Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_001861165.1/fasta/hub_GCA_001861165.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1447
Total size of examined sequences (bp):           28145742
Total number of identified SSRs:                 84578
Number of SSR containing sequences:              1321
Number of sequences containing more than 1 SSR:  1259
Number of SSRs present in compound formation:    35947


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	13302
2	48476
3	7631
4	6439
5	6168
6	2562

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	169	170	171	172	173	174	175	176	177	178	179	180	181	182	183	184	185	186	187	188	189	190	191	192	193	194	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	823	779	668	616	575	504	485	433	372	276	232	187	152	143	131	112	100	77	56	33	21	17	12	3	11	3	2	5	1	2	3	1	2	1	3	2				1						1	1	1			1						1																			1													1								1										1											1																																																										6854
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	786	690	635	625	537	505	453	379	365	281	189	180	125	127	93	111	87	77	60	25	15	13	8	15	6	7	5	2	3	3	6	3	3	3	1	2	1		1	2			1				2			1	1				1					1			2			1	1						1									1							2																						1															1																		1																															1	6448
AC	-	-	-	28	17	13	2	2	1	1																																																																																																																																																																																							64
AG	-	-	-	5	4		4	1		1																																																																																																																																																																																							15
AT	-	-	-	4975	3093	2566	2421	2203	2119	2046	1803	1617	1467	1122	1038	825	661	536	421	332	204	158	108	72	36	24	16	12	7	1	4	2	1	1	2																																																																																																																																																														29893
CA	-	-	-	51	3	5	1	1	1																																																																																																																																																																																								62
CT	-	-	-	5	3	1																																																																																																																																																																																											9
GA	-	-	-	8	2	1	1																																																																																																																																																																																										12
GC	-	-	-	1																																																																																																																																																																																													1
GT	-	-	-	24	8		2																																																																																																																																																																																										34
TA	-	-	-	3722	2502	1712	1538	1342	1219	1157	953	827	690	612	476	411	348	246	173	117	77	53	37	25	14	9	6	2	2	2		2																																																																																																																																																																	18274
TC	-	-	-	11	5	1	1		1																																																																																																																																																																																								19
TG	-	-	-	65	14	6	4	1	1	1	1																																																																																																																																																																																						93
AAC	-	-	32	11	4	5	3	2	3				1	1			1																																																																																																																																																																																63
AAG	-	-	18	6	5	2	1		1		1	1	1																																																																																																																																																																																				36
AAT	-	-	450	294	206	174	100	58	43	29	15	13	7	1	1	4	2																																																																																																																																																																																1397
ACA	-	-	10	3	1		1				1																																																																																																																																																																																						16
ACC	-	-		2		1																																																																																																																																																																																											3
ACT	-	-	7	3	1																																																																																																																																																																																												11
AGA	-	-		7																																																																																																																																																																																													7
AGT	-	-	5	3	4		1																																																																																																																																																																																										13
ATA	-	-	474	231	184	110	83	56	40	32	10	14	3	1	2	1	1	4			2				1																																																																																																																																																																								1249
ATC	-	-	47	25	2	4	2	2	2	1																																																																																																																																																																																							85
ATG	-	-	45	9	4	3	1	2	1																																																																																																																																																																																								65
ATT	-	-	380	244	150	110	72	47	35	21	14	9	2	3	3	2			1					2																																																																																																																																																																									1095
CAA	-	-	6	2	4	2	1	2				2																																																																																																																																																																																					19
CAC	-	-			1																																																																																																																																																																																												1
CAG	-	-	1																																																																																																																																																																																														1
CAT	-	-	19	8	2	4	1	1	1		1																																																																																																																																																																																						37
CCA	-	-	1	1	1																																																																																																																																																																																												3
CCT	-	-	2																																																																																																																																																																																														2
CGT	-	-	1																																																																																																																																																																																														1
CTA	-	-	4	16		1		1																																																																																																																																																																																									22
CTC	-	-		2	1																																																																																																																																																																																												3
CTG	-	-	1																																																																																																																																																																																														1
CTT	-	-	8	4	2	1	1	2																																																																																																																																																																																									18
GAA	-	-	34	10	6	5		1	2																																																																																																																																																																																								58
GAG	-	-	2		1																																																																																																																																																																																												3
GAT	-	-	38	18	10	4	3	2		1																																																																																																																																																																																							76
GGT	-	-	1	1																																																																																																																																																																																													2
GTA	-	-	23	7	1		2																																																																																																																																																																																										33
GTC	-	-		1																																																																																																																																																																																													1
GTT	-	-	9	4	2	4			1																																																																																																																																																																																								20
TAA	-	-	230	115	112	70	35	30	21	16	8	5	2	1	1	1	1																																																																																																																																																																																648
TAC	-	-	50	14	6		1		1						2		1																1																																																																																																																																																																76
TAG	-	-	20	7	2	2	3			1													1																																																																																																																																																																										36
TAT	-	-	473	240	176	147	94	63	36	26	13	14	5	3	5	1	2					1																																																																																																																																																																											1299
TCA	-	-	43	14	8	5	3		1	1																																																																																																																																																																																							75
TCC	-	-	3	5																																																																																																																																																																																													8
TCT	-	-	25	9	4	3			2		1																																																																																																																																																																																						44
TGA	-	-	37	7	5	2																																																																																																																																																																																											51
TGT	-	-	9	4	5	1	4	2		1						1																																																																																																																																																																																	27
TTA	-	-	347	172	118	76	59	46	23	17	15	7	5	2	4	1	1	1	2				1																																																																																																																																																																										897
TTC	-	-	48	17	4	6	2																																																																																																																																																																																										77
TTG	-	-	18	10	9	3	2	1	3	2		1				1				1	1																																																																																																																																																																												52
AAAC	-	23	1	3	4		1	1																		1																																																																																																																																																																							34
AAAG	-	8	3	4	2	1		1																	1	1																																																																																																																																																																							21
AAAT	-	457	252	154	88	34	17	15	2	2	1																																																																																																																																																																																						1022
AACA	-	6	1	1	1	1			1		2																																																																																																																																																																																						13
AAGA	-	10	3	1	1																																																																																																																																																																																												15
AAGC	-	1																																																																																																																																																																																															1
AAGG	-	1																																																																																																																																																																																															1
AAGT	-	1																																																																																																																																																																																															1
AATA	-	313	180	102	49	38	22	9	1		1						1																																																																																																																																																																																716
AATG	-	3			1	1																																																																																																																																																																																											5
AATT	-	3	4	1																																																																																																																																																																																													8
ACAA	-		1	1						1						1																																																																																																																																																																																	4
ACAT	-	32	12	5	1	2		3																													1																																																																																																																																																												56
AGAA	-	3	1		2																																																																																																																																																																																												6
AGAT	-			1																																																																																																																																																																																													1
AGTA	-	4																																																																																																																																																																																															4
ATAA	-	488	195	101	41	19	17	3	2	3								1		1																																																																																																																																																																													871
ATAC	-	71	26	30	6	5	2	1			1	1	1			1																		1		2	1												1																																																																																																																																																150
ATAG	-	1																																																																																																																																																																																															1
ATGA	-	4																																																																																																																																																																																															4
ATGC	-	1																																																																																																																																																																																															1
ATGT	-	19	11	3	1		3		1	1	1																										1																																																																																																																																																												41
ATTA	-	8	2	1																																																																																																																																																																																													11
ATTC	-	1	3	2																																																																																																																																																																																													6
ATTG	-	1																																																																																																																																																																																															1
ATTT	-	260	156	64	34	16	5	3	3	2																																																																																																																																																																																							543
CAAA	-	5	3	4	1				1																																																																																																																																																																																								14
CAAT	-	1	1	1	1	1																																																																																																																																																																																											5
CATA	-	19	3	1		1	1																																																																																																																																																																																										25
CTTA	-	10						1																																																																																																																																																																																									11
CTTT	-		3	3																																																																																																																																																																																													6
GAAA	-	5	4	5	3																																																																																																																																																																																												17
GAAG	-	1																																																																																																																																																																																															1
GAAT	-	1				1	2																																																																																																																																																																																										4
GCTA	-	1																																																																																																																																																																																															1
GGAT	-				1																																																																																																																																																																																												1
GTAT	-	26	9	4	3	1		1																																																																																																																																																																																									44
GTTT	-	4	2	1																																																																																																																																																																																													7
TAAA	-	158	74	24	15	5	1			2																																																																																																																																																																																							279
TAAG	-	2																																																																																																																																																																																															2
TAAT	-	11	1																																																																																																																																																																																														12
TACA	-	12	8	3	1		1																																																																																																																																																																																										25
TAGA	-	1																																																																																																																																																																																															1
TAGT	-	1																																																																																																																																																																																															1
TATC	-	1																																																																																																																																																																																															1
TATG	-	64	33	14	3	1	7	1																																														1																																																																																																																																											124
TATT	-	508	251	125	59	30	15	4	2		2					1																																																																																																																																																																																	997
TCAT	-	3																																																																																																																																																																																															3
TCTA	-	2																																																																																																																																																																																															2
TCTT	-	5	3	1	1																																																																																																																																																																																												10
TGAA	-									1																																																																																																																																																																																							1
TGAT	-	1	1																																																																																																																																																																																														2
TGTA	-	18	6	3	2		1	1				1				1				1			1																																																																																																																																																																										35
TGTT	-	4												1																																																																																																																																																																																			5
TTAA	-	6	4																																																																																																																																																																																														10
TTAC	-	1																																																																																																																																																																																															1
TTAG	-	1																																																																																																																																																																																															1
TTAT	-	279	140	70	34	18	8	9	2					1																																																																																																																																																																																			561
TTCA	-	1				1																																																																																																																																																																																											2
TTCC	-	1			1																																																																																																																																																																																												2
TTCT	-	8	1	2	2																																																																																																																																																																																												13
TTTA	-	317	129	79	50	12	11	6	2	1	2	1																																																																																																																																																																																					610
TTTC	-	20	11	5		2				1																																																																																																																																																																																							39
TTTG	-	18	4	3	1																																																																																																																																															1																																													27
AAAAC	34	10	2		1																																																																																																																																																																																												47
AAAAG	74	15	3		2																																																																																																																																																																																												94
AAAAT	507	193	79	19	4	1	1		2																																																																																																																																																																																								806
AAACA	10	1																																																																																																																																																																																															11
AAAGA	14	5	1	1																																																																																																																																																																																													21
AAAGC	2																																																																																																																																																																																																2
AAAGG	4																																																																																																																																																																																																4
AAATA	182	73	22	7	2			2																																																																																																																																																																																									288
AAATC	3	1																																																																																																																																																																																															4
AAATG	12	1																																																																																																																																																																																															13
AAATT	15	3	4																																																																																																																																																																																														22
AACAA	3	1		2																																																																																																																																																																																													6
AACAC	1																																																																																																																																																																																																1
AACAT	1		3																																																																																																																																																																																														4
AACCA		1																																																																																																																																																																																															1
AACCT	1																																																																																																																																																																																																1
AAGAA	19	1	2	2																																																																																																																																																																																													24
AAGAG	2																																																																																																																																																																																																2
AAGAT	1																																																																																																																																																																																																1
AAGGA	1																																																																																																																																																																																																1
AAGGG	1																																																																																																																																																																																																1
AATAA	181	55	15	6	1																																																																																																																																																																																												258
AATAC	10	4																																																																																																																																																																																															14
AATAG	2	1	1																																																																																																																																																																																														4
AATAT	107	30	6	7	2	2	2	2	3		2	1			2								1																																																																																																																																																																										167
AATGA	2		1																																																																																																																																																																																														3
AATGG	6	1																																																																																																																																																																																															7
AATTA	9	4	1																																																																																																																																																																																														14
AATTC	1																																																																																																																																																																																																1
AATTG	1	1		1																																																																																																																																																																																													3
AATTT	5																																																																																																																																																																																																5
ACAAA	5	1																																																																																																																																																																																															6
ACAAC	1																																																																																																																																																																																																1
ACAAT			1																																																																																																																																																																																														1
AGAAA	14	2	2																																																																																																																																																																																														18
AGAAC	1																																																																																																																																																																																																1
AGAAT	2																																																																																																																																																																																																2
AGGAA	3																																																																																																																																																																																																3
AGTAT	1																																																																																																																																																																																																1
ATAAA	115	25	10	3	1	1		1																																																																																																																																																																																									156
ATAAC	1																																																																																																																																																																																																1
ATAAG	1																																																																																																																																																																																																1
ATAAT	70	11	4	7	1	1	1			1	2									1	1																																																																																																																																																																												100
ATACA	1																																																																																																																																																																																																1
ATACT	2																																																																																																																																																																																																2
ATATA	409	83	20	9	5		2	1	1			1	2			2		2					1															1																																																																																																																																																											539
ATATC	3	2																																																																																																																																																																																															5
ATATG	3																																																																																																																																																																																																3
ATATT	72	21	9	3									1																																																																																																																																																																																				106
ATCAA	1																																																																																																																																																																																																1
ATCAT	2	1	1																																																																																																																																																																																														4
ATCTA		1																																																																																																																																																																																															1
ATGAA	6	1																																																																																																																																																																																															7
ATGAG	1																																																																																																																																																																																																1
ATGAT	1																																																																																																																																																																																																1
ATGTT		1																																																																																																																																																																																															1
ATTAA	3	5	1																																																																																																																																																																																														9
ATTAT	69	19	5	2	1								6								1				1			1																																																																																																																																																																					105
ATTGT		1																																																																																																																																																																																															1
ATTTA	11	4		1																																																																																																																																																																																													16
ATTTC	17	2	1	1																																																																																																																																																																																													21
ATTTG	4	1		1																																																																																																																																																																																													6
ATTTT	140	40	25	8	1						1																																																																																																																																																																																						215
CAAAA	3	1																																																																																																																																																																																															4
CAAAT		1																																																																																																																																																																																															1
CAACA				2																																																																																																																																																																																													2
CAATA	1		1																																																																																																																																																																																														2
CACAT	1																																																																																																																																																																																																1
CATAA	5																																																																																																																																																																																																5
CATAT	1	1																																																																																																																																																																																															2
CATTA	1																																																																																																																																																																																																1
CATTC	4																																																																																																																																																																																																4
CATTT	3	1																																																																																																																																																																																															4
CCACA	1																																																																																																																																																																																																1
CCTTC	1																																																																																																																																																																																																1
CTTAT	2																																																																																																																																																																																																2
CTTTC	1																																																																																																																																																																																																1
CTTTT	14	6														1																																																																																																																																																																																	21
GAAAA	29	10	1	2																																																																																																																																																																																													42
GAAAG	3																																																																																																																																																																																																3
GAAAT	5																																																																																																																																																																																																5
GAATG	12	2	2																																																																																																																																																																																														16
GAATT		1																																																																																																																																																																																															1
GATAT	2	1																																																																																																																																																																																															3
GCCAA	1																																																																																																																																																																																																1
GGAAA	1		1																																																																																																																																																																																														2
GGAAT		3																																																																																																																																																																																															3
GTATT	1																																																																																																																																																																																																1
GTGGT	1																																																																																																																																																																																																1
GTGTT	1																																																																																																																																																																																																1
GTTTG	1																																																																																																																																																																																																1
GTTTT	2		2																																																																																																																																																																																														4
TAAAA	94	32	11	3			1																																																																																																																																																																																										141
TAAAG	1																																																																																																																																																																																																1
TAAAT	17	3	1																																																																																																																																																																																														21
TAAGA	1																																																																																																																																																																																																1
TAATA	43	9	4	5			2	3																																																																																																																																																																																									66
TAATG	2																																																																																																																																																																																																2
TAATT	9																																																																																																																																																																																																9
TACAA				1																																																																																																																																																																																													1
TATAA	65	12	6		1		1																																																																																																																																																																																										85
TATAC	3																																																																																																																																																																																																3
TATAT	416	55	19	7	3	1	2	2	1	1		1					1							1																																																																																																																																																																									510
TATCA	2																																																																																																																																																																																																2
TATCT	1			1																																																																																																																																																																																													2
TATGA		1																																																																																																																																																																																															1
TATGT	5																																																																																																																																																																																																5
TATTA	80	30	15	7	3	6	1	1		1							1				2																																																																																																																																																																												147
TATTC	4																																																																																																																																																																																																4
TATTG	1	3	3	1	1																																																																																																																																																																																												9
TATTT	179	37	26	11	3	2	1	2		1																																																																																																																																																																																							262
TCAAA	1																																																																																																																																																																																																1
TCAAT				1																																																																																																																																																																																													1
TCCAT	1																																																																																																																																																																																																1
TCTGT		1																																																																																																																																																																																															1
TCTTC	1																																																																																																																																																																																																1
TCTTT	9	1																																																																																																																																																																																															10
TGAAA		2				1																																																																																																																																																																																											3
TGAAT		2		1																																																																																																																																																																																													3
TGATA			2																																																																																																																																																																																														2
TGATT	2																																																																																																																																																																																																2
TGGAA	3			1																																																																																																																																																																																													4
TGTAT	1																																																																																																																																																																																																1
TGTTA	1																																																																																																																																																																																																1
TGTTC	1																																																																																																																																																																																																1
TGTTT	10	2																																																																																																																																																																																															12
TTAAA	6	1	1																																																																																																																																																																																														8
TTAAT	12																																																																																																																																																																																																12
TTATA	89	15	7	2		1																		1																																																																																																																																																																									115
TTATC	1																																																																																																																																																																																																1
TTATG	1																																																																																																																																																																																																1
TTATT	234	86	32	7	3	1							1																																																																																																																																																																																				364
TTCAT	2																																																																																																																																																																																																2
TTCCT	1																																																																																																																																																																																																1
TTCTT	30	2	2																																																																																																																																																																																														34
TTGAT	1																																																																																																																																																																																																1
TTGTA	2	1																																																																																																																																																																																															3
TTGTC	1																																																																																																																																																																																																1
TTGTT	9	3	1	1																																																																																																																																																																																													14
TTTAA	7	2	1																																																																																																																																																																																														10
TTTAT	215	70	28	9			1		1																																																																																																																																																																																								324
TTTCA	5	2	1																																																																																																																																																																																														8
TTTCC	3																																																																																																																																																																																																3
TTTCT	23	6	1																																																																																																																																																																																														30
TTTGA	1																																																																																																																																																																																																1
TTTGC	3																																																																																																																																																																																																3
TTTGT	13	4	2	1							1																																																																																																																																																																																						21
TTTTA	281	116	38	12	2			1				1																																																																																																																																																																																					451
TTTTC	90	19	3	1																																																																																																																																																																																													113
TTTTG	20	6	2	1																																																																																																																																																																																													29
AAAAAC	3	1		1																																																																																																																																																																																													5
AAAAAG	47	11	2		1																																																																																																																																																																																												61
AAAAAT	123	23	6																																																																																																																																																																																														152
AAAACA	6	1																																																																																																																																																																																															7
AAAAGA	8	5	2										1																																																																																																																																																																																				16
AAAAGG	3	1																																																																																																																																																																																															4
AAAAGT	1																																																																																																																																																																																																1
AAAATA	44	6	2																																																																																																																																																																																														52
AAAATC	1																																																																																																																																																																																																1
AAAATG	5	3	2																																																																																																																																																																																														10
AAAATT	7		1																																																																																																																																																																																														8
AAACAA		1																																																																																																																																																																																															1
AAACAC	1																																																																																																																																																																																																1
AAACAT	2	2		1																																																																																																																																																																																													5
AAACCT	1																																																																																																																																																																																																1
AAAGAA	18	3	1																																																																																																																																																																																														22
AAAGAG	4																																																																																																																																																																																																4
AAAGAT	4																																																																																																																																																																																																4
AAAGGA		6	2																																																																																																																																																																																														8
AAAGTA		1																																																																																																																																																																																															1
AAATAA	28	3																																																																																																																																																																																															31
AAATAC	1	1																																																																																																																																																																																															2
AAATAG	1	1	1																																																																																																																																																																																														3
AAATAT	54	15	6	2		1																																																																																																																																																																																											78
AAATGA	1	1																																																																																																																																																																																															2
AAATGC	1																																																																																																																																																																																																1
AAATGG		1																																																																																																																																																																																															1
AAATGT	3																																																																																																																																																																																																3
AAATTA	6		1																																																																																																																																																																																														7
AAATTT	2																																																																																																																																																																																																2
AACAAA	1	3																																																																																																																																																																																															4
AACAAG		1																																																																																																																																																																																															1
AACAAT		1																																																																																																																																																																																															1
AACACA	1																																																																																																																																																																																																1
AACATA	1	1																																																																																																																																																																																															2
AACCAT	1																																																																																																																																																																																																1
AACCCT	3																																																																																																																																																																																																3
AACCTA	2																																																																																																																																																																																																2
AACTAT	1																																																																																																																																																																																																1
AAGAAA	13	7																																																																																																																																																																																															20
AAGAAT	1																																																																																																																																																																																																1
AAGAGG	1																																																																																																																																																																																																1
AAGCAC	1																																																																																																																																																																																																1
AAGGAA	3												1																																																																																																																																																																																				4
AAGGAG	2	1																																																																																																																																																																																															3
AAGGAT	3																																																																																																																																																																																																3
AATAAA	20	5	1																																																																																																																																																																																														26
AATAAC	10		3																																																																																																																																																																																														13
AATAAG	3																																																																																																																																																																																																3
AATAGT	4	1																																																																																																																																																																																															5
AATATA	32	6																																																																																																																																																																																															38
AATATC	1																																																																																																																																																																																																1
AATATT	1																																																																																																																																																																																																1
AATCAA	1																																																																																																																																																																																																1
AATCAT				1																																																																																																																																																																																													1
AATGAA	1	1																																																																																																																																																																																															2
AATGAT	4																																																																																																																																																																																																4
AATGGA	3		1																																																																																																																																																																																														4
AATGGT	2	1																																																																																																																																																																																															3
AATGTA	1																																																																																																																																																																																																1
AATGTC	1																																																																																																																																																																																																1
AATTAA	2																																																																																																																																																																																																2
AATTAC	1	1																																																																																																																																																																																															2
AATTAT	6	1																																																																																																																																																																																															7
AATTTA	1																																																																																																																																																																																																1
AATTTT	1																																																																																																																																																																																																1
ACAAAA	1																																																																																																																																																																																																1
ACAAAC	1																																																																																																																																																																																																1
ACAAAG	1																																																																																																																																																																																																1
ACAAAT	2	3																																																																																																																																																																																															5
ACAAGA	2																																																																																																																																																																																																2
ACAATA	2		1																																																																																																																																																																																														3
ACAATT		1																																																																																																																																																																																															1
ACACAT	1																																																																																																																																																																																																1
ACAGAT	1																																																																																																																																																																																																1
ACATAA	2	1																																																																																																																																																																																															3
ACATAT	6	1		2																																																																																																																																																																																													9
ACATGT	1																																																																																																																																																																																																1
ACATTA	2																																																																																																																																																																																																2
ACATTT	1																																																																																																																																																																																																1
ACCAAG	1																																																																																																																																																																																																1
ACTATT	2																																																																																																																																																																																																2
AGAAAA	10	3	2																																																																																																																																																																																														15
AGAAAC	2																																																																																																																																																																																																2
AGAAGG	1																																																																																																																																																																																																1
AGAATA	2																																																																																																																																																																																																2
AGAATT	1																																																																																																																																																																																																1
AGAGAA	3			3																																																																																																																																																																																													6
AGATAA		1																																																																																																																																																																																															1
AGATAT	2																																																																																																																																																																																																2
AGGAAA	3	1																																																																																																																																																																																															4
AGGAAG		1																																																																																																																																																																																															1
AGGAGA	1																																																																																																																																																																																																1
AGGAGC	1																																																																																																																																																																																																1
AGGTAA	1																																																																																																																																																																																																1
AGGTTT	1																																																																																																																																																																																																1
AGTAAT	2																																																																																																																																																																																																2
AGTATT	1																																																																																																																																																																																																1
ATAAAA	26	4																																																																																																																																																																																															30
ATAAAC	9	5		1																																																																																																																																																																																													15
ATAAAG	1																																																																																																																																																																																																1
ATAAAT	107	20	3		1																																																																																																																																																																																												131
ATAACA		1																																																																																																																																																																																															1
ATAAGA	3																																																																																																																																																																																																3
ATAATG	5	2	1																																																																																																																																																																																														8
ATAATT	8																																																																																																																																																																																																8
ATACAC	3	1																																																																																																																																																																																															4
ATACAT	3																																																																																																																																																																																																3
ATAGAT	1																																																																																																																																																																																																1
ATAGGA	1																																																																																																																																																																																																1
ATAGTA	2																																																																																																																																																																																																2
ATATAA	86	8	2	1	1																																																																																																																																																																																												98
ATATAC	12	4																																																																																																																																																																																															16
ATATAG	4																																																																																																																																																																																																4
ATATGC	2																																																																																																																																																																																																2
ATATGT	6		1		1																																																																																																																																																																																												8
ATATTA		1																																																																																																																																																																																															1
ATATTC	1																																																																																																																																																																																																1
ATATTT	25	5	1																																																																																																																																																																																														31
ATCATG	1																																																																																																																																																																																																1
ATCATT	4	3																																																																																																																																																																																															7
ATCTTT	2																																																																																																																																																																																																2
ATGAAA	1																																																																																																																																																																																																1
ATGAAC	2																																																																																																																																																																																																2
ATGAAG	2																																																																																																																																																																																																2
ATGAAT	1	1																																																																																																																																																																																															2
ATGATA	10	4	1	1																																																																																																																																																																																													16
ATGATC	1																																																																																																																																																																																																1
ATGATT	1	1																																																																																																																																																																																															2
ATGCAA		1																																																																																																																																																																																															1
ATGTAA	3		1																																																																																																																																																																																														4
ATGTAT	1																																																																																																																																																																																																1
ATGTCC	1																																																																																																																																																																																																1
ATGTGT		1																																																																																																																																																																																															1
ATGTTG	1																																																																																																																																																																																																1
ATGTTT			1																																																																																																																																																																																														1
ATTAAA	2																																																																																																																																																																																																2
ATTAAC	2																																																																																																																																																																																																2
ATTAAT	3																																																																																																																																																																																																3
ATTACT	1		2																																																																																																																																																																																														3
ATTAGC			1																																																																																																																																																																																														1
ATTATA	6	3																																																																																																																																																																																															9
ATTATC	12																																																																																																																																																																																																12
ATTGTA	1																																																																																																																																																																																																1
ATTGTT	1																																																																																																																																																																																																1
ATTTAA	1																																																																																																																																																																																																1
ATTTAC	1	1	1																																																																																																																																																																																														3
ATTTAT	25	8	2																																																																																																																																																																																														35
ATTTGC	1																																																																																																																																																																																																1
ATTTGT				1																																																																																																																																																																																													1
ATTTTA	3	1																																																																																																																																																																																															4
ATTTTC	6	4	2	1																																																																																																																																																																																													13
ATTTTG	1																																																																																																																																																																																																1
ATTTTT	28	3				1																																																																																																																																																																																											32
CAAAAA	3						1																																																																																																																																																																																										4
CAACAC	8																																																																																																																																																																																																8
CAACAG	1																																																																																																																																																																																																1
CAAGAA	1																																																																																																																																																																																																1
CAATAA	1				1																																																																																																																																																																																												2
CAATAC	1																																																																																																																																																																																																1
CAATGA		1																																																																																																																																																																																															1
CACATA			1																																																																																																																																																																																														1
CATAAA	3	1																																																																																																																																																																																															4
CATATA	1																																																																																																																																																																																																1
CATCAA	2																																																																																																																																																																																																2
CATCCC	1																																																																																																																																																																																																1
CATCGT					1																																																																																																																																																																																												1
CATGAA	1																																																																																																																																																																																																1
CATTAA	1	1																																																																																																																																																																																															2
CATTAT	2		1																																																																																																																																																																																														3
CATTTA	1																																																																																																																																																																																																1
CATTTC	1	1						1																																																																																																																																																																																									3
CATTTG	1																																																																																																																																																																																																1
CATTTT	2																																																																																																																																																																																																2
CCTAAA	40	4																																																																																																																																																																																															44
CCTCTT	1																																																																																																																																																																																																1
CCTGAA	1																																																																																																																																																																																																1
CCTTCC	1																																																																																																																																																																																																1
CCTTTA	1																																																																																																																																																																																																1
CTATTA		1																																																																																																																																																																																															1
CTCTTT		1																																																																																																																																																																																															1
CTGGTA	1																																																																																																																																																																																																1
CTTACT	1																																																																																																																																																																																																1
CTTCAC	2																																																																																																																																																																																																2
CTTTTA	2																																																																																																																																																																																																2
CTTTTC		2	1																																																																																																																																																																																														3
CTTTTT	8	1																																																																																																																																																																																															9
GAAAAA	8	7	1																																																																																																																																																																																														16
GAAAAC	1																																																																																																																																																																																																1
GAAAAG	6	2											1																																																																																																																																																																																				9
GAAAAT	6																																																																																																																																																																																																6
GAAAGA	3																																																																																																																																																																																																3
GAAATA						1																																																																																																																																																																																											1
GAAATT	1																																																																																																																																																																																																1
GAACAT	1																																																																																																																																																																																																1
GAAGAC	2																																																																																																																																																																																																2
GAAGAG	2																																																																																																																																																																																																2
GAAGAT	2	1																																																																																																																																																																																															3
GAAGGA	1																																																																																																																																																																																																1
GAATAA	2																																																																																																																																																																																																2
GAATAT	1																																																																																																																																																																																																1
GACTCA			1																																																																																																																																																																																														1
GAGAAA	2	2																																																																																																																																																																																															4
GAGGAT	1																																																																																																																																																																																																1
GATAAA	3																																																																																																																																																																																																3
GATAAC	1				1																																																																																																																																																																																												2
GATAAT	2																																																																																																																																																																																																2
GATAGA	2																																																																																																																																																																																																2
GATATA	1																																																																																																																																																																																																1
GATGAA	3		1		1																																																																																																																																																																																												5
GATGAC	1																																																																																																																																																																																																1
GATTCA	1																																																																																																																																																																																																1
GCTTGA	1																																																																																																																																																																																																1
GGAAAA	1																																																																																																																																																																																																1
GGAAAG	1																																																																																																																																																																																																1
GGTGAA	1																																																																																																																																																																																																1
GGTTTA	25	1																																																																																																																																																																																															26
GTAAAA	1																																																																																																																																																																																																1
GTAAAT		1																																																																																																																																																																																															1
GTAATA	2	2	1																																																																																																																																																																																														5
GTAGGA	3																																																																																																																																																																																																3
GTATAT	1	1																																																																																																																																																																																															2
GTATTA	1																																																																																																																																																																																																1
GTGAAG	2																																																																																																																																																																																																2
GTGAGG		1																																																																																																																																																																																															1
GTGATG	2																																																																																																																																																																																																2
GTGTTA	1																																																																																																																																																																																																1
GTTAAA	1																																																																																																																																																																																																1
GTTCTT	1																																																																																																																																																																																																1
GTTTAT			2		1																																																																																																																																																																																												3
TAAAAA	15	5																																																																																																																																																																																															20
TAAAAT	1	1																																																																																																																																																																																															2
TAAACA	1																																																																																																																																																																																																1
TAAAGG	1																																																																																																																																																																																																1
TAAATA	22	2																																																																																																																																																																																															24
TAAATG	2																																																																																																																																																																																																2
TAACAA	1																																																																																																																																																																																																1
TAATAG	10	1																																																																																																																																																																																															11
TAATAT	2																																																																																																																																																																																																2
TAATGA	3	1																																																																																																																																																																																															4
TAATGG	1																																																																																																																																																																																																1
TAATTA	2	2																																																																																																																																																																																															4
TAATTT	1																																																																																																																																																																																																1
TACATA	3		1																																																																																																																																																																																														4
TACATT		1																																																																																																																																																																																															1
TACTAT	1	3																																																																																																																																																																																															4
TACTTC	1																																																																																																																																																																																																1
TAGAAC		1																																																																																																																																																																																															1
TAGATA	1																																																																																																																																																																																																1
TAGTAA	1	1																																																																																																																																																																																															2
TATAAA	24	5																																																																																																																																																																																															29
TATAAT	4	2																																																																																																																																																																																															6
TATACA	2																																																																																																																																																																																																2
TATATC	2			1																																																																																																																																																																																													3
TATATG	6	4																																																																																																																																																																																															10
TATATT	79	23	2	1																																																																																																																																																																																													105
TATCAT	3		1																																																																																																																																																																																														4
TATCTT	2	1																																																																																																																																																																																															3
TATGTA	4	1																																																																																																																																																																																															5
TATGTG		1		1																																																																																																																																																																																													2
TATGTT	2																																																																																																																																																																																																2
TATTAA	2	1																																																																																																																																																																																															3
TATTAC	5	1																																																																																																																																																																																															6
TATTGT	3	1																																																																																																																																																																																															4
TATTTA	81	22	2																																																																																																																																																																																														105
TATTTC		1																																																																																																																																																																																															1
TATTTG	1	2																																																																																																																																																																																															3
TATTTT	29	10	2		1																																																																																																																																																																																												42
TCAAAA	1																																																																																																																																																																																																1
TCAAGA	1																																																																																																																																																																																																1
TCAAGC	1																																																																																																																																																																																																1
TCACAA		1																																																																																																																																																																																															1
TCACAC	1																																																																																																																																																																																																1
TCACCT	1																																																																																																																																																																																																1
TCATAA		1																																																																																																																																																																																															1
TCATCG	2																																																																																																																																																																																																2
TCATCT	1																																																																																																																																																																																																1
TCATTA			1																																																																																																																																																																																														1
TCATTT	2	1																																																																																																																																																																																															3
TCCATT	1																																																																																																																																																																																																1
TCCTCT	2																																																																																																																																																																																																2
TCGTCA	1			1																																																																																																																																																																																													2
TCGTGT		1																																																																																																																																																																																															1
TCTATA	2																																																																																																																																																																																																2
TCTCTA	2																																																																																																																																																																																																2
TCTTCA	1	2			2																																																																																																																																																																																												5
TCTTCC	1																																																																																																																																																																																																1
TCTTCG	1																																																																																																																																																																																																1
TCTTGA	1																																																																																																																																																																																																1
TCTTTA	4	1																																																																																																																																																																																															5
TCTTTC	1	1																																																																																																																																																																																															2
TCTTTG					1																																																																																																																																																																																												1
TCTTTT	8	2	1																																																																																																																																																																																														11
TGAAAA	1																																																																																																																																																																																																1
TGACGT	1																																																																																																																																																																																																1
TGATAA		2																																																																																																																																																																																															2
TGATGG	1																																																																																																																																																																																																1
TGATGT		1																																																																																																																																																																																															1
TGATTA	2																																																																																																																																																																																																2
TGATTT	1																																																																																																																																																																																																1
TGCAAC	1																																																																																																																																																																																																1
TGCTCA		1																																																																																																																																																																																															1
TGCTCT				1																																																																																																																																																																																													1
TGGATG	1																																																																																																																																																																																																1
TGTAAA		1																																																																																																																																																																																															1
TGTATA	3																																																																																																																																																																																																3
TGTATT	1																																																																																																																																																																																																1
TGTGTA		2																																																																																																																																																																																															2
TGTGTT	1																																																																																																																																																																																																1
TGTTAT	1																																																																																																																																																																																																1
TGTTCA	1	1																																																																																																																																																																																															2
TGTTCT	1																																																																																																																																																																																																1
TGTTGA	4																																																																																																																																																																																																4
TGTTTA	1		1																																																																																																																																																																																														2
TTAAAT	1	1																																																																																																																																																																																															2
TTAATA	2																																																																																																																																																																																																2
TTAATG	2																																																																																																																																																																																																2
TTAATT	1																																																																																																																																																																																																1
TTACTC	1																																																																																																																																																																																																1
TTAGGG	3																																																																																																																																																																																																3
TTAGGT	1																																																																																																																																																																																																1
TTATAG	1																																																																																																																																																																																																1
TTATAT	22	4	3	1							1																																																																																																																																																																																						31
TTATCA	2																																																																																																																																																																																																2
TTATCC	1	1																																																																																																																																																																																															2
TTATCT	2																																																																																																																																																																																																2
TTATGA	1																																																																																																																																																																																																1
TTATTG	2	2	2																																																																																																																																																																																														6
TTATTT	28	1																																																																																																																																																																																															29
TTCAAT		1																																																																																																																																																																																															1
TTCATA			1																																																																																																																																																																																														1
TTCATC	2																																																																																																																																																																																																2
TTCTCC		2																																																																																																																																																																																															2
TTCTCT			1																																																																																																																																																																																														1
TTCTGA			1																																																																																																																																																																																														1
TTCTTA	3																																																																																																																																																																																																3
TTCTTT	10	2	1																																																																																																																																																																																														13
TTGACC				1																																																																																																																																																																																													1
TTGATG	1																																																																																																																																																																																																1
TTGCTC		1																																																																																																																																																																																															1
TTGTCC		1																																																																																																																																																																																															1
TTGTGT	1																																																																																																																																																																																																1
TTGTTA	2																																																																																																																																																																																																2
TTGTTC	1	1																																																																																																																																																																																															2
TTGTTT						1																																																																																																																																																																																											1
TTTAAT	3	1																																																																																																																																																																																															4
TTTACA	1																																																																																																																																																																																																1
TTTAGG	10																																																																																																																																																																																																10
TTTATA	58	3	1																																																																																																																																																																																														62
TTTATC		1																																																																																																																																																																																															1
TTTATG	12	2		1																																																																																																																																																																																													15
TTTATT	37	9		1																																																																																																																																																																																													47
TTTCAT	2																																																																																																																																																																																																2
TTTCCC		1																																																																																																																																																																																															1
TTTCCT	2																																																																																																																																																																																																2
TTTCTA	1																																																																																																																																																																																																1
TTTCTG	2																																																																																																																																																																																																2
TTTCTT	14	3	3																																																																																																																																																																																														20
TTTGAT	1																																																																																																																																																																																																1
TTTGTA	2																																																																																																																																																																																																2
TTTGTC	2																																																																																																																																																																																																2
TTTGTG		1		1																																																																																																																																																																																													2
TTTGTT	2	1																																																																																																																																																																																															3
TTTTAA	6	3																																																																																																																																																																																															9
TTTTAC	2																																																																																																																																																																																																2
TTTTAT	33	5	1																																																																																																																																																																																														39
TTTTCA	3	2																																																																																																																																																																																															5
TTTTCC	4	1																																																																																																																																																																																															5
TTTTCT	19	4	2							1																																																																																																																																																																																							26
TTTTGT	8	2					1																																																																																																																																																																																										11
TTTTTA	55	17	3		1	1																																																																																																																																																																																											77
TTTTTC	38	12	4					1																																																																																																																																																																																									55
TTTTTG	12	4		1			1																																																																																																																																																																																										18

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	169	170	171	172	173	174	175	176	177	178	179	180	181	182	183	184	185	186	187	188	189	190	191	192	193	194	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1609	1469	1303	1241	1112	1009	938	812	737	557	421	367	277	270	224	223	187	154	116	58	36	30	20	18	17	10	7	7	4	5	9	4	5	4	4	4	1		1	3			1			1	3	1		1	2				1		1			1			2			1	1						1			1						1							3								1										1				1							1								1																		1																															1	13302
AC/GT	-	-	-	168	42	24	9	4	3	2	1																																																																																																																																																																																						253
AG/CT	-	-	-	29	14	3	6	1	1	1																																																																																																																																																																																							55
AT/AT	-	-	-	8697	5595	4278	3959	3545	3338	3203	2756	2444	2157	1734	1514	1236	1009	782	594	449	281	211	145	97	50	33	22	14	9	3	4	4	1	1	2																																																																																																																																																														48167
CG/CG	-	-	-	1																																																																																																																																																																																													1
AAC/GTT	-	-	84	34	25	15	11	7	7	3	1	3	1	1		2	1			1	1																																																																																																																																																																												197
AAG/CTT	-	-	133	53	21	17	4	3	5		2	1	1																																																																																																																																																																																				240
AAT/ATT	-	-	2354	1296	946	687	443	300	198	141	75	62	24	11	16	10	7	5	3		2	1	1	2	1																																																																																																																																																																								6585
ACC/GGT	-	-	2	4	2	1																																																																																																																																																																																											9
ACG/CGT	-	-	1	1																																																																																																																																																																																													2
ACT/AGT	-	-	109	50	14	3	7	1	1	1					2		1						1										1																																																																																																																																																																191
AGC/CTG	-	-	2																																																																																																																																																																																														2
AGG/CCT	-	-	7	7	2																																																																																																																																																																																												16
ATC/ATG	-	-	229	81	31	22	10	7	5	3	1																																																																																																																																																																																						389
AAAC/GTTT	-	60	12	13	7	1	1	1	2	1	2			1		1										1																																																																																																																										1																																													104
AAAG/CTTT	-	59	29	21	11	3		1		1															1	1																																																																																																																																																																							127
AAAT/ATTT	-	2780	1377	719	370	172	96	49	14	10	6	1		1		1	1	1		1																																																																																																																																																																													5599
AACT/AGTT	-	2																																																																																																																																																																																															2
AAGC/CTTG	-	1																																																																																																																																																																																															1
AAGG/CCTT	-	3			1																																																																																																																																																																																												4
AAGT/ACTT	-	18						1																																																																																																																																																																																									19
AATC/ATTG	-	3	2	1	1	1																																																																																																																																																																																											8
AATG/ATTC	-	13	3	2	1	3	2			1																																																																																																																																																																																							25
AATT/AATT	-	28	11	2																																																																																																																																																																																													41
ACAT/ATGT	-	261	108	63	17	10	15	7	1	1	2	2	1			2				1			1											1		2	3												1					1																																																																																																																																											500
AGAT/ATCT	-	5		1																																																																																																																																																																																													6
AGCT/AGCT	-	1																																																																																																																																																																																															1
ATCC/ATGG	-				1																																																																																																																																																																																												1
ATGC/ATGC	-	1																																																																																																																																																																																															1
AAAAC/GTTTT	109	29	9	5	1						1																																																																																																																																																																																						154
AAAAG/CTTTT	316	67	15	6	2											1																																																																																																																																																																																	407
AAAAT/ATTTT	2128	727	286	85	17	5	4	6	3	1	1	1	1																																																																																																																																																																																				3265
AAACC/GGTTT	1	1																																																																																																																																																																																															2
AAAGC/CTTTG	5																																																																																																																																																																																																5
AAAGG/CCTTT	17		1																																																																																																																																																																																														18
AAAGT/ACTTT	1																																																																																																																																																																																																1
AAATC/ATTTG	13	3		1																																																																																																																																																																																													17
AAATG/ATTTC	52	9	3	1		1																																																																																																																																																																																											66
AAATT/AATTT	94	22	9	1																																																																																																																																																																																													126
AACAC/GTGTT	3			2																																																																																																																																																																																													5
AACAG/CTGTT	2	1																																																																																																																																																																																															3
AACAT/ATGTT	14	1	3																																																																																																																																																																																														18
AACCT/AGGTT	1																																																																																																																																																																																																1
AAGAC/CTTGT	1																																																																																																																																																																																																1
AAGAG/CTCTT	3																																																																																																																																																																																																3
AAGAT/ATCTT	7			1																																																																																																																																																																																													8
AAGCC/CTTGG	1																																																																																																																																																																																																1
AAGGG/CCCTT	2																																																																																																																																																																																																2
AATAC/ATTGT	17	9	5	2	1																																																																																																																																																																																												34
AATAG/ATTCT	8	1	1																																																																																																																																																																																														10
AATAT/ATATT	1420	285	95	49	16	11	11	9	5	3	4	3	9		2	2	2	2		1	4		2	2	1			1										1																																																																																																																																																											1940
AATCT/AGATT		1																																																																																																																																																																																															1
AATGG/ATTCC	26	6	2	1																																																																																																																																																																																													35
AATGT/ACATT	3																																																																																																																																																																																																3
AATTC/AATTG	2	4		3																																																																																																																																																																																													9
ACACC/GGTGT	2																																																																																																																																																																																																2
ACATC/ATGTG	1																																																																																																																																																																																																1
ACTAT/AGTAT	6																																																																																																																																																																																																6
AGATG/ATCTC	1																																																																																																																																																																																																1
ATATC/ATATG	14	6	3																																																																																																																																																																																														23
AAAAAC/GTTTTT	36	13		2		1	3																																																																																																																																																																																										55
AAAAAG/CTTTTT	201	60	19		1			1		1			1																																																																																																																																																																																				284
AAAAAT/ATTTTT	466	91	15	1	2	2																																																																																																																																																																																											577
AAAACG/CGTTTT	1																																																																																																																																																																																																1
AAAAGG/CCTTTT	22	13	3										2																																																																																																																																																																																				40
AAAAGT/ACTTTT	6	1																																																																																																																																																																																															7
AAAATC/ATTTTG	6																																																																																																																																																																																																6
AAAATG/ATTTTC	30	12	4	1																																																																																																																																																																																													47
AAAATT/AATTTT	33	6	2																																																																																																																																																																																														41
AAACAC/GTGTTT	5	1		1																																																																																																																																																																																													7
AAACAG/CTGTTT	4																																																																																																																																																																																																4
AAACAT/ATGTTT	33	12	4	3	1																																																																																																																																																																																												53
AAACCT/AGGTTT	80	5																																																																																																																																																																																															85
AAAGAC/CTTTGT	3				1																																																																																																																																																																																												4
AAAGAG/CTCTTT	13	4	1	3																																																																																																																																																																																													21
AAAGAT/ATCTTT	18	4																																																																																																																																																																																															22
AAAGGG/CCCTTT	1	1																																																																																																																																																																																															2
AAAGGT/ACCTTT	3																																																																																																																																																																																																3
AAAGTT/AACTTT	1																																																																																																																																																																																																1
AAATAC/ATTTGT	7	6		1																																																																																																																																																																																													14
AAATAG/ATTTCT	2	2	1			1																																																																																																																																																																																											6
AAATAT/ATATTT	615	121	22	5	2	1					1																																																																																																																																																																																						767
AAATGC/ATTTGC	3	1																																																																																																																																																																																															4
AAATGG/ATTTCC	5	2	1					1																																																																																																																																																																																									9
AAATGT/ACATTT	13	4	2																																																																																																																																																																																														19
AAATTG/AATTTC	1	1																																																																																																																																																																																															2
AAATTT/AAATTT	5	1																																																																																																																																																																																															6
AACAAG/CTTGTT	6	2																																																																																																																																																																																															8
AACAAT/ATTGTT	23	5	6		1																																																																																																																																																																																												35
AACACC/GGTGTT	8																																																																																																																																																																																																8
AACACG/CGTGTT		1																																																																																																																																																																																															1
AACACT/AGTGTT	1																																																																																																																																																																																																1
AACAGC/CTGTTG	1																																																																																																																																																																																																1
AACATC/ATGTTG	8	1																																																																																																																																																																																															9
AACATG/ATGTTC	5	1																																																																																																																																																																																															6
AACATT/AATGTT	7	1																																																																																																																																																																																															8
AACCAT/ATGGTT	1																																																																																																																																																																																																1
AACCCT/AGGGTT	6																																																																																																																																																																																																6
AACCTG/AGGTTC	1																																																																																																																																																																																																1
AACGAT/ATCGTT	1				1																																																																																																																																																																																												2
AACGTC/ACGTTG	1																																																																																																																																																																																																1
AACTAG/AGTTCT		1																																																																																																																																																																																															1
AACTAT/AGTTAT	2																																																																																																																																																																																																2
AACTGC/AGTTGC	1																																																																																																																																																																																																1
AAGAAT/ATTCTT	14																																																																																																																																																																																																14
AAGACC/CTTGGT	1																																																																																																																																																																																																1
AAGACG/CGTCTT	3																																																																																																																																																																																																3
AAGAGC/CTCTTG		1		1																																																																																																																																																																																													2
AAGAGG/CCTCTT	7	1																																																																																																																																																																																															8
AAGAGT/ACTCTT	2																																																																																																																																																																																																2
AAGATC/ATCTTG	2																																																																																																																																																																																																2
AAGATG/ATCTTC	11	3	1		3																																																																																																																																																																																												18
AAGCAC/CTTGTG	1																																																																																																																																																																																																1
AAGCTC/AGCTTG	2																																																																																																																																																																																																2
AAGGAC/CCTTGT		1																																																																																																																																																																																															1
AAGGAG/CCTTCT	5	3																																																																																																																																																																																															8
AAGGAT/ATCCTT	4	1																																																																																																																																																																																															5
AAGGGG/CCCCTT	1																																																																																																																																																																																																1
AAGGTC/ACCTTG				1																																																																																																																																																																																													1
AAGGTG/ACCTTC	6																																																																																																																																																																																																6
AAGTAG/ACTTCT	1																																																																																																																																																																																																1
AATACC/ATTGGT	1																																																																																																																																																																																																1
AATACT/AGTATT	2																																																																																																																																																																																																2
AATAGG/ATTCCT	1																																																																																																																																																																																																1
AATAGT/ACTATT	30	10	3																																																																																																																																																																																														43
AATATC/ATATTG	1																																																																																																																																																																																																1
AATATG/ATATTC	3	1	1																																																																																																																																																																																														5
AATATT/AATATT	10	2																																																																																																																																																																																															12
AATCAC/ATTGTG		1																																																																																																																																																																																															1
AATCAG/ATTCTG			1																																																																																																																																																																																														1
AATCAT/ATGATT	4	2		1																																																																																																																																																																																													7
AATCTG/AGATTC	1																																																																																																																																																																																																1
AATGAC/ATTGTC		1																																																																																																																																																																																															1
AATGAT/ATCATT	47	12	5	1																																																																																																																																																																																													65
AATGCT/AGCATT			1																																																																																																																																																																																														1
AATGGT/ACCATT	3	1																																																																																																																																																																																															4
AATGTC/ACATTG	1																																																																																																																																																																																																1
AATTAC/AATTGT	2	2																																																																																																																																																																																															4
AATTAG/AATTCT	1																																																																																																																																																																																																1
AATTAT/AATTAT	26	8																																																																																																																																																																																															34
ACACAT/ATGTGT	4	5	1	1																																																																																																																																																																																													11
ACACTC/AGTGTG	1																																																																																																																																																																																																1
ACAGAT/ATCTGT	1																																																																																																																																																																																																1
ACATAT/ATATGT	48	11	2	2	1																																																																																																																																																																																												64
ACATCC/ATGTGG	1																																																																																																																																																																																																1
ACATGG/ATGTCC	1																																																																																																																																																																																																1
ACATGT/ACATGT	1																																																																																																																																																																																																1
ACCAGT/ACTGGT	1																																																																																																																																																																																																1
ACCATC/ATGGTG	3																																																																																																																																																																																																3
ACCCTC/AGGGTG		1																																																																																																																																																																																															1
ACGATG/ATCGTC	4			1	1																																																																																																																																																																																												6
ACTCAG/AGTCTG			1																																																																																																																																																																																														1
ACTCCT/AGGAGT	3																																																																																																																																																																																																3
AGAGAT/ATCTCT	4																																																																																																																																																																																																4
AGATAT/ATATCT	13			1																																																																																																																																																																																													14
AGCAGG/CCTGCT	1																																																																																																																																																																																																1
AGCATG/ATGCTC		1																																																																																																																																																																																															1
AGGATG/ATCCTC	1																																																																																																																																																																																																1
ATATGC/ATATGC	2																																																																																																																																																																																																2
ATCATG/ATCATG	2																																																																																																																																																																																																2
ATCCCC/ATGGGG	1																																																																																																																																																																																																1
