Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_001861175.1/fasta/hub_GCA_001861175.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              8878
Total size of examined sequences (bp):           30531983
Total number of identified SSRs:                 79909
Number of SSR containing sequences:              7968
Number of sequences containing more than 1 SSR:  7332
Number of SSRs present in compound formation:    33170


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	13439
2	42073
3	8759
4	5740
5	7360
6	2538

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	677	625	526	451	436	404	436	358	325	282	249	222	172	161	156	127	113	101	86	102	68	67	50	43	43	34	31	35	31	30	28	21	22	23	12	19	28	13	7	10	7	14	9	14	7	4	11	6	7	7	7	7	5	5	8	3	3	4	5	4	6	2	8	3	3	2	3	2	2	1	3	3	2	1	1		1			1							1			6806
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	634	537	519	497	441	384	361	341	320	288	285	201	180	164	132	132	118	110	93	72	62	64	55	50	37	47	35	25	41	23	24	18	26	23	22	16	20	21	14	17	5	11	8	14	12	5	8	8	9	9	11	7	1	7	4	4	7	5	4	3	8	4	6	3	1		3	4		2	3	1	3			1							1				1		1	6633
AC	-	-	-	25	24	11	4	2		2																																																																																																	68
AG	-	-	-	8	5	2		4																																																																																																			19
AT	-	-	-	4204	2694	2174	2030	2080	2011	1811	1685	1631	1376	1056	877	655	535	423	288	216	144	97	67	37	25	8	9	7	7	6	3	4	1	1			1	1			1																																																																		26165
CA	-	-	-	79	9	6		4																																																																																																			98
CT	-	-	-	2	3	1																																																																																																					6
GA	-	-	-	5	2	1																																																																																																					8
GC	-	-	-	3																																																																																																							3
GT	-	-	-	15	8	4	9	2																																																																																																			38
TA	-	-	-	3096	1981	1535	1334	1194	1090	970	907	779	647	495	390	334	250	164	118	94	43	43	21	22	9	10	6	1	2	2	1	3	1				1	1																																																																					15544
TC	-	-	-	7	2	5	3			1																																																																																																	18
TG	-	-	-	64	19	17	3	2		1																																																																																																	106
AAC	-	-	36	12	9	7	5		1		2	1	1																																																																																														74
AAG	-	-	23	11	4	5	2	2																																																																																																			47
AAT	-	-	517	318	220	188	107	69	51	25	22	17	3	5	2		1		1																																																																																								1546
ACA	-	-	8	3	2	3	1	4	1	1	1			1			1	1																																																																																									27
ACC	-	-	2	1																																																																																																							3
ACT	-	-	11	4	11			3																																																																																																			29
AGA	-	-	11	10	2	1																																																																																																					24
AGG	-	-	1	2																																																																																																							3
AGT	-	-	2	7	2		1	1																																																																																																			13
ATA	-	-	545	254	199	164	113	59	33	22	19	20	12	4		1	2		1				1																																																																																				1449
ATC	-	-	61	33	13	1	2		1														1																																																																																				112
ATG	-	-	56	21	7	3	2	3		1																			1																																																																														94
ATT	-	-	446	251	188	118	94	63	47	27	15	13	9	3	7	3	2				1																																																																																						1287
CAA	-	-	12	6		3	1	3	5	2			1														1						1																																																																										35
CAC	-	-	4																																																																																																								4
CAT	-	-	20	6	6	1	2			1																																																																																																	36
CCA	-	-	3	1																																																																																																							4
CGA	-	-	2	1																																																																																																							3
CGC	-	-		1																																																																																																							1
CGT	-	-	2	1																																																																																																							3
CTA	-	-	4	3		2																																																																																																					9
CTC	-	-				1																																																																																																					1
CTT	-	-	9	9	4			2	3				1																																																																																														28
GAA	-	-	28	22	7	1	5			1																																																																																																	64
GAC	-	-		1																																																																																																							1
GAG	-	-	5	1		1	2																																																																																																				9
GAT	-	-	62	24	11	7	1	1	1		1																																																																																																108
GGA	-	-	1		1																																																																																																						2
GGT	-	-	2	2	1																																																																																																						5
GTA	-	-	26	3	5		1		1																																																																																																		36
GTC	-	-		3																																																																																																							3
GTG	-	-	2		1																																																																																																						3
GTT	-	-	6	7	2	3	1						1																																																																																														20
TAA	-	-	248	147	115	87	69	40	15	10	8	2	2	2	3	2	2		1																																																																																								753
TAC	-	-	42	13	8		2		4			1	1		1																	1																																																																											73
TAG	-	-	18	12	6	6	1	1	2		1				1			1																																																																																									49
TAT	-	-	447	276	251	173	125	76	33	16	12	14	6	4		1			1																																																																																								1435
TCA	-	-	60	19	13	5	2	2																																																																																																			101
TCC	-	-	4	2	1																																																																																																						7
TCT	-	-	27	20	6	5	3	3																																																																																																			64
TGA	-	-	26	6	2	6			2	2			1	1																			1																																																																										47
TGG	-	-	3																																																																																																								3
TGT	-	-	15	1	9	5	2	1			1	2			1			1																				1																																																																					39
TTA	-	-	350	174	142	98	60	42	30	27	7	16	8	2	1	4	1					3		1				1																																																																															967
TTC	-	-	38	16	6	5	1										1																																																																																										67
TTG	-	-	25	22	3	7	5	1	2	1	3			1				1																																																																																									71
AAAC	-	20	2	3																																																																																																							25
AAAG	-	14	5	2		3																																																																																																					24
AAAT	-	417	199	141	49	23	18	6	6	1																																																																																																	860
AACA	-	2																																																																																																									2
AAGA	-	7		3	2																																																																																																						12
AAGT	-							1																																																																																																			1
AATA	-	250	155	76	41	27	4	10	2	1	1																																																																																																567
AATC	-	1	1																																																																																																								2
AATG	-	1	2	2			1																																																																																																				6
AATT	-	1																																																																																																									1
ACAA	-	4	3																																																																																																								7
ACAT	-	30	9	2	2	2	3					1																																																																																															49
AGAA	-	5		2																																																																																																							7
ATAA	-	421	172	84	51	21	17	5	1	2	1		2																																																																																														777
ATAC	-	52	36	14	5	3	1	4	6	1		2	3			1		1	1																1																																																																								131
ATCC	-	1										1																																																																																															2
ATGA	-	2		1																																																																																																							3
ATGC	-	2																																																																																																									2
ATGT	-	15	10	2		1	3				1							1					1																																																																																				34
ATTA	-	7																																																																																																									7
ATTC	-	1	3	2																																																																																																							6
ATTT	-	224	143	62	28	7	4	3	1				2																																																																																														474
CATA	-	17	5	2	2														1	1					1																																																																																		29
CCAT	-						1																																																																																																				1
CTTT	-		1																																																																																																								1
GAAA	-	3	1	4	1			2																																																																																																			11
GAAG	-	1																																																																																																									1
GAAT	-	4	2	1																																																																																																							7
GATA	-	2																																																																																																									2
GGAA	-	1																																																																																																									1
GGAT	-				2																																																																																																						2
GTAT	-	24	6	3	4																																																																																																						37
GTTT	-	7																																																																																																									7
TAAA	-	139	83	37	18	8	2				1																																																																																																288
TAAC	-	1																																																																																																									1
TAAT	-	4	2																																																																																																								6
TACA	-	14	1	3	2		1											1																																																																																									22
TACT	-	1																																																																																																									1
TAGA	-	1																																																																																																									1
TATC	-	3	1																																																																																																								4
TATG	-	51	12	14	8	1	1		2	2		1														1																																																																																	93
TATT	-	482	248	122	58	38	12	4	1																																																																																																		965
TCAT	-		2																																																																																																								2
TCCC	-	1																																																																																																									1
TCTA	-	1																																																																																																									1
TCTT	-	3	1	2		1																																																																																																					7
TGAA	-	2	2																																																																																																								4
TGTA	-	24	7	2	3	1		2			1					1																																																																																											41
TGTT	-	3																																																																																																									3
TTAA	-	3	2																																																																																																								5
TTAT	-	298	120	58	34	11	4	2	2																																																																																																		529
TTCA	-	1																																																																																																									1
TTCC	-	3																																																																																																									3
TTCT	-	3			1									1																																																																																													5
TTGA	-	1	1																																																																																																								2
TTGC	-	2																																																																																																									2
TTGT	-	3						1																																																																																																			4
TTTA	-	325	117	82	36	11	9	3	2	4	1	1																																																																																															591
TTTC	-	23	9	2	4	1																																																																																																					39
TTTG	-	9	6		3			1						2																																																																																													21
AAAAC	25	8	3	2																																																																																																							38
AAAAG	54	16	1	2																																																																																																							73
AAAAT	408	149	65	15	7		1	1		1	1																																																																																																648
AAACA	8	1		1																																																																																																							10
AAAGA	4	3	1																																																																																																								8
AAAGC	3		2																																																																																																								5
AAAGG		1																																																																																																									1
AAATA	162	51	29	7	3																																																																																																						252
AAATC	3		2																																																																																																								5
AAATG	12	4																																																																																																									16
AAATT	12	6	3	1																																																																																																							22
AACAA	3																																																																																																										3
AACAC				1																																																																																																							1
AACAG	3																																																																																																										3
AACAT				1																																																																																																							1
AAGAA	15	4	1																																																																																																								20
AAGAT	1																																																																																																										1
AAGGA		1																																																																																																									1
AATAA	161	34	12	1		1																																																																																																					209
AATAC	8	6	1																																																																																																								15
AATAG	5																																																																																																										5
AATAT	73	27	15	7	4	3					3	1		1			1																																																																																										135
AATGA	1	2																																																																																																									3
AATGG	103	37	20	12	14	13	15	10	7	2	5	4	3		1		2			1																																																																																							249
AATGT	1																																																																																																										1
AATTA	4	2																																																																																																									6
AATTC	2																																																																																																										2
AATTG	2	2	2																																																																																																								6
ACAAA	6	1	2																																																																																																								9
ACAAG	1																																																																																																										1
ACAAT			1																																																																																																								1
ACACA	2																																																																																																										2
ACATC	1																																																																																																										1
ACATG		1																																																																																																									1
AGAAA	20	2				1																																																																																																					23
AGAAC	2																																																																																																										2
AGAAG	1																																																																																																										1
AGAAT	1																																																																																																										1
AGGAA	1	1																																																																																																									2
AGTAT	1																																																																																																										1
ATAAA	118	27	10						1	1																																																																																																	157
ATAAC	3																																																																																																										3
ATAAG	1	2																																																																																																									3
ATAAT	74	19	6	8	1		1		1	1	1					1																																																																																											113
ATACA	2																																																																																																										2
ATACT	3																																																																																																										3
ATAGA	2																																																																																																										2
ATATA	295	44	16	6	1	1	1		5	1	1	1	1				1	1		1																																																																																							376
ATATC	1			1																																																																																																							2
ATATG	10	2																																																																																																									12
ATATT	73	11	7	2		1				1							1																																																																																										96
ATCAA	1																																																																																																										1
ATCAT	1																																																																																																										1
ATCTC	2																																																																																																										2
ATGAA	2		1																																																																																																								3
ATGAG	3																																																																																																										3
ATGGA	8	2	2	1	3	2	1	2																																																																																																			21
ATTAA	3	1																																																																																																									4
ATTAC	1																																																																																																										1
ATTAT	50	14	4	6			2		1	1			1																																																																																														79
ATTCC	75	59	48	27	29	37	42	31	21	17	17	14	13	4	6	2	8	3	4	3		2		1		1	1																																																																																465
ATTCT	1																																																																																																										1
ATTTA	7		2																																																																																																								9
ATTTC	12	3																																																																																																									15
ATTTG	2	1																																																																																																									3
ATTTT	121	34	24	7	1	1																																																																																																					188
CAAAA	5	2																																																																																																									7
CAAAG			1																																																																																																								1
CAAGA	1																																																																																																										1
CAATA	1																																																																																																										1
CACCA	1																																																																																																										1
CATAA	6																																																																																																										6
CATAT	3																																																																																																										3
CATCA	11																																																																																																										11
CATTA	1																																																																																																										1
CATTC	90	73	23	20	12	13	8	10	5	5	5	1	5	2	2	1	1	1	1		1																																																																																						279
CATTT	1			1																																																																																																							2
CCACA	1																																																																																																										1
CCATT	15	7	6		1	2		3	1			1			1				1																																																																																								38
CCGTT	1																																																																																																										1
CGTTC	1																																																																																																										1
CTTTC	1	1																																																																																																									2
CTTTT	13	4	1	2																																																																																																							20
GAAAA	35	9	5	1																																																																																																							50
GAAAG	1	1																																																																																																									2
GAAAT	4	1	2																																																																																																								7
GAACG	3	2	1	1																																																																																																							7
GAATG	155	63	48	16	20	15	13	14	6	8	10	2	3	4	3	1	2	1		2	1				1	1	1																																																																																390
GAATT		2																																																																																																									2
GATTT	2																																																																																																										2
GCCAA	1																																																																																																										1
GGAAT	48	88	22	19	25	16	12	5	9	3	3		2	3	2	5	2	1	2	3			1																																																																																				271
GGTAA	1																																																																																																										1
GTATA	1																																																																																																										1
GTGGT	2																																																																																																										2
GTGTG	1																																																																																																										1
GTTTG		1																																																																																																									1
GTTTT	1	1	1																																																																																																								3
TAAAA	76	23	14		2																																																																																																						115
TAAAT	5	1	1																																																																																																								7
TAAGT	1																																																																																																										1
TAATA	25	11	1	1						1			1																																																																																														40
TAATG	2																																																																																																										2
TAATT	7	2																																																																																																									9
TATAA	55	24	1	3								2	1																																																																																														86
TATAC	4																																																																																																										4
TATAT	268	30	15	5		6	2	1						1	1		2																																																																																										331
TATCT		1																																																																																																									1
TATGT	8																																																																																																										8
TATTA	83	16	11	9	4	1	3		1	1																																																																																																	129
TATTC	4																																																																																																										4
TATTG		5	2																																																																																																								7
TATTT	136	56	29	7	3	4	3		1	1																																																																																																	240
TCATA	1	1																																																																																																									2
TCATT	3																																																																																																										3
TCCAT	31	16	6	3	6	3	6	2	2		1	3	1				2																																																																																										82
TCTTC	1																																																																																																										1
TCTTT	8																																																																																																										8
TGAAA	1	3		1																																																																																																							5
TGATA		1	3																																																																																																								4
TGATG	12																																																																																																										12
TGATT	2																																																																																																										2
TGGAA	46	35	32	7	11	17	23	4	4	3	3	4	2	5	2	1		2	2		1																																																																																						204
TGTAT		1																																																																																																									1
TGTGT				2																																																																																																							2
TGTTA	2																																																																																																										2
TGTTG	2																																																																																																										2
TGTTT	10	1	1																																																																																																								12
TTAAA	3	2																																																																																																									5
TTAAT	4	2																																																																																																									6
TTATA	65	10	3	4	1	1	1		1					1				1																																																																																									88
TTATC	1																																																																																																										1
TTATG	3																																																																																																										3
TTATT	199	57	25	8	3		1						1																																																																																														294
TTCAT	3																																																																																																										3
TTCCA	101	56	34	11	10	9	3	2	2	1	1	1	1	1	1			1			1																																																																																						236
TTCTA	1																																																																																																										1
TTCTC	1																																																																																																										1
TTCTG	1																																																																																																										1
TTCTT	18	2			1																																																																																																						21
TTGAT	1																																																																																																										1
TTGGC	1																																																																																																										1
TTGTA	2	1																																																																																																									3
TTGTT	5	2	1																																																																																																								8
TTTAA	6	1		1																																																																																																							8
TTTAT	167	82	28	9	2						1																																																																																																289
TTTCA	4	2		1																																																																																																							7
TTTCC	1	1																																																																																																									2
TTTCT	18	3	4																																																																																																								25
TTTGA	1																																																																																																										1
TTTGC	2																																																																																																										2
TTTGT	11	1	3																																																																																																								15
TTTTA	271	94	25	10	4	2																																																																																																					406
TTTTC	83	18	3	4																																																																																																							108
TTTTG	21	9	2																																																																																																								32
AAAAAC	4	5	1		1																																																																																																						11
AAAAAG	38	7	3													1																																																																																											49
AAAAAT	102	25	2	1	2																																																																																																						132
AAAACA			1																																																																																																								1
AAAAGA	12	5	2																																																																																																								19
AAAAGG	2																																																																																																										2
AAAATA	45	15																																																																																																									60
AAAATC	3																																																																																																										3
AAAATG	12	5																																																																																																									17
AAAATT	2			1																																																																																																							3
AAACAT	2	1	2			1																																																																																																					6
AAAGAA	9	3																																																																																																									12
AAAGAC		2																																																																																																									2
AAAGAG	2	1																																																																																																									3
AAAGAT	6																																																																																																										6
AAAGGA	1	1										1																																																																																															3
AAAGGT		1																																																																																																									1
AAAGTA		2																																																																																																									2
AAATAA	21	1	1																																																																																																								23
AAATAC	1																																																																																																										1
AAATAG	1																																																																																																										1
AAATAT	59	9					1																																																																																																				69
AAATCA		1																																																																																																									1
AAATGA	5	2																																																																																																									7
AAATGT		1																																																																																																									1
AAATTA	1																																																																																																										1
AACAAA		1																																																																																																									1
AACATA		2																																																																																																									2
AACATG			1																																																																																																								1
AACCCT	3		1																																																																																																								4
AACTAT	1																																																																																																										1
AAGAAA	13	7																																																																																																									20
AAGAAC		2																																																																																																									2
AAGAAT	1																																																																																																										1
AAGAGC				1																																																																																																							1
AAGAGG	1																																																																																																										1
AAGGAA	3																																																																																																										3
AAGGAG	2																																																																																																										2
AAGGAT	6																																																																																																										6
AAGGTC	1																																																																																																										1
AATAAA	24	2																																																																																																									26
AATAAC	5	2	3																																																																																																								10
AATAAG	3																																																																																																										3
AATAGT	2																																																																																																										2
AATATA	31	2	1																																																																																																								34
AATATC	1																																																																																																										1
AATATT	6																																																																																																										6
AATCAA	1																																																																																																										1
AATCAG			1																																																																																																								1
AATGAA	2																																																																																																										2
AATGAT	2																																																																																																										2
AATGGA	1																																																																																																										1
AATGTA		1																																																																																																									1
AATGTC	1																																																																																																										1
AATGTG	1																																																																																																										1
AATGTT	3																																																																																																										3
AATTAA	1																																																																																																										1
AATTAC			1																																																																																																								1
AATTAT	6	4			1																																																																																																						11
AATTTT	3																																																																																																										3
ACAAAA	2																																																																																																										2
ACAAAC	1	2																																																																																																									3
ACAAAT	4	1	1																																																																																																								6
ACAATA		1																																																																																																									1
ACAATT		2																																																																																																									2
ACACAT		1	1																																																																																																								2
ACATAA	2		2																																																																																																								4
ACATAT	8																																																																																																										8
ACATCT	1																																																																																																										1
ACATGT		1																																																																																																									1
ACATTA	3																																																																																																										3
ACCCTA	1																																																																																																										1
ACGATG			1																																																																																																								1
ACTATT	7	1																																																																																																									8
AGAAAA	5	1	2																																																																																																								8
AGAAAC	1																																																																																																										1
AGAAAT	1																																																																																																										1
AGAAGG	1	1																																																																																																									2
AGAGAA	4																																																																																																										4
AGATAA	1	2																																																																																																									3
AGATAT	1																																																																																																										1
AGGAAG		1																																																																																																									1
AGGATA	1																																																																																																										1
AGGTAA	1																																																																																																										1
AGTAAT		1																																																																																																									1
ATAAAA	23																																																																																																										23
ATAAAC	6	2		2											1																																																																																												11
ATAAAG	3																																																																																																										3
ATAAAT	107	20	3	1		1																																																																																																					132
ATAATC	4																																																																																																										4
ATAATG	6	2																																																																																																									8
ATAATT	10	4																																																																																																									14
ATACAC		2																																																																																																									2
ATACAT	5		1																																																																																																								6
ATAGGA	1																																																																																																										1
ATAGTA		1																																																																																																									1
ATATAA	84	11	2																																																																																																								97
ATATAC	8	1																																																																																																									9
ATATAG	3												1																																																																																														4
ATATGC	1																																																																																																										1
ATATGT	3	2	3																																																																																																								8
ATATTA	1																																																																																																										1
ATATTC	1	1																																																																																																									2
ATATTT	40	3		1																																																																																																							44
ATCAGC	1																																																																																																										1
ATCATA				1																																																																																																							1
ATCATG	4																																																																																																										4
ATCATT	14																																																																																																										14
ATCGTC	1																																																																																																										1
ATCTAT	1																																																																																																										1
ATCTTT	2																																																																																																										2
ATGAAA	1																																																																																																										1
ATGAAC	3																																																																																																										3
ATGAAG	1																																																																																																										1
ATGAAT	1	1																																																																																																									2
ATGATA	6	5					1																																																																																																				12
ATGATC	3																																																																																																										3
ATGATT	1																																																																																																										1
ATGTAA		1	1																																																																																																								2
ATGTAT		3																																																																																																									3
ATGTGT		2																																																																																																									2
ATGTTC	1									1			1																																																																																														3
ATGTTT	1	3																																																																																																									4
ATTAAA	3																																																																																																										3
ATTAAC	1																																																																																																										1
ATTAAT	15																																																																																																										15
ATTACA	1																																																																																																										1
ATTACT	1	1																																																																																																									2
ATTAGC		1																																																																																																									1
ATTATA	8	2			1																																																																																																						11
ATTATC	12	1																																																																																																									13
ATTATG		2																																																																																																									2
ATTGTT	1	1										1																																																																																															3
ATTTAA	1																																																																																																										1
ATTTAC	11			1																																																																																																							12
ATTTAT	25	3																																																																																																									28
ATTTGC		1																																																																																																									1
ATTTGT			1																																																																																																								1
ATTTTA		1																																																																																																									1
ATTTTC	12	3																																																																																																									15
ATTTTG	3																																																																																																										3
ATTTTT	39	11			1																																																																																																						51
CAAAAA				2																																																																																																							2
CAAAAT	1																																																																																																										1
CAATAA	1																																																																																																										1
CAATAC	1																																																																																																										1
CACCAT	1																																																																																																										1
CAGAAA	1																																																																																																										1
CATAAA	2																																																																																																										2
CATATA	4																																																																																																										4
CATCAA	2																																																																																																										2
CATCAC	2																																																																																																										2
CATCCC		1																																																																																																									1
CATGAG			1																																																																																																								1
CATGAT	1	1																																																																																																									2
CATTAA	2		2																																																																																																								4
CATTAT	2		1	1																																																																																																							4
CATTCA	2																																																																																																										2
CATTTA			1																																																																																																								1
CATTTC	2	2	1									1																																																																																															6
CATTTT		1																																																																																																									1
CCATTA	1																																																																																																										1
CCATTT	1																																																																																																										1
CCGCCT			1																																																																																																								1
CCTAAA	4	1	1																																																																																																								6
CCTTTA	1	1																																																																																																									2
CTATTA	2																																																																																																										2
CTTATT	1																																																																																																										1
CTTCAC	1																																																																																																										1
CTTCAT	1																																																																																																										1
CTTCCT		1																																																																																																									1
CTTCTC		2																																																																																																									2
CTTGTT	2																																																																																																										2
CTTTTA		2																																																																																																									2
CTTTTC		3																																																																																																									3
CTTTTT	4	2																																																																																																									6
GAAAAA	32	2			1																																																																																																						35
GAAAAC	3																																																																																																										3
GAAAAG	7		2																																																																																																								9
GAAAAT	7																																																																																																										7
GAAAGA	1																																																																																																										1
GAAATA	2					1				1																																																																																																	4
GAAATT	1																																																																																																										1
GAACCT			1																																																																																																								1
GAAGAC	1																																																																																																										1
GAAGAG	2																																																																																																										2
GAAGAT		4	1																																																																																																								5
GAATAA	2																																																																																																										2
GAATAT	1	1																																																																																																									2
GACAAA		1																																																																																																									1
GACTCA		1																																																																																																									1
GAGAAA	3	3																																																																																																									6
GATAAA	4																																																																																																										4
GATAAT	4																																																																																																										4
GATAGA		2																																																																																																									2
GATATA	2																																																																																																										2
GATGAA	3	2																																																																																																									5
GATGAC	2	1																																																																																																									3
GATGTA	1																																																																																																										1
GCATTT	1																																																																																																										1
GCTAAT	1																																																																																																										1
GGAAAA	2													1																																																																																													3
GGAAAG	1																																																																																																										1
GGTCTT	1																																																																																																										1
GGTGAA	5																																																																																																										5
GGTTCA			1																																																																																																								1
GGTTGT	1																																																																																																										1
GGTTTA	11																																																																																																										11
GTAAAT		1																																																																																																									1
GTAATA	1	2																																																																																																									3
GTATAT	2																																																																																																										2
GTATTA	2																																																																																																										2
GTCTTC		1																																																																																																									1
GTGATG	1																																																																																																										1
GTGTTA						2																																																																																																					2
GTGTTG	2																																																																																																										2
GTTATC	4																																																																																																										4
GTTCTT	1																																																																																																										1
TAAAAA	16	9	2																																																																																																								27
TAAAAT	3																																																																																																										3
TAAACA	1	2	2		1																																																																																																						6
TAAAGA	1																																																																																																										1
TAAAGG	1																																																																																																										1
TAAATA	20	3	2																																																																																																								25
TAAATG	1	1																																																																																																									2
TAAATT	2																																																																																																										2
TAACAA		1																																																																																																									1
TAACCC	1																																																																																																										1
TAACTA	2																																																																																																										2
TAATAG	2	7	1																																																																																																								10
TAATAT	2																																																																																																										2
TAATGA	8																																																																																																										8
TAATGG	1																																																																																																										1
TAATGT	4																																																																																																										4
TAATTA	5	1																																																																																																									6
TAATTG	2	1																																																																																																									3
TAATTT	1																																																																																																										1
TACATT		1																																																																																																									1
TACTAT		2																																																																																																									2
TAGAAC		1																																																																																																									1
TAGATA	1																																																																																																										1
TAGGGT						1																																																																																																					1
TAGTAA		1																																																																																																									1
TATAAA	9	3																																																																																																									12
TATAAT	4	1																																																																																																									5
TATACA	1																																																																																																										1
TATATC	2																																																																																																										2
TATATG	6																																																																																																										6
TATATT	71	22	1	1	1																																																																																																						96
TATCAT	2	1																																																																																																									3
TATCTT	7																																																																																																										7
TATGTA	9																																																																																																										9
TATGTT	8		1																																																																																																								9
TATTAA	7	1																																																																																																									8
TATTAC	13	1	1																																																																																																								15
TATTCA	1																																																																																																										1
TATTCT			1																																																																																																								1
TATTGT	2					2																																																																																																					4
TATTTA	82	13	3	1																																																																																																							99
TATTTG	2	1																																																																																																									3
TATTTT	33	15		1																																																																																																							49
TCAAGC	2																																																																																																										2
TCATAT	1																																																																																																										1
TCATCT		1																																																																																																									1
TCATTA	4																																																																																																										4
TCATTG	1																																																																																																										1
TCATTT	1	4																																																																																																									5
TCCATT	1																																																																																																										1
TCCTCA	3																																																																																																										3
TCCTCT		2																																																																																																									2
TCCTTC		1																																																																																																									1
TCGTCA	1	1																																																																																																									2
TCTATA	2																																																																																																										2
TCTCTA	2																																																																																																										2
TCTGTA				1																																																																																																							1
TCTTCA	1	1																																																																																																									2
TCTTCC	2																																																																																																										2
TCTTCG	1																																																																																																										1
TCTTGT		1																																																																																																									1
TCTTTA	8																																																																																																										8
TCTTTC	2																																																																																																										2
TCTTTG	1	3																																																																																																									4
TCTTTT	6	3																																																																																																									9
TGAAAA	3																																																																																																										3
TGAACA	2																																																																																																										2
TGAATG	1																																																																																																										1
TGATAA				2																																																																																																							2
TGATGG	4																																																																																																										4
TGATGT		1																																																																																																									1
TGATTT	1																																																																																																										1
TGCTCT		1		4																																																																																																							5
TGTATA	3		1																																																																																																								4
TGTATG					1																																																																																																						1
TGTATT	1																																																																																																										1
TGTGCT		1																																																																																																									1
TGTGTA	4																																																																																																										4
TGTGTT	3		1																																																																																																								4
TGTTAT	1																																																																																																										1
TGTTCA	1																																																																																																										1
TGTTCT	1																																																																																																										1
TGTTTA					1																																																																																																						1
TGTTTG		1																																																																																																									1
TGTTTT		1																																																																																																									1
TTAAAA	1	2																																																																																																									3
TTAAAT	1																																																																																																										1
TTAATA	1																																																																																																										1
TTAATT	1																																																																																																										1
TTACTA		1																																																																																																									1
TTAGGG	2						1										1																																																																																										4
TTATAT	22																																																																																																										22
TTATCA	3																																																																																																										3
TTATCC	1																																																																																																										1
TTATCT	3																																																																																																										3
TTATGA	1																																																																																																										1
TTATTC	1																																																																																																										1
TTATTG	4	4																																																																																																									8
TTATTT	33	8																																																																																																									41
TTCATA		2																																																																																																									2
TTCATT	2																																																																																																										2
TTCCTT	3																																																																																																										3
TTCTAT	1																																																																																																										1
TTCTCC	1																																																																																																										1
TTCTCT	2																																																																																																										2
TTCTGA			1																																																																																																								1
TTCTTA	3																																																																																																										3
TTCTTT	17		1																																																																																																								18
TTGTAA			1																																																																																																								1
TTGTCC	1																																																																																																										1
TTGTCT	3																																																																																																										3
TTGTGT	2																																																																																																										2
TTGTTA	3	2																																																																																																									5
TTGTTC		3																																																																																																									3
TTGTTT	2																																																																																																										2
TTTAAA	1																																																																																																										1
TTTAAT	2																																																																																																										2
TTTATA	47	3	1																																																																																																								51
TTTATC	1																																																																																																										1
TTTATG	13	3			1																																																																																																						17
TTTATT	38	7																																																																																																									45
TTTCAT	3	1																																																																																																									4
TTTCTA	1																																																																																																										1
TTTCTG	3																																																																																																										3
TTTCTT	22	5	1																																																																																																								28
TTTGTA	1	2																																																																																																									3
TTTGTG		2																																																																																																									2
TTTGTT			1																																																																																																								1
TTTTAA	3	2																																																																																																									5
TTTTAC	1																																																																																																										1
TTTTAT	26	6	1																																																																																																								33
TTTTCA	3	1	1																																																																																																								5
TTTTCC	4	2																																																																																																									6
TTTTCT	15	3																																																																																																									18
TTTTGT	1	2		2																																																																																																							5
TTTTTA	58	18	2		1	1																																																																																																					80
TTTTTC	46	12	3																																																																																																								61
TTTTTG	7	1				2																																																																																																					10

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1311	1162	1045	948	877	788	797	699	645	570	534	423	352	325	288	259	231	211	179	174	130	131	105	93	80	81	66	60	72	53	52	39	48	46	34	35	48	34	21	27	12	25	17	28	19	9	19	14	16	16	18	14	6	12	12	7	10	9	9	7	14	6	14	6	4	2	6	6	2	3	6	4	5	1	1	1	1			1			1				2		1	13439
AC/GT	-	-	-	183	60	38	16	10		3																																																																																																	310
AG/CT	-	-	-	22	12	9	3	4		1																																																																																																	51
AT/AT	-	-	-	7300	4675	3709	3364	3274	3101	2781	2592	2410	2023	1551	1267	989	785	587	406	310	187	140	88	59	34	18	15	8	9	8	4	7	2	1			2	2			1																																																																		41709
CG/CG	-	-	-	3																																																																																																							3
AAC/GTT	-	-	102	51	25	28	15	9	9	4	7	3	3	2	1		1	3									1						1					1																																																																					266
AAG/CTT	-	-	136	88	29	17	11	7	3	1			1				1																																																																																										294
AAT/ATT	-	-	2553	1420	1115	828	568	349	209	127	83	82	40	20	13	11	8		4		1	3	1	1				1																																																																															7437
ACC/GGT	-	-	16	4	2																																																																																																						22
ACG/CGT	-	-	4	6																																																																																																							10
ACT/AGT	-	-	103	42	32	8	5	5	7		1	1	1		2			1														1																																																																											209
AGG/CCT	-	-	11	5	2	2	2																																																																																																				22
ATC/ATG	-	-	285	109	52	23	9	6	4	4	1		1	1									1						1				1																																																																										498
CCG/CGG	-	-		1																																																																																																							1
AAAC/GTTT	-	48	11	3	3			2						2																																																																																													69
AAAG/CTTT	-	58	17	15	8	5		2						1																																																																																													106
AAAT/ATTT	-	2556	1237	662	315	146	70	33	15	8	4	1	4																																																																																														5051
AACT/AGTT	-	1																																																																																																									1
AAGC/CTTG	-	2																																																																																																									2
AAGG/CCTT	-	5																																																																																																									5
AAGT/ACTT	-	1						1																																																																																																			2
AATC/ATTG	-	2	2																																																																																																								4
AATG/ATTC	-	11	11	6			1																																																																																																				29
AATT/AATT	-	15	4																																																																																																								19
ACAT/ATGT	-	227	86	42	26	8	9	6	8	3	2	4	3			2		3	2	1			1		1	1									1																																																																								436
AGAT/ATCT	-	7	1																																																																																																								8
AGGG/CCCT	-	1																																																																																																									1
ATCC/ATGG	-	1			2		1					1																																																																																															5
ATGC/ATGC	-	2																																																																																																									2
AAAAC/GTTTT	95	26	13	3																																																																																																							137
AAAAG/CTTTT	268	61	16	9	1	1																																																																																																					356
AAAAT/ATTTT	1819	607	261	64	25	8	5	1	2	3	2		1																																																																																														2798
AAACC/GGTTT		1																																																																																																									1
AAAGC/CTTTG	5		3																																																																																																								8
AAAGG/CCTTT	4	6																																																																																																									10
AAATC/ATTTG	12	1	2																																																																																																								15
AAATG/ATTTC	43	15	3	3																																																																																																							64
AAATT/AATTT	51	17	6	2																																																																																																							76
AACAC/GTGTT	4			3																																																																																																							7
AACAG/CTGTT	6																																																																																																										6
AACAT/ATGTT	22			1																																																																																																							23
AACGG/CCGTT	5	2	1	1																																																																																																							9
AACTT/AAGTT	1																																																																																																										1
AAGAC/CTTGT	2																																																																																																										2
AAGAG/CTCTT	3																																																																																																										3
AAGAT/ATCTT	3	3																																																																																																									6
AAGCC/CTTGG	2																																																																																																										2
AAGGT/ACCTT	1																																																																																																										1
AATAC/ATTGT	13	13	4																																																																																																								30
AATAG/ATTCT	14																																																																																																										14
AATAT/ATATT	1061	206	79	51	11	13	10	1	9	6	5	4	4	3	1	1	5	2		1																																																																																							1473
AATGG/ATTCC	672	436	241	116	131	127	123	83	57	39	45	30	30	19	18	10	17	9	10	9	4	2	1	1	1	2	2																																																																																2235
AATGT/ACATT	5																																																																																																										5
AATTC/AATTG	4	4	2																																																																																																								10
ACACC/GGTGT	5																																																																																																										5
ACATC/ATGTG	24																																																																																																										24
ACATG/ATGTC		1																																																																																																									1
ACTAT/AGTAT	9																																																																																																										9
AGATG/ATCTC	5																																																																																																										5
ATATC/ATATG	16	4	3	1																																																																																																							24
AAAAAC/GTTTTT	16	10	3	4	1	2																																																																																																					36
AAAAAG/CTTTTT	219	50	12		1											1																																																																																											283
AAAAAT/ATTTTT	458	117	8	2	4	1																																																																																																					590
AAAACG/CGTTTT	3																																																																																																										3
AAAAGG/CCTTTT	22	6	2									1		1																																																																																													32
AAAAGT/ACTTTT	1	4																																																																																																									5
AAAATC/ATTTTG	9	1																																																																																																									10
AAAATG/ATTTTC	51	17	1																																																																																																								69
AAAATT/AATTTT	21	5		1																																																																																																							27
AAACAC/GTGTTT	6	5	1																																																																																																								12
AAACAG/CTGTTT	5																																																																																																										5
AAACAT/ATGTTT	35	13	7	2	3	1									1																																																																																												62
AAACCT/AGGTTT	15	1	1																																																																																																								17
AAAGAC/CTTTGT	4	6																																																																																																									10
AAAGAG/CTCTTT	14	4																																																																																																									18
AAAGAT/ATCTTT	36	2																																																																																																									38
AAAGGG/CCCTTT	1																																																																																																										1
AAAGGT/ACCTTT	3	2																																																																																																									5
AAATAC/ATTTGT	9	4	2																																																																																																								15
AAATAG/ATTTCT	6					1				1																																																																																																	8
AAATAT/ATATTT	597	92	13	4	1	1	1																																																																																																				709
AAATGC/ATTTGC	1	1																																																																																																									2
AAATGG/ATTTCC	5	2	1									1																																																																																															9
AAATGT/ACATTT	12	6	2	1																																																																																																							21
AAATTG/AATTTC	1																																																																																																										1
AAATTT/AAATTT	5																																																																																																										5
AACAAG/CTTGTT	4	6																																																																																																									10
AACAAT/ATTGTT	17	11	3			2						1																																																																																															34
AACACC/GGTGTT	2																																																																																																										2
AACACT/AGTGTT						2																																																																																																					2
AACATC/ATGTTG	2	1																																																																																																									3
AACATG/ATGTTC	7		1							1			1																																																																																														10
AACATT/AATGTT	13		2																																																																																																								15
AACCAC/GGTTGT	1																																																																																																										1
AACCCT/AGGGTT	7		1			1	1										1																																																																																										11
AACCTG/AGGTTC			2																																																																																																								2
AACGAT/ATCGTT	4																																																																																																										4
AACTAG/AGTTCT		1																																																																																																									1
AACTAT/AGTTAT	3																																																																																																										3
AAGAAT/ATTCTT	11		1																																																																																																								12
AAGACC/CTTGGT	1																																																																																																										1
AAGACG/CGTCTT	2	1																																																																																																									3
AAGAGC/CTCTTG		1		5																																																																																																							6
AAGAGG/CCTCTT	5	4																																																																																																									9
AAGATG/ATCTTC	6	8	1																																																																																																								15
AAGCAC/CTTGTG		1																																																																																																									1
AAGCTC/AGCTTG	2																																																																																																										2
AAGGAC/CCTTGT	1																																																																																																										1
AAGGAG/CCTTCT	4	4																																																																																																									8
AAGGAT/ATCCTT	8																																																																																																										8
AAGGTC/ACCTTG	1																																																																																																										1
AAGGTG/ACCTTC	6																																																																																																										6
AATACC/ATTGGT	1																																																																																																										1
AATACT/AGTATT	2																																																																																																										2
AATAGG/ATTCCT	1																																																																																																										1
AATAGT/ACTATT	28	18	2																																																																																																								48
AATATC/ATATTG	1																																																																																																										1
AATATG/ATATTC	5	5																																																																																																									10
AATATT/AATATT	32	1																																																																																																									33
AATCAG/ATTCTG			2																																																																																																								2
AATCAT/ATGATT	6	2		1																																																																																																							9
AATGAC/ATTGTC	1																																																																																																										1
AATGAT/ATCATT	63	9	1	3			1																																																																																																				77
AATGCT/AGCATT	1	1																																																																																																									2
AATGGT/ACCATT	2																																																																																																										2
AATGTC/ACATTG	1																																																																																																										1
AATGTG/ACATTC	4																																																																																																										4
AATTAC/AATTGT	3	3	2																																																																																																								8
AATTAT/AATTAT	33	12			2																																																																																																						47
ACACAT/ATGTGT	4	5	1		1																																																																																																						11
ACAGAT/ATCTGT				1																																																																																																							1
ACATAT/ATATGT	49	6	5																																																																																																								60
ACATCT/AGATGT	2																																																																																																										2
ACATGT/ACATGT		1																																																																																																									1
ACCATC/ATGGTG	8																																																																																																										8
ACGATG/ATCGTC	4	2	1																																																																																																								7
ACTCAG/AGTCTG		1																																																																																																									1
AGAGAT/ATCTCT	2	2																																																																																																									4
AGATAT/ATATCT	12												1																																																																																														13
AGCATC/ATGCTG	1																																																																																																										1
AGCATG/ATGCTC			1																																																																																																								1
AGGATG/ATCCTC	3																																																																																																										3
AGGCGG/CCGCCT			1																																																																																																								1
ATATGC/ATATGC	1																																																																																																										1
ATCATG/ATCATG	8	1																																																																																																									9
ATCCCC/ATGGGG		1																																																																																																									1
