4
TTTTAC	1																																																																																																																																																																																																																																	1
TTTTAT	40	5	3		1																																																																																																																																																																																																																													49
TTTTCA	3	2																																																																																																																																																																																																																																5
TTTTCC	4	2	1																																																																																																																																																																																																																															7
TTTTCT	17	5	2	2																																																																																																																																																																																																																														26
TTTTGT	3	1		1																																																																																																																																																																																																																														5
TTTTTA	65	14	3	2																																																																																																																																																																																																																														84
TTTTTC	46	17	4	1			1																																																																																																																																																																																																																											69
TTTTTG	6	3																																																																																																																																																																																																																																9

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	169	170	171	172	173	174	175	176	177	178	179	180	181	182	183	184	185	186	187	188	189	190	191	192	193	194	195	196	197	198	199	200	201	202	203	204	205	206	207	208	209	210	211	212	213	214	215	216	217	218	219	220	221	222	223	224	225	226	227	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1818	1567	1396	1250	1108	1076	985	870	782	590	515	399	296	246	257	201	171	151	139	88	48	38	23	27	11	6	6	6	3	4		3	4	1	3	1	1	2		1				1	1																															1										1							1																											1	1																																							1																																																1	14102
AC/GT	-	-	-	135	48	34	8	12	3	2																																																																																																																																																																																																																								242
AG/CT	-	-	-	21	25	10	1	3			1			1																																																																																																																																																																																																																				62
AT/AT	-	-	-	9814	6356	4940	4252	3911	3637	3248	2907	2486	2156	1842	1441	1120	1001	765	626	428	297	201	158	77	56	40	30	7	6	9	5	1	1	3					1																																																																																																																																																																																											51822
CG/CG	-	-	-		1																																																																																																																																																																																																																													1
AAC/GTT	-	-	80	46	30	21	10	5	7	4	2	2	5	2	1	2	1		1																			1																																																																																																																																																																																												220
AAG/CTT	-	-	128	77	21	24	5	8	1	3	1					1																																																																																																																																																																																																																		269
AAT/ATT	-	-	2408	1355	947	711	454	322	187	141	84	38	33	10	9	11	4	6	1		1	2											1																																																																																																																																																																																																	6725
ACC/GGT	-	-	5	2	1	3	3																																																																																																																																																																																																																											14
ACG/CGT	-	-	6	2																																																																																																																																																																																																																														8
ACT/AGT	-	-	103	41	20	3	3	4	1	2	1		1				1		1																																																																																																																																																																																																															181
AGG/CCT	-	-	13	4	2	2		1																																																																																																																																																																																																																										22
ATC/ATG	-	-	247	88	38	13	13	3	3	1	1		1				1	1				1																																					1																																																																																																																																																																							412
AAAC/GTTT	-	53	13	13	10	8	6	5	3	1	1	1	1	2	1	3					1																																																																																																																																																																																																													122
AAAG/CTTT	-	100	25	25	3	5		3	1	1			1		2					1					1																																																																			1																																																																																																																																						169
AAAT/ATTT	-	3006	1441	734	330	191	91	34	28	7	2	8		2																																																																																																																																																																																																																				5874
AACT/AGTT	-	3																																																																																																																																																																																																																																3
AAGC/CTTG	-	1																																																																																																																																																																																																																																1
AAGG/CCTT	-	4					1																																																																																																																																																																																																																											5
AAGT/ACTT	-	8		1																																																																																																																																																																																																																														9
AATC/ATTG	-	2		1	1		1																																																																																																																																																																																																																											5
AATG/ATTC	-	19	6	6	1		3																																																																																																																																																																																																																											35
AATT/AATT	-	31	7	4																																																																																																																																																																																																																														42
ACAT/ATGT	-	274	112	52	25	24	9	14	2	5	3	1		1	1	1	2		1	1		1			1	1				1	3	2						1		1								1				1																							1	2																			1																																																																																																																																			545
ACCT/AGGT	-	1																																																																																																																																																																																																																																1
AGAT/ATCT	-	10																																																																																																																																																																																																																																10
AGCT/AGCT	-	4																																																																																																																																																																																																																																4
ATCC/ATGG	-	1																																																																																																																																																																																																																																1
ATGC/ATGC	-		2																																																																																																																																																																																																																															2
AAAAC/GTTTT	86	29	7	8	5	3				1																																																																																																																																																																																																																								139
AAAAG/CTTTT	339	66	21	7			1		1																																																																																																																																																																																																																									435
AAAAT/ATTTT	2229	694	254	69	27	10	6	8		2	2	1																																																																																																																																																																																																																						3302
AAACC/GGTTT		1																																																																																																																																																																																																																																1
AAAGC/CTTTG	2	1																																																																																																																																																																																																																																3
AAAGG/CCTTT	13	3	1																																																																																																																																																																																																																															17
AAAGT/ACTTT	1																																																																																																																																																																																																																																	1
AAATC/ATTTG	16	3	1								1																																																																																																																																																																																																																							21
AAATG/ATTTC	55	14	2	1																																																																																																																																																																																																																														72
AAATT/AATTT	99	16	8		1	1																																																																																																																																																																																																																												125
AACAC/GTGTT	2		1																																																																																																																																																																																																																															3
AACAG/CTGTT	1	1																																																																																																																																																																																																																																2
AACAT/ATGTT	10	3																																																																																																																																																																																																																																13
AACGG/CCGTT	2																																																																																																																																																																																																																																	2
AACTG/AGTTC	1																																																																																																																																																																																																																																	1
AACTT/AAGTT	1	1																																																																																																																																																																																																																																2
AAGAC/CTTGT	1																																																																																																																																																																																																																																	1
AAGAG/CTCTT	8																																																																																																																																																																																																																																	8
AAGAT/ATCTT	3			1																																																																																																																																																																																																																														4
AAGCC/CTTGG	1																																																																																																																																																																																																																																	1
AAGGG/CCCTT		3																																																																																																																																																																																																																																3
AAGTG/ACTTC		1																																																																																																																																																																																																																																1
AATAC/ATTGT	21	9	1																																																																																																																																																																																																																															31
AATAG/ATTCT	12	1		1																																																																																																																																																																																																																														14
AATAT/ATATT	1540	348	101	42	32	22	5	10	6	2	3	4	8		2			1	1		1									3									1						1																																																																																																																																																																																					2133
AATCT/AGATT	1																																																																																																																																																																																																																																	1
AATGG/ATTCC	55	49	22	11	10	10	4	4	1																																																																																																																																																																																																																									166
AATGT/ACATT	5																																																																																																																																																																																																																																	5
AATTC/AATTG	3	5																																																																																																																																																																																																																																8
ACACC/GGTGT	2	2																																																																																																																																																																																																																																4
ACACT/AGTGT	1																																																																																																																																																																																																																																	1
ACATC/ATGTG	21																																																																																																																																																																																																																																	21
ACTAT/AGTAT	7																																																																																																																																																																																																																																	7
ATATC/ATATG	10	8	2	2																																																																																																																																																																																																																														22
AAAAAC/GTTTTT	26	15	3	1																																																																																																																																																																																																																														45
AAAAAG/CTTTTT	195	64	16	3	1	1	1																																																																																																																																																																																																																											281
AAAAAT/ATTTTT	524	96	17	2	3																																																																																																																																																																																																																													642
AAAAGG/CCTTTT	17	7	4	1																																																																																																																																																																																																																														29
AAAAGT/ACTTTT	3	1																																																																																																																																																																																																																																4
AAAATC/ATTTTG	10	1																																																																																																																																																																																																																																11
AAAATG/ATTTTC	36	16		3			1																																																																																																																																																																																																																											56
AAAATT/AATTTT	28	7				1																																																																																																																																																																																																																												36
AAACAC/GTGTTT	5	4		1																																																																																																																																																																																																																														10
AAACAG/CTGTTT	1	1	1																																																																																																																																																																																																																															3
AAACAT/ATGTTT	37	12	4	5																																																																																																																																																																																																																														58
AAACCT/AGGTTT	62	3	1																																																																																																																																																																																																																															66
AAAGAC/CTTTGT	4																																																																																																																																																																																																																																	4
AAAGAG/CTCTTT	9	5	2																																																																																																																																																																																																																															16
AAAGAT/ATCTTT	21	1	2																																																																																																																																																																																																																															24
AAAGGG/CCCTTT	1	1																																																																																																																																																																																																																																2
AAAGGT/ACCTTT	2	1																																																																																																																																																																																																																																3
AAATAC/ATTTGT	9	2	3	1																																																																																																																																																																																																																														15
AAATAG/ATTTCT	7			3																																																																																																																																																																																																																														10
AAATAT/ATATTT	662	105	29	8	4	2		1	1	1																																																																																																																																																																																																																								813
AAATGC/ATTTGC	6																																																																																																																																																																																																																																	6
AAATGG/ATTTCC	4	2	2								1																										1																																																																																																																																																																																													10
AAATGT/ACATTT	12	9																																																																																																																																																																																																																																21
AAATTG/AATTTC		1				1																																																																																																																																																																																																																												2
AAATTT/AAATTT	6	2																																																																																																																																																																																																																																8
AACAAG/CTTGTT	5	1																																																																																																																																																																																																																																6
AACAAT/ATTGTT	20	11	3	1																																																																																																																																																																																																																														35
AACACC/GGTGTT	2																																																																																																																																																																																																																																	2
AACACG/CGTGTT			1																																																																																																																																																																																																																															1
AACACT/AGTGTT	1																																																																																																																																																																																																																																	1
AACAGC/CTGTTG	1																																																																																																																																																																																																																																	1
AACATC/ATGTTG	4																																																																																																																																																																																																																																	4
AACATG/ATGTTC	11	4	1																																																																																																																																																																																																																															16
AACATT/AATGTT	7																																																																																																																																																																																																																																	7
AACCCT/AGGGTT	7	1				1																																																																																																																																																																																																																												9
AACGAT/ATCGTT	1	1																																																																																																																																																																																																																																2
AACGTC/ACGTTG	1																																																																																																																																																																																																																																	1
AACTAG/AGTTCT		1																																																																																																																																																																																																																																1
AACTAT/AGTTAT	2																																																																																																																																																																																																																																	2
AACTGC/AGTTGC	1																																																																																																																																																																																																																																	1
AAGAAT/ATTCTT	13	2																																																																																																																																																																																																																																15
AAGACC/CTTGGT	1																																																																																																																																																																																																																																	1
AAGACG/CGTCTT	9	5																																																																																																																																																																																																																																14
AAGAGC/CTCTTG		4																																																																																																																																																																																																																																4
AAGAGG/CCTCTT	5	3	1																																																																																																																																																																																																																															9
AAGAGT/ACTCTT	1																																																																																																																																																																																																																																	1
AAGATC/ATCTTG	4																																																																																																																																																																																																																																	4
AAGATG/ATCTTC	12	7																																																																																																																																																																																																																																19
AAGCTC/AGCTTG	1	1																																																																																																																																																																																																																																2
AAGGAG/CCTTCT	1	1																																																																																																																																																																																																																																2
AAGGAT/ATCCTT	4	1																																																																																																																																																																																																																																5
AAGGGG/CCCCTT	1																																																																																																																																																																																																																																	1
AAGGTC/ACCTTG						1																																																																																																																																																																																																																												1
AAGGTG/ACCTTC	2	1																																																																																																																																																																																																																																3
AAGTAG/ACTTCT	2																																																																																																																																																																																																																																	2
AATACC/ATTGGT	1																																																																																																																																																																																																																																	1
AATACT/AGTATT	2																																																																																																																																																																																																																																	2
AATAGG/ATTCCT	4																																																																																																																																																																																																																																	4
AATAGT/ACTATT	29	13	3	4																																																																																																																																																																																																																														49
AATATC/ATATTG	1																																																																																																																																																																																																																																	1
AATATG/ATATTC	3	2																																																																																																																																																																																																																																5
AATATT/AATATT	17																																																																																																																																																																																																																																	17
AATCAC/ATTGTG	1																																																																																																																																																																																																																																	1
AATCAG/ATTCTG		1																																																																																																																																																																																																																																1
AATCAT/ATGATT	3	3	1																																																																																																																																																																																																																															7
AATCTG/AGATTC	1																																																																																																																																																																																																																																	1
AATGAC/ATTGTC	1																																																																																																																																																																																																																																	1
AATGAT/ATCATT	45	9	2	6																																																																																																																																																																																																																														62
AATGCT/AGCATT		1																																																																																																																																																																																																																																1
AATGGG/ATTCCC	1																																																																																																																																																																																																																																	1
AATGGT/ACCATT	3	1																																																																																																																																																																																																																																4
AATGTC/ACATTG		1																																																																																																																																																																																																																																1
AATTAC/AATTGT	1	3	1																																																																																																																																																																																																																															5
AATTAG/AATTCT	1																																																																																																																																																																																																																																	1
AATTAT/AATTAT	37	8																																																																																																																																																																																																																																45
ACACAT/ATGTGT	7	1	1	1																																																																																																																																																																																																																														10
ACAGAT/ATCTGT	1																																																																																																																																																																																																																																	1
ACATAT/ATATGT	55	10	6	2		1																																																																																																																																																																																																																												74
ACATCC/ATGTGG	1																																																																																																																																																																																																																																	1
ACATGG/ATGTCC	1																																																																																																																																																																																																																																	1
ACATGT/ACATGT	1																																																																																																																																																																																																																																	1
ACCACT/AGTGGT	4																																																																																																																																																																																																																																	4
ACCAGC/CTGGTG	3	3																																																																																																																																																																																																																																6
ACCATC/ATGGTG	4		1																																																																																																																																																																																																																															5
ACCCAG/CTGGGT	1																																																																																																																																																																																																																																	1
ACCTCC/AGGTGG	3																																																																																																																																																																																																																																	3
ACGATG/ATCGTC	6	4	1																																																																																																																																																																																																																															11
ACTCAG/AGTCTG		1																																																																																																																																																																																																																																1
ACTCCT/AGGAGT	3																																																																																																																																																																																																																																	3
AGAGAT/ATCTCT	6																																																																																																																																																																																																																																	6
AGATAT/ATATCT	10	1	1							1																																																																																																																																																																																																																								13
AGCAGG/CCTGCT	1																																																																																																																																																																																																																																	1
AGCATC/ATGCTG	1																																																																																																																																																																																																																																	1
AGCATG/ATGCTC	1																																																																																																																																																																																																																																	1
AGGATG/ATCCTC	1																																																																																																																																																																																																																																	1
ATATGC/ATATGC	3																																																																																																																																																																																																																																	3
ATCATG/ATCATG	2		1																																																																																																																																																																																																																															3
ATCCCC/ATGGGG	1																																																																																																																																																																																																																																	1
