Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_001861075.1/fasta/hub_GCA_001861075.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              3293
Total size of examined sequences (bp):           32008239
Total number of identified SSRs:                 93236
Number of SSR containing sequences:              2946
Number of sequences containing more than 1 SSR:  2801
Number of SSRs present in compound formation:    39541


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	16116
2	51345
3	8957
4	7176
5	6777
6	2865

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	819	737	698	621	554	515	488	449	405	367	274	275	227	149	181	157	131	113	110	78	68	66	60	47	32	39	27	28	22	21	28	24	16	20	8	15	12	16	7	7	14	11	7	7	8	17	6	7	9	11	4	8	9	4	4	7	4	9	5	3	4	5	6	4	5	2	2	7	1	2	4	3		1	1	2	3		1	1	3			1	1	1			1				1			1			1		1																																			8130
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	860	683	659	651	600	492	457	454	403	362	283	241	224	187	178	146	101	120	116	81	66	54	51	45	32	25	17	23	30	21	22	16	12	9	11	13	9	11	6	16	8	10	9	8	10	11	8	2	4	3	7	7	4	5	8	8	3	4	5	3	4	8	3	7	2	6	4	4	3	2	2	6	1		1		1	3	2		1	1	2	1			1								1	1						2		1	1																														1	7986
AC	-	-	-	44	21	9	3	5	1																																																																																																																																																83
AG	-	-	-	11	11	2			2	1																																																																																																																																															27
AT	-	-	-	4971	3278	2722	2587	2365	2483	2400	2135	2049	1706	1409	1143	797	576	450	310	178	114	65	50	41	13	11	10	7	4		1	3			1			1						1																																																																																																													31881
CA	-	-	-	61	10	2	3	1	2	1																																																																																																																																															80
CT	-	-	-	1	1																																																																																																																																																				2
GA	-	-	-	4	1	4																																																																																																																																																			9
GC	-	-	-	1																																																																																																																																																					1
GT	-	-	-	14	9	2	4		1																																																																																																																																																30
TA	-	-	-	3806	2436	1723	1621	1461	1355	1290	1178	1023	855	691	538	385	260	197	106	64	37	35	12	12	4	2	7	1	1	1		1		1				1	1																																																																																																																		19105
TC	-	-	-	12	6	3				2																																																																																																																																															23
TG	-	-	-	60	21	10	7	1	3	2																																																																																																																																															104
AAC	-	-	37	9	10	8	6	2	1	1			1	1			1					2																																																																																																																																			79
AAG	-	-	39	6	6		2	2		1			1																																																																																																																																												57
AAT	-	-	567	314	235	186	133	75	45	32	21	13	8	5	3	7	4	2																																																																																																																																							1650
ACA	-	-	9	3	1				1							1				1																																																																																																																																					16
ACC	-	-	3																																																																																																																																																						3
ACG	-	-	1	1																																																																																																																																																					2
ACT	-	-	20	5	3	1				1		1																																																																																																																																													31
AGA	-	-	13	6	5	2	1																																																																																																																																																		27
AGG	-	-		2	1																																																																																																																																																				3
AGT	-	-	7	11		2																																																																																																																																																			20
ATA	-	-	510	270	192	143	110	73	34	22	20	14	10	1	6	4	1	1	1	1		1				2																																																																																																																															1416
ATC	-	-	68	30	8	5	3	2									1															1																																																																																																																									118
ATG	-	-	71	24	13	6	1	1	1																																																																																																																																																117
ATT	-	-	471	312	165	122	81	64	46	27	11	5	6	3	1	1	1	1				1			1	1																	1																																																																																																														1321
CAA	-	-	10	3	3	1		1	2	2		1				1																																																																																																																																									24
CAC	-	-	2																																																																																																																																																						2
CAT	-	-	17	7	4	1	1	2																																																																																																																																																	32
CCA	-	-	2	1																																																																																																																																																					3
CCT	-	-	1		1																																																																																																																																																				2
CTA	-	-	7	4	2	4																																																																																																																																																			17
CTC	-	-	1	1	1																																																																																																																																																				3
CTT	-	-	13	4	1		1																																																																																																																																																		19
GAA	-	-	45	12	9	6	3	1																																																																																																																																																	76
GAC	-	-	2	1																																																																																																																																																					3
GAG	-	-	2	1				1																																																																																																																																																	4
GAT	-	-	34	19	19	2	7	1	2																																																																																																																																																84
GGT	-	-	1	2																																																																																																																																																					3
GTA	-	-	24	4	5	1	2																																																																																																																																																		36
GTG	-	-	1	1	1																																																																																																																																																				3
GTT	-	-	5	7	3	1	2	1		1																																																																																																																																															20
TAA	-	-	246	135	114	84	52	37	29	15	6	8	4	6	3		1					1																																																																																																																																			741
TAC	-	-	28	21	4	5	1	1		2	1		1			1																																																																																																																																									65
TAG	-	-	21	9	2	4	2				1							1					1																																																																																																																																		41
TAT	-	-	496	304	233	167	106	67	48	25	12	13	4	6	2	1	2	1		1																																																																																																																																					1488
TCA	-	-	67	18	4	5		3	1																																																																																																																																																98
TCC	-	-	5	5	3																																																																																																																																																				13
TCG	-	-	3	2																																																																																																																																																					5
TCT	-	-	22	11	4	6	2				1																																																																																																																																														46
TGA	-	-	24	15	5	3			1		2																																																																																																																																														50
TGG	-	-	2																																																																																																																																																						2
TGT	-	-	11	3	6	6	1		3																																																																																																																																																30
TTA	-	-	401	186	122	103	72	48	35	31	8	10	8	3	1	2	2			1	1	1																																																																																																																																			1035
TTC	-	-	45	16	14	4	1	2					1																																																																																																																																												83
TTG	-	-	27	13	8	8	4	3	4	1							1																																																																																																																																								69
AAAC	-	25	6	5	1		1	1	1																														1																																																																																																																		41
AAAG	-	8	6	4	1																																																																																																																																																				19
AAAT	-	530	291	175	67	30	15	5	2	3	1			1																																																																																																																																											1120
AACA	-	4	1		1																																																																																																																																																				6
AAGA	-	5	2	1	2																																																																																																																																																				10
AAGC	-	1																																																																																																																																																							1
AAGG	-	2																																																																																																																																																							2
AAGT	-	1																																																																																																																																																							1
AATA	-	333	214	106	52	31	17	6	2	2	1																																																																																																																																														764
AATC	-	1	1																																																																																																																																																						2
AATG	-		1	3																																																																																																																																																					4
AATT	-	4	2	1																																																																																																																																																					7
ACAA	-	2	3		1																																																																																																																																																				6
ACAT	-	33	20	5	1	5		2					2		1			1																																																																																																																																							70
ACTT	-	1																																																																																																																																																							1
AGAA	-	2	1	1																																																																																																																																																					4
AGAT	-	3																																																																																																																																																							3
ATAA	-	535	230	120	55	25	13	8	5		1			1	1																																																																																																																																										994
ATAC	-	78	34	24	4	6	4	2	4				1	1	4							2							1								1																																																																																																																				166
ATAG	-	1																																																																																																																																																							1
ATGA	-		1	1																																																																																																																																																					2
ATGT	-	23	11	4	3	2	1	1				2		1																																																																																																																																											48
ATTA	-	2	2	1																																																																																																																																																					5
ATTC	-	3	3	3																																																																																																																																																					9
ATTT	-	280	178	70	35	14	6	5	3					1																																																																																																																																											592
CAAA	-	2	5	1	1																																										1																																																																																																										10
CAAT	-		1	1		1																																																																																																																																																			3
CATA	-	26	4	2	1	1	2					1																																																																																																																																													37
CTTA	-			1																																																																																																																																																					1
CTTT	-	2	2	1																																																																																																																																																					5
GAAA	-	7	6	2	2	1																																																																																																																																																			18
GAAG	-	1																																																																																																																																																							1
GAAT	-	5	2																																																																																																																																																						7
GATA	-	1																																																																																																																																																							1
GCTA	-	1																																																																																																																																																							1
GGAT	-		1																																																																																																																																																						1
GTAT	-	20	17	4	5		2	1													1		1				1									1																													1																																																																																								54
GTTT	-	5	1			1																																																																																																																																																			7
TAAA	-	205	78	43	26	7	4	1	1																																																																																																																																																365
TAAC	-	1																																																																																																																																																							1
TAAT	-	7	3																																																																																																																																																						10
TACA	-	22	9	5	2	1	1	1																																																																																																																																																	41
TAGA	-	2																																																																																																																																																							2
TAGT	-	1																																																																																																																																																							1
TATC	-	6																																																																																																																																																							6
TATG	-	58	22	4	4	3	3	2	1	3		1			1	1		1		2							1																																																																																																																														107
TATT	-	572	280	141	73	34	11	6	6	4																																																																																																																																															1127
TCAT	-			1																																																																																																																																																					1
TCTA	-		1																																																																																																																																																						1
TCTT	-	3	3	1	1	2																																																																																																																																																			10
TGAA	-	1	1																																																																																																																																																						2
TGAT	-	1	2																																																																																																																																																						3
TGTA	-	29	6	6	1	4		3	2		1	1							1					1												1																																																																																																																					56
TGTT	-	6																																																																																																																																																							6
TTAA	-	2	5																																																																																																																																																						7
TTAT	-	306	161	81	32	12	6	1	5		1			1																																																																																																																																											606
TTCA	-	1		1																																																																																																																																																					2
TTCT	-	10	1	3	1																																																																																																																																																				15
TTGT	-	2																																																																																																																																																							2
TTTA	-	351	165	98	49	16	6	4	2	1	2																																																																																																																																														694
TTTC	-	29	9	7	2	3	1		1																																																																																																																																																52
TTTG	-	19	5	4	4	1	1						1																																																																																																																																												35
AAAAC	34	9	8	1		1																																																																																																																																																			53
AAAAG	79	18	3	3																																																																																																																																																					103
AAAAT	526	195	94	37	6	3		1	2																																																																																																																																																864
AAACA	4		3																																																																																																																																																						7
AAAGA	12	3	1		1																																																																																																																																																				17
AAAGC	4																																																																																																																																																								4
AAAGG	5		1																																																																																																																																																						6
AAATA	215	55	30	7	2		2																																																																																																																																																		311
AAATC	6																																																																																																																																																								6
AAATG	14																																																																																																																																																								14
AAATT	15	4	1	2																																																																																																																																																					22
AACAA	2	1			1																																																																																																																																																				4
AACAC	1																																																																																																																																																								1
AACAG	2																																																																																																																																																								2
AACAT	5																																																																																																																																																								5
AACCA		1																																																																																																																																																							1
AAGAA	16	1	2		1																																																																																																																																																				20
AAGGA	1	1																																																																																																																																																							2
AATAA	188	49	15	3	2	2		1																																																																																																																																																	260
AATAC	5	5		1																																																																																																																																																					11
AATAG	4																																																																																																																																																								4
AATAT	125	34	14	5	3	1		1	2		1	3	1								2																																																																																																																																				192
AATGA	1	2																																																																																																																																																							3
AATGG	14	5	1	2	1	2	1	3	2		1				2																																																																																																																																										34
AATTA	1	1																																																																																																																																																							2
AATTC	3	1																																																																																																																																																							4
AATTG	1	1	1																																																																																																																																																						3
AATTT	7																																																																																																																																																								7
ACAAA	5	2		1	1	1				1																																																																																																																																															11
ACAAC	1																																																																																																																																																								1
ACAAT		3																																																																																																																																																							3
ACATC	1																																																																																																																																																								1
AGAAA	18	9	3																																																																																																																																																						30
AGAAC	1																																																																																																																																																								1
AGAAT	3																																																																																																																																																								3
AGGAA	2	1																																																																																																																																																							3
AGTAT	1																																																																																																																																																								1
ATAAA	135	39	9	1	2										1																																																																																																																																										187
ATAAC	2																																																																																																																																																								2
ATAAG	1																																																																																																																																																								1
ATAAT	86	19	7	7	1	1	1		1	1						1			1	1																																																																																																																																					127
ATACA	1	1																																																																																																																																																							2
ATACT	1																																																																																																																																																								1
ATAGA	1																																																																																																																																																								1
ATATA	375	72	22	9	4	5	3	2	1	1		1	2	1	3								1																																																																																																																																		502
ATATC	7	1		1																																																																																																																																																					9
ATATG	6	2																																																																																																																																																							8
ATATT	71	25	5		2		2		1		1			1			1																																																																																																																																								109
ATCAA		1																																																																																																																																																							1
ATCAT	1	1	2																																																																																																																																																						4
ATCTC	1																																																																																																																																																								1
ATGAA	4	1																																																																																																																																																							5
ATGAT	2																																																																																																																																																								2
ATGGA	2													1																																																																																																																																											3
ATTAA	7	4																																																																																																																																																							11
ATTAG	1																																																																																																																																																								1
ATTAT	69	18	5	2			2	2	1		1				1												1																																																																																																																														102
ATTCC	1	1	1																																																																																																																																																						3
ATTTA	10	7	1																																																																																																																																																						18
ATTTC	12	4	2	1																																																																																																																																																					19
ATTTG	3	1	1																																																																																																																																																						5
ATTTT	137	43	15	11	1	1				1																																																																																																																																															209
CAAAA	2	2																																																																																																																																																							4
CAAAC	1																																																																																																																																																								1
CAAAT	1	1																																																																																																																																																							2
CAATA	1	3																																																																																																																																																							4
CACAT	1																																																																																																																																																								1
CAGAA	1																																																																																																																																																								1
CATAA	5																																																																																																																																																								5
CATAT	4	2																																																																																																																																																							6
CATCA	10																																																																																																																																																								10
CATTA	1																																																																																																																																																								1
CATTC	3								1																																																																																																																																																4
CATTT	3																																																																																																																																																								3
CCACA	2																																																																																																																																																								2
CCTTC		1																																																																																																																																																							1
CCTTT	1																																																																																																																																																								1
CTATT	1	1																																																																																																																																																							2
CTTTC		1	1																																																																																																																																																						2
CTTTT	11	7	3	1																																																																																																																																																					22
GAAAA	51	7	2																																																																																																																																																						60
GAAAG		1																																																																																																																																																							1
GAAAT	6	1																																																																																																																																																							7
GAAGA	1																																																																																																																																																								1
GAATA	1																																																																																																																																																								1
GAATG	30	9	8	1	2	2	1		2										1		1																																																																																																																																				57
GAATT		1																																																																																																																																																							1
GATAA	1																																																																																																																																																								1
GATTT	2																																																																																																																																																								2
GGAAA	1																																																																																																																																																								1
GGAAT	4	22	1	7	7	9	7	2					1	1				1																																																																																																																																							62
GTATA	1																																																																																																																																																								1
GTGGT	4																																																																																																																																																								4
GTTCA	1																																																																																																																																																								1
GTTTG		2																																																																																																																																																							2
GTTTT	3			1																																																																																																																																																					4
TAAAA	105	33	9	3	1						1																																																																																																																																														152
TAAAG	1																																																																																																																																																								1
TAAAT	17	2																																																																																																																																																							19
TAATA	46	11	7		2				1		1								1			1																																																																																																																																			70
TAATG	3																																																																																																																																																								3
TAATT	9	3																																																																																																																																																							12
TAGAA	1																																																																																																																																																								1
TATAA	47	24	8		1					1																																																																																																																																															81
TATAC	1																																																																																																																																																								1
TATAT	424	51	21	7	2	3	2		1	1	1		2		1			1								2																																																																																																																															519
TATCA	1																																																																																																																																																								1
TATCT	3		1																																																																																																																																																						4
TATGT	5																																																																																																																																																								5
TATTA	94	34	25	5	3	4	4					2					1													1																																																																																																																											173
TATTC	3																																																																																																																																																								3
TATTG	4	2	1																																																																																																																																																						7
TATTT	174	54	36	8	3	1					1		1																																																																																																																																												278
TCATA	1				1																																																																																																																																																				2
TCCAT	2		1																																																																																																																																																						3
TCTTA	2																																																																																																																																																								2
TCTTT	7		1																																																																																																																																																						8
TGAAA	2	3	1																																																																																																																																																						6
TGATA	1		1																																																																																																																																																						2
TGATG	14																																																																																																																																																								14
TGATT	1																																																																																																																																																								1
TGGAA	8	8	9	1		3																		1																																																																																																																																	30
TGTAT	1	2																																																																																																																																																							3
TGTTA			1	1																																																																																																																																																					2
TGTTT	10	4	1																																																																																																																																																						15
TTAAA	4	2	1																																																																																																																																																						7
TTAAT	11	1																																																																																																																																																							12
TTATA	86	33	8	2	2	1				2					1						1																																																																																																																																				136
TTATG	1																																																																																																																																																								1
TTATT	231	97	34	17	3	1	1						1																																																																																																																																												385
TTCAT	1																																																																																																																																																								1
TTCCA	3																																																																																																																																																								3
TTCCC	1																																																																																																																																																								1
TTCCT	1																																																																																																																																																								1
TTCTA				1																																																																																																																																																					1
TTCTT	16	3	1	1	2																																																																																																																																																				23
TTGAT	1	1																																																																																																																																																							2
TTGGC	1																																																																																																																																																								1
TTGTC		1																																																																																																																																																							1
TTGTT	7	4				1			1	1																																																																																																																																															14
TTTAA	6	1	1																																																																																																																																																						8
TTTAT	250	89	31	10	2		1		1																																																																																																																																																384
TTTCA	2	4	1																																																																																																																																																						7
TTTCC	3			1																																																																																																																																																					4
TTTCT	26	6	3	1																																																																																																																																																					36
TTTGA	2	1																																																																																																																																																							3
TTTGC	1																																																																																																																																																								1
TTTGT	12	2	1					1																																																																																																																																																	16
TTTTA	319	135	44	13	3	2	1				1																																																																																																																																														518
TTTTC	96	21	3	2																																																																																																																																																					122
TTTTG	30	13		1																																																																																																																																																					44
AAAAAC	5	5	3																																																																																																																																																						13
AAAAAG	38	7	4		1																																																																																																																																																				50
AAAAAT	126	22	5		2																																																																																																																																																				155
AAAACA	5			1																																																																																																																																																					6
AAAAGA	13	6		1																																																																																																																																																					20
AAAAGG	1																																																																																																																																																								1
AAAATA	35	17	1																																																																																																																																																						53
AAAATC	1																																																																																																																																																								1
AAAATG	3	3																																																																																																																																																							6
AAAATT	9	9	1																																																																																																																																																						19
AAACAA	2																																																																																																																																																								2
AAACAC							1		2																																																																																																																																																3
AAACAT	2	1				1																																																																																																																																																			4
AAAGAA	9	2	1																																																																																																																																																						12
AAAGAG		1																																																																																																																																																							1
AAAGAT	6																																																																																																																																																								6
AAAGGG	1																																																																																																																																																								1
AAAGTA		1																																																																																																																																																							1
AAATAA	40	3	3	1																																																																																																																																																					47
AAATAC	2																																																																																																																																																								2
AAATAG			1		1																																																																																																																																																				2
AAATAT	61	12	6	1																																																																																																																																																					80
AAATGA	2	2																																																																																																																																																							4
AAATGC		1																																																																																																																																																							1
AAATGG	1																																																																																																																																																								1
AAATGT	1	1																																																																																																																																																							2
AAATTA	4																																																																																																																																																								4
AAATTT	2																																																																																																																																																								2
AACAAA		2																																																																																																																																																							2
AACAAG	1																																																																																																																																																								1
AACAAT	7		1																																																																																																																																																						8
AACACA	2																																																																																																																																																								2
AACATA	3	1																																																																																																																																																							4
AACTAT	1																																																																																																																																																								1
AACTTT	1																																																																																																																																																								1
AAGAAA	16	9		1																																																																																																																																																					26
AAGAAT	2																																																																																																																																																								2
AAGAGC				1																																																																																																																																																					1
AAGATG	3																																																																																																																																																								3
AAGGAA	2																																																																																																																																																								2
AAGGAC							2																																																																																																																																																		2
AAGGTC	1																																																																																																																																																								1
AATAAA	25	6	1																																																																																																																																																						32
AATAAC	9	1	1																																																																																																																																																						11
AATAAG	3																																																																																																																																																								3
AATAGA	1																																																																																																																																																								1
AATAGT	2	1	1																																																																																																																																																						4
AATATA	29	8	1																																																																																																																																																						38
AATATC	1																																																																																																																																																								1
AATATT	4																																																																																																																																																								4
AATCAG			2																																																																																																																																																						2
AATCAT		1																																																																																																																																																							1
AATGAA	4	2																																																																																																																																																							6
AATGAT	8																																																																																																																																																								8
AATGCT	1																																																																																																																																																								1
AATGTA	1		1	1																																																																																																																																																					3
AATTAA	1																																																																																																																																																								1
AATTAC			1																																																																																																																																																						1
AATTAT	7	3	1																																																																																																																																																						11
AATTTA	1																																																																																																																																																								1
AATTTT		2	1																																																																																																																																																						3
ACAAAA	3																																																																																																																																																								3
ACAAAC	2																																																																																																																																																								2
ACAAAG	1																																																																																																																																																								1
ACAAAT	1	3			1																																																																																																																																																				5
ACAAGA	3																																																																																																																																																								3
ACAATA	1	1			1																																																																																																																																																				3
ACAATT			1																																																																																																																																																						1
ACACAT	1																																																																																																																																																								1
ACAGAT	1																																																																																																																																																								1
ACATAA	3	1																																																																																																																																																							4
ACATAC	5	1	1																																																																																																																																																						7
ACATAT	7	1	1																																																																																																																																																						9
ACATGT	1																																																																																																																																																								1
ACATTA	1																																																																																																																																																								1
ACATTG			1																																																																																																																																																						1
ACATTT		1																																																																																																																																																							1
ACCAAG	1																																																																																																																																																								1
ACCAGC		1																																																																																																																																																							1
ACCTCC	1																																																																																																																																																								1
ACTATT	6																																																																																																																																																								6
AGAAAA	10	1	4		1																																																																																																																																																				16
AGAAAC	1																																																																																																																																																								1
AGAAAT	1																																																																																																																																																								1
AGAAGG	3	1																																																																																																																																																							4
AGAATA		1																																																																																																																																																							1
AGAATT	1																																																																																																																																																								1
AGAGAA	3																																																																																																																																																								3
AGATAA		1																																																																																																																																																							1
AGATAT	1				1																																																																																																																																																				2
AGCACC	2																																																																																																																																																								2
AGGAAC	2																																																																																																																																																								2
AGGATA			1																																																																																																																																																						1
AGGGTT	1																																																																																																																																																								1
AGGTTT	1																																																																																																																																																								1
AGTAAT	2																																																																																																																																																								2
ATAAAA	20	4	2																																																																																																																																																						26
ATAAAC	11	5	2																																																																																																																																																						18
ATAAAG	2		1																																																																																																																																																						3
ATAAAT	110	24	6	1	1	1																																																																																																																																																			143
ATAACA	1																																																																																																																																																								1
ATAAGA	1																																																																																																																																																								1
ATAATG	5		1																																																																																																																																																						6
ATAATT	8	5																																																																																																																																																							13
ATACAC	2	2																																																																																																																																																							4
ATACAT	4		1																																																																																																																																																						5
ATAGAT	2											1																																																																																																																																													3
ATAGTA	1																																																																																																																																																								1
ATAGTC	2	1																																																																																																																																																							3
ATATAA	100	11	2	1																																																																																																																																																					114
ATATAC	13	2	1		1	1																																																																																																																																																			18
ATATAG	3																																																																																																																																																								3
ATATGA	1																																																																																																																																																								1
ATATGC	2																																																																																																																																																								2
ATATGT	6	2	1																																																																																																																																																						9
ATATTA		1																																																																																																																																																							1
ATATTC	2																																																																																																																																																								2
ATATTT	34	5	3																																																																																																																																																						42
ATCAAC	2																																																																																																																																																								2
ATCAGC		1																																																																																																																																																							1
ATCATA	1																																																																																																																																																								1
ATCATG	1																																																																																																																																																								1
ATCATT	6	1	1																																																																																																																																																						8
ATCGTC		1																																																																																																																																																							1
ATCTAT	2																																																																																																																																																								2
ATCTTT	2																																																																																																																																																								2
ATGAAA		1																																																																																																																																																							1
ATGAAC	1								1																																																																																																																																																2
ATGAAT		1																																																																																																																																																							1
ATGATA	13	3			1																																																																																																																																																				17
ATGATC	1																																																																																																																																																								1
ATGATT		3																																																																																																																																																							3
ATGGTG	1																																																																																																																																																								1
ATGTAA	2	1	2																																																																																																																																																						5
ATGTAT	5																																																																																																																																																								5
ATGTCC	1																																																																																																																																																								1
ATGTTC	2												1																																																																																																																																												3
ATTAAA	4																																																																																																																																																								4
ATTAAC	4																																																																																																																																																								4
ATTAAT	4																																																																																																																																																								4
ATTACA	1																																																																																																																																																								1
ATTACC	2																																																																																																																																																								2
ATTACT		1		2																																																																																																																																																					3
ATTATA	9			1																																																																																																																																																					10
ATTATC	15																																																																																																																																																								15
ATTCCT	1																																																																																																																																																								1
ATTTAA	2																																																																																																																																																								2
ATTTAC	2		1																																																																																																																																																						3
ATTTAT	29	4	1																																																																																																																																																						34
ATTTGC	2																																																																																																																																																								2
ATTTGT					1																																																																																																																																																				1
ATTTTA	5	4																																																																																																																																																							9
ATTTTC	7	6								1																																																																																																																																															14
ATTTTG		1																																																																																																																																																							1
ATTTTT	36	3	1	2																																																																																																																																																					42
CAAAAA	3																																																																																																																																																								3
CAAATG	1																																																																																																																																																								1
CAACAC	3																																																																																																																																																								3
CAAGAA	1																																																																																																																																																								1
CAAGAG	1																																																																																																																																																								1
CAATAA		3																																																																																																																																																							3
CAATAC	1																																																																																																																																																								1
CATAAA	3	1																																																																																																																																																							4
CATATA	2																																																																																																																																																								2
CATCAA	2																																																																																																																																																								2
CATCAC	2																																																																																																																																																								2
CATCGT		1																																																																																																																																																							1
CATGAA	1																																																																																																																																																								1
CATGAG	1																																																																																																																																																								1
CATGAT	1	1																																																																																																																																																							2
CATTAA	2	1																																																																																																																																																							3
CATTAT	1	1	1																																																																																																																																																						3
CATTTA			1																																																																																																																																																						1
CATTTC	1																			1																																																																																																																																					2
CATTTT	2			1																																																																																																																																																					3
CCATTA	4	4																																																																																																																																																							8
CCATTT	3	1																																																																																																																																																							4
CCGCCT	1																																																																																																																																																								1
CCTAAA	2																																																																																																																																																								2
CCTTAT		2																																																																																																																																																							2
CCTTCC		1																																																																																																																																																							1
CCTTTA	2																																																																																																																																																								2
CCTTTC		1																																																																																																																																																							1
CCTTTT			1		2																																																																																																																																																				3
CGATGA	1																																																																																																																																																								1
CGTCTT	2																																																																																																																																																								2
CTACCA	1																																																																																																																																																								1
CTATTA		1																																																																																																																																																							1
CTCTTT	2																																																																																																																																																								2
CTGGTG	2																																																																																																																																																								2
CTTCAC	3																																																																																																																																																								3
CTTCAT	2																																																																																																																																																								2
CTTCGT	2																																																																																																																																																								2
CTTCTC	1																																																																																																																																																								1
CTTCTG	1																																																																																																																																																								1
CTTGAG	1																																																																																																																																																								1
CTTTTA	1																																																																																																																																																								1
CTTTTC	2	2																																																																																																																																																							4
CTTTTT	9	7																																																																																																																																																							16
GAAAAA	8	8	5		1																																																																																																																																																				22
GAAAAC	1																																																																																																																																																								1
GAAAAG	4																																																																																																																																																								4
GAAAAT	6		2	1	1			1																																																																																																																																																	11
GAAAGA	2																																																																																																																																																								2
GAAATG																											1																																																																																																																														1
GAAATT	1																																																																																																																																																								1
GAACAC	2																																																																																																																																																								2
GAACAT	1																																																																																																																																																								1
GAAGAC		1																																																																																																																																																							1
GAAGAG	2																																																																																																																																																								2
GAAGAT	4																																																																																																																																																								4
GAAGGT	1																																																																																																																																																								1
GAATAA	2																																																																																																																																																								2
GAATAT			1																																																																																																																																																						1
GACAAA	1																																																																																																																																																								1
GACTCA		1																																																																																																																																																							1
GAGAAA		1																																																																																																																																																							1
GAGGAT		1																																																																																																																																																							1
GATAAA	4		1																																																																																																																																																						5
GATAAC	1	1																																																																																																																																																							2
GATAAG	2																																																																																																																																																								2
GATAAT	1																																																																																																																																																								1
GATAGA	1																																																																																																																																																								1
GATATA	2																																																																																																																																																								2
GATCTT				1																																																																																																																																																					1
GATGAA	1	1																																																																																																																																																							2
GATGAC	3	1																																																																																																																																																							4
GATGGG	1																																																																																																																																																								1
GATTCA	1																																																																																																																																																								1
GCATTT	1																																																																																																																																																								1
GGAAAT			1																																																																																																																																																						1
GGAGGC	1																																																																																																																																																								1
GGTGAA	1																																																																																																																																																								1
GGTTTA	18	1																																																																																																																																																							19
GTAAAA	1																																																																																																																																																								1
GTAAAT	1		1																																																																																																																																																						2
GTAATA	3	1	1																																																																																																																																																						5
GTATAT	3	1																																																																																																																																																							4
GTATTA	1																																																																																																																																																								1
GTCAAC	1																																																																																																																																																								1
GTCTTC	2																																																																																																																																																								2
GTGCTG	2																																																																																																																																																								2
GTGGTA	1																																																																																																																																																								1
GTGTTA	1																																																																																																																																																								1
GTGTTG	4																																																																																																																																																								4
GTTATT	2				1																																																																																																																																																				3
GTTTAT		1	2	2																																																																																																																																																					5
TAAAAA	13	2	2																																																																																																																																																						17
TAAAAG		1																																																																																																																																																							1
TAAAAT	2																																																																																																																																																								2
TAAACA	3				1																																																																																																																																																				4
TAAAGA	1																																																																																																																																																								1
TAAATA	21	5	5	1																																																																																																																																																					32
TAAATG	4	2																																																																																																																																																							6
TAACAA	2																																																																																																																																																								2
TAATAG	6	2																																																																																																																																																							8
TAATAT	1																																																																																																																																																								1
TAATGA	3	1																																																																																																																																																							4
TAATTA	1	2																																																																																																																																																							3
TAATTG		2																																																																																																																																																							2
TAATTT	2																																																																																																																																																								2
TACATA	1	1	1																																																																																																																																																						3
TACCAC	1																																																																																																																																																								1
TACTAT	3	4																																																																																																																																																							7
TACTTC	1																																																																																																																																																								1
TAGTAA	3			1																																																																																																																																																					4
TAGTTC	1	1																																																																																																																																																							2
TATAAA	10	3		1																																																																																																																																																					14
TATAAT	9	3																																																																																																																																																							12
TATACA	1																																																																																																																																																								1
TATATC	1																																																																																																																																																								1
TATATG	12		1	1	1																																																																																																																																																				15
TATATT	117	20	4	4																																																																																																																																																					145
TATCAT	3		1																																																																																																																																																						4
TATCTT	3		1																																																																																																																																																						4
TATGTA	2																																																																																																																																																								2
TATGTG	1																																																																																																																																																								1
TATGTT	3	2			1																																																																																																																																																				6
TATTAA	8	1																																																																																																																																																							9
TATTAC	10	1			1	1																																																																																																																																																			13
TATTTA	79	15	2		1																																																																																																																																																				97
TATTTC	1																																																																																																																																																								1
TATTTG	1	1			2																																																																																																																																																				4
TATTTT	46	13	2	1																																																																																																																																																					62
TCAAAA	2	1	1																																																																																																																																																						4
TCAAGC		1																																																																																																																																																							1
TCACAA							1																																																																																																																																																		1
TCAGAC	1																																																																																																																																																								1
TCATAT		1																																																																																																																																																							1
TCATCG		1																																																																																																																																																							1
TCATCT	3	1																																																																																																																																																							4
TCATTA		1																																																																																																																																																							1
TCATTG	1																																																																																																																																																								1
TCATTT	3	5																																																																																																																																																							8
TCCATT	1																																																																																																																																																								1
TCCTCA	1	1																																																																																																																																																							2
TCCTCT	2																																																																																																																																																								2
TCCTTC		1																																																																																																																																																							1
TCGTCA	1				1																																																																																																																																																				2
TCGTCT	1																																																																																																																																																								1
TCTATA	2																																																																																																																																																								2
TCTCCT			1																																																																																																																																																						1
TCTCTA	5																																																																																																																																																								5
TCTCTT	1	1																																																																																																																																																							2
TCTTCA	5	2																																																																																																																																																							7
TCTTCC	2	1																																																																																																																																																							3
TCTTGA	1																																																																																																																																																								1
TCTTTA	4																																																																																																																																																								4
TCTTTC	3	1		1																																																																																																																																																					5
TCTTTT	11	1																																																																																																																																																							12
TGAAAA	1																																																																																																																																																								1
TGAAAT	1																																																																																																																																																								1
TGAAGA		1																																																																																																																																																							1
TGACGA		1																																																																																																																																																							1
TGATAA			1																																																																																																																																																						1
TGATGG	1																																																																																																																																																								1
TGATGT	1																																																																																																																																																								1
TGATTA	1	2																																																																																																																																																							3
TGATTT	1																																																																																																																																																								1
TGCAAC	1																																																																																																																																																								1
TGCTGG		1		1																																																																																																																																																					2
TGGAGG	1																																																																																																																																																								1
TGGTGC	1	1																																																																																																																																																							2
TGTAAA	1																																																																																																																																																								1
TGTATA	1	1																																																																																																																																																							2
TGTATT	2			1																																																																																																																																																					3
TGTGAG	1																																																																																																																																																								1
TGTGCT	1																																																																																																																																																								1
TGTGTA	1	1		1																																																																																																																																																					3
TGTGTT	1								2	1																																																																																																																																															4
TGTTGA	1																																																																																																																																																								1
TGTTTA	2																																																																																																																																																								2
TGTTTG	1																																																																																																																																																								1
TGTTTT	1																																																																																																																																																								1
TTAAAA		1																																																																																																																																																							1
TTAAAT		1																																																																																																																																																							1
TTAATA	1																																																																																																																																																								1
TTACAT		1																																																																																																																																																							1
TTAGGG	6	1		1																																																																																																																																																					8
TTATAA	1																																																																																																																																																								1
TTATAG	1																																																																																																																																																								1
TTATAT	18		1																																																																																																																																																						19
TTATCA	2																																																																																																																																																								2
TTATCC	1																																																																																																																																																								1
TTATCT	2																																																																																																																																																								2
TTATGA	1																																																																																																																																																								1
TTATTC	2																																																																																																																																																								2
TTATTG	4	1	1																																																																																																																																																						6
TTATTT	27	5																																																																																																																																																							32
TTCATC	1			1																																																																																																																																																					2
TTCATT		1																																																																																																																																																							1
TTCCAT	1																																																																																																																																																								1
TTCCTC	4																																																																																																																																																								4
TTCTAT	1																																																																																																																																																								1
TTCTTA	5																																																																																																																																																								5
TTCTTT	19		2		1																																																																																																																																																				22
TTGATG	1																																																																																																																																																								1
TTGATT	1	1																																																																																																																																																							2
TTGCTG	1																																																																																																																																																								1
TTGTAA			1	1																																																																																																																																																					2
TTGTAT	1																																																																																																																																																								1
TTGTCC							1																																																																																																																																																		1
TTGTGT	1																																																																																																																																																								1
TTGTTC	2																																																																																																																																																								2
TTGTTT	1	2																																																																																																																																																							3
TTTAAT	3																																																																																																																																																								3
TTTAGG	2																																																																																																																																																								2
TTTATA	55	5	2																																																																																																																																																						62
TTTATC	1																																																																																																																																																								1
TTTATG	6	6	2																																																																																																																																																						14
TTTATT	52	7																																																																																																																																																							59
TTTCAT	1	1																																																																																																																																																							2
TTTCCT	1	1	1																																																																																																																																																						3
TTTCTA	2		1		1																																																																																																																																																				4
TTTCTG	1																																																																																																																																																								1
TTTCTT	24	4	1																																																																																																																																																						29
TTTGAT	1																																																																																																																																																								1
TTTGTA	1	1																																																																																																																																																							2
TTTGTC	1	1																																																																																																																																																							2
TTTGTG	2	1							2																																																																																																																																																5
TTTGTT	2	2			1																																																																																																																																																				5
TTTTAA	1	1																																																																																																																																																							2
TTTTAC	3																																																																																																																																																								3
TTTTAT	35	3																																																																																																																																																							38
TTTTCA	2	2																																																																																																																																																							4
TTTTCC	5	5																	1																																																																																																																																						11
TTTTCT	16	8	1		1																																																																																																																																																				26
TTTTGA	1																																																																																																																																																								1
TTTTGT	4	1	1																																																																																																																																																						6
TTTTTA	77	23	4	1	1																																																																																																																																																				106
TTTTTC	49	20	5		1	1																																																																																																																																																			76
TTTTTG	8	6																																																																																																																																																							14

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1679	1420	1357	1272	1154	1007	945	903	808	729	557	516	451	336	359	303	232	233	226	159	134	120	111	92	64	64	44	51	52	42	50	40	28	29	19	28	21	27	13	23	22	21	16	15	18	28	14	9	13	14	11	15	13	9	12	15	7	13	10	6	8	13	9	11	7	8	6	11	4	4	6	9	1	1	2	2	4	3	3	1	4	1	2	2	1	1	1		1				1		1	2			1		1	2		1	1																														1	16116
AC/GT	-	-	-	179	61	23	17	7	7	3																																																																																																																																															297
AG/CT	-	-	-	28	19	9			2	3																																																																																																																																															61
AT/AT	-	-	-	8777	5714	4445	4208	3826	3838	3690	3313	3072	2561	2100	1681	1182	836	647	416	242	151	100	62	53	17	13	17	8	5	1	1	4		1	1			2	1					1																																																																																																													50986
CG/CG	-	-	-	1																																																																																																																																																					1
AAC/GTT	-	-	99	38	31	24	13	7	11	5		1	1	1		2	2			1		2																																																																																																																																			238
AAG/CTT	-	-	177	55	39	18	10	5		1	1		2																																																																																																																																												308
AAT/ATT	-	-	2691	1521	1061	805	554	364	237	152	78	63	40	24	16	15	11	5	1	3	1	4			1	3																	1																																																																																																														7651
ACC/GGT	-	-	11	4	1																																																																																																																																																				16
ACG/CGT	-	-	6	4																																																																																																																																																					10
ACT/AGT	-	-	107	54	16	17	5	1		3	2	1	1			1		1					1																																																																																																																																		210
AGG/CCT	-	-	9	9	6			1																																																																																																																																																	25
ATC/ATG	-	-	281	113	53	22	12	9	5		2						1															1																																																																																																																									499
AAAC/GTTT	-	65	21	10	8	2	2	1	1				1																										1								1																																																																																																										113
AAAG/CTTT	-	66	30	20	9	6	1		1																																																																																																																																																133
AAAT/ATTT	-	3112	1597	834	389	169	78	36	26	10	6			4	1																																																																																																																																										6262
AACT/AGTT	-	2																																																																																																																																																							2
AAGC/CTTG	-	1																																																																																																																																																							1
AAGG/CCTT	-	3																																																																																																																																																							3
AAGT/ACTT	-	2		1																																																																																																																																																					3
AATC/ATTG	-	2	4	1		1																																																																																																																																																			8
AATG/ATTC	-	10	8	9																																																																																																																																																					27
AATT/AATT	-	15	12	2																																																																																																																																																					29
ACAT/ATGT	-	289	123	54	21	22	13	12	7	3	1	5	3	2	6	1		2	1	2	1	2	1	1			2		1							2	1																												1																																																																																								579
AGAT/ATCT	-	13	1																																																																																																																																																						14
AGCT/AGCT	-	1																																																																																																																																																							1
ATCC/ATGG	-		1																																																																																																																																																						1
AAAAC/GTTTT	109	37	13	4	2	3		1	1	2																																																																																																																																															172
AAAAG/CTTTT	332	75	22	8	4																																																																																																																																																				441
AAAAT/ATTTT	2280	789	317	110	25	10	5	2	3	1	3		2		1																																																																																																																																										3548
AAACC/GGTTT	1	3																																																																																																																																																							4
AAAGC/CTTTG	5																																																																																																																																																								5
AAAGG/CCTTT	14	4	2	1																																																																																																																																																					21
AAAGT/ACTTT	1																																																																																																																																																								1
AAATC/ATTTG	16	5	1																																																																																																																																																						22
AAATG/ATTTC	45	15	4	1																																																																																																																																																					65
AAATT/AATTT	87	25	4	2																																																																																																																																																					118
AACAC/GTGTT	2																																																																																																																																																								2
AACAG/CTGTT	4																																																																																																																																																								4
AACAT/ATGTT	18		1	1																																																																																																																																																					20
AACTG/AGTTC	1																																																																																																																																																								1
AAGAC/CTTGT		1																																																																																																																																																							1
AAGAG/CTCTT	1																																																																																																																																																								1
AAGAT/ATCTT	7		1																																																																																																																																																						8
AAGCC/CTTGG	1																																																																																																																																																								1
AAGGG/CCCTT	1	1																																																																																																																																																							2
AATAC/ATTGT	12	16	1	1																																																																																																																																																					30
AATAG/ATTCT	14	1		1																																																																																																																																																					16
AATAT/ATATT	1423	321	122	37	20	15	14	5	8	6	5	6	5	2	6	1	2	1	2	1	3	1	1			2	1			1																																																																																																																											2011
AATCT/AGATT	1																																																																																																																																																								1
AATGG/ATTCC	67	45	21	11	10	16	9	5	5		1		1	2	2			1	1		1			1																																																																																																																																	199
AATGT/ACATT	4																																																																																																																																																								4
AATTC/AATTG	4	3	1																																																																																																																																																						8
ACACC/GGTGT	6																																																																																																																																																								6
ACATC/ATGTG	26																																																																																																																																																								26
ACTAT/AGTAT	4																																																																																																																																																								4
AGATG/ATCTC	1																																																																																																																																																								1
ATATC/ATATG	23	6	3	1	1																																																																																																																																																				34
AAAAAC/GTTTTT	34	18	4	1	1																																																																																																																																																				58
AAAAAG/CTTTTT	222	73	23	2	6	1																																																																																																																																																			327
AAAAAT/ATTTTT	532	108	21	5	3																																																																																																																																																				669
AAAACG/CGTTTT	1																																																																																																																																																								1
AAAAGG/CCTTTT	15	8	2		2														1																																																																																																																																						28
AAAAGT/ACTTTT	5	2																																																																																																																																																							7
AAAATC/ATTTTG	7	3	1																																																																																																																																																						11
AAAATG/ATTTTC	31	23	2	2	1			1		1																																																																																																																																															61
AAAATT/AATTTT	31	17	2																																																																																																																																																						50
AAACAC/GTGTTT	9	1					1		6	1																																																																																																																																															18
AAACAG/CTGTTT	2																																																																																																																																																								2
AAACAT/ATGTTT	36	18	6	2	2	1																																																																																																																																																			65
AAACCT/AGGTTT	23	1																																																																																																																																																							24
AAAGAC/CTTTGT	3	1																																																																																																																																																							4
AAAGAG/CTCTTT	11	4		1																																																																																																																																																					16
AAAGAT/ATCTTT	25	1	3																																																																																																																																																						29
AAAGGG/CCCTTT	1	1																																																																																																																																																							2
AAAGGT/ACCTTT	2																																																																																																																																																								2
AAAGTT/AACTTT	1																																																																																																																																																								1
AAATAC/ATTTGT	8	5		1	4																																																																																																																																																				18
AAATAG/ATTTCT	6		2		2																																																																																																																																																				10
AAATAT/ATATTT	663	112	33	9	2	1																																																																																																																																																			820
AAATGC/ATTTGC	4	1																																																																																																																																																							5
AAATGG/ATTTCC	7	1	1																	1							1																																																																																																																														11
AAATGT/ACATTT	12	6	6	1																																																																																																																																																					25
AAATTG/AATTTC	2																																																																																																																																																								2
AAATTT/AAATTT	5	1																																																																																																																																																							6
AACAAG/CTTGTT	7																																																																																																																																																								7
AACAAT/ATTGTT	26	6	3		2																																																																																																																																																				37
AACACC/GGTGTT	7																																																																																																																																																								7
AACACG/CGTGTT	2																																																																																																																																																								2
AACACT/AGTGTT	1																																																																																																																																																								1
AACAGC/CTGTTG	1																																																																																																																																																								1
AACAGG/CCTGTT	2																																																																																																																																																								2
AACATC/ATGTTG	7																																																																																																																																																								7
AACATG/ATGTTC	5								1				1																																																																																																																																												7
AACATT/AATGTT	7	1																																																																																																																																																							8
AACCCT/AGGGTT	7	1		1																																																																																																																																																					9
AACGAT/ATCGTT	1	1																																																																																																																																																							2
AACGTC/ACGTTG	1																																																																																																																																																								1
AACTAG/AGTTCT	1	1																																																																																																																																																							2
AACTAT/AGTTAT	2																																																																																																																																																								2
AACTGC/AGTTGC	1																																																																																																																																																								1
AAGAAT/ATTCTT	15	1																																																																																																																																																							16
AAGACC/CTTGGT	1																																																																																																																																																								1
AAGACG/CGTCTT	7	1																																																																																																																																																							8
AAGAGC/CTCTTG	1			1																																																																																																																																																					2
AAGAGG/CCTCTT	10	1																																																																																																																																																							11
AAGATC/ATCTTG	1			1																																																																																																																																																					2
AAGATG/ATCTTC	19	5		1																																																																																																																																																					25
AAGCAC/CTTGTG	1																																																																																																																																																								1
AAGCAG/CTGCTT	1																																																																																																																																																								1
AAGCTC/AGCTTG	1	1																																																																																																																																																							2
AAGGAC/CCTTGT							3																																																																																																																																																		3
AAGGAG/CCTTCT	4	2	1																																																																																																																																																						7
AAGGAT/ATCCTT	3	2	1																																																																																																																																																						6
AAGGGG/CCCCTT		1																																																																																																																																																							1
AAGGTC/ACCTTG	1																																																																																																																																																								1
AAGGTG/ACCTTC	5																																																																																																																																																								5
AAGTAG/ACTTCT	1																																																																																																																																																								1
AATACC/ATTGGT	1																																																																																																																																																								1
AATACT/AGTATT	1																																																																																																																																																								1
AATAGG/ATTCCT	1																																																																																																																																																								1
AATAGT/ACTATT	36	11	2	3	1	1																																																																																																																																																			54
AATATC/ATATTG	1																																																																																																																																																								1
AATATG/ATATTC	3	2	1																																																																																																																																																						6
AATATT/AATATT	18	2																																																																																																																																																							20
AATCAC/ATTGTG							1																																																																																																																																																		1
AATCAG/ATTCTG			2																																																																																																																																																						2
AATCAT/ATGATT	3	6																																																																																																																																																							9
AATCTG/AGATTC	1																																																																																																																																																								1
AATGAC/ATTGTC	1																																																																																																																																																								1
AATGAT/ATCATT	57	7	5		1																																																																																																																																																				70
AATGCT/AGCATT	1																																																																																																																																																								1
AATGGT/ACCATT	6	4																																																																																																																																																							10
AATGTC/ACATTG			1																																																																																																																																																						1
AATTAC/AATTGT	1	2	3	1																																																																																																																																																					7
AATTAG/AATTCT	1																																																																																																																																																								1
AATTAT/AATTAT	35	13	1	1																																																																																																																																																					50
ACACAT/ATGTGT	10	4	1	1																																																																																																																																																					16
ACACTC/AGTGTG	1																																																																																																																																																								1
ACAGAT/ATCTGT	1																																																																																																																																																								1
ACATAT/ATATGT	57	8	6	1	2	1																																																																																																																																																			75
ACATGG/ATGTCC	1																																																																																																																																																								1
ACATGT/ACATGT	1																																																																																																																																																								1
ACCACT/AGTGGT	3																																																																																																																																																								3
ACCAGC/CTGGTG	7	3		1																																																																																																																																																					11
ACCATC/ATGGTG	4																																																																																																																																																								4
ACCTCC/AGGTGG	2																																																																																																																																																								2
ACGATG/ATCGTC	5	5			1																																																																																																																																																				11
ACTATG/AGTCAT	2	1																																																																																																																																																							3
ACTCAG/AGTCTG	1	1																																																																																																																																																							2
AGAGAT/ATCTCT	6																																																																																																																																																								6
AGATAT/ATATCT	13				1							1																																																																																																																																													15
AGCATC/ATGCTG		1																																																																																																																																																							1
AGCATG/ATGCTC	1																																																																																																																																																								1
AGGATG/ATCCTC	1	2																																																																																																																																																							3
AGGCGG/CCGCCT	2																																																																																																																																																								2
ATATGC/ATATGC	2																																																																																																																																																								2
ATCATG/ATCATG	3	1																																																																																																																																																							4
ATCCCC/ATGGGG	1																																																																																																																																																								1
