Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_001861065.1/fasta/hub_GCA_001861065.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2025
Total size of examined sequences (bp):           37201405
Total number of identified SSRs:                 111243
Number of SSR containing sequences:              1931
Number of sequences containing more than 1 SSR:  1876
Number of SSRs present in compound formation:    48014


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	17923
2	62679
3	10384
4	8635
5	8115
6	3507

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	169	170	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1046	952	914	806	744	621	603	597	506	391	366	274	229	159	142	163	134	119	86	54	36	26	11	13	11	14	7	6	3	4	1	2	2	1	1	1	1	1	2		1	2	1								1	1												1	1																																										1																			1		1																					1			9061
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1049	970	912	801	726	677	578	545	473	405	330	243	168	149	158	140	125	109	85	45	51	35	18	14	10	6	7	5	4	2	3	1	1		2	2	1		3		1					1								1							1																																		1															1						1													1																						1	8862
AC	-	-	-	39	21	13	5	4		1																																																																																																																																																															83
AG	-	-	-	5	4	3	1			3	1																																																																																																																																																														17
AT	-	-	-	6060	3920	3219	2908	2683	2595	2491	2343	2207	1987	1686	1365	1250	964	807	615	491	320	211	153	118	71	47	29	18	8	7	2	3	2	1	1	1	1	1																																																																																																																																			38585
CA	-	-	-	51	2	1	4	1	3	1																																																																																																																																																															63
CT	-	-	-	4	3			1																																																																																																																																																																	8
GA	-	-	-	6	4	2	2	1																																																																																																																																																																	15
GC	-	-	-	3																																																																																																																																																																					3
GT	-	-	-	27	11	6	1	1	2																																																																																																																																																																48
TA	-	-	-	4884	3073	2161	1830	1695	1614	1304	1287	1124	1071	851	677	573	472	331	229	177	123	85	65	31	15	9	11	5	3	1	1		1	2	2	1		1																																																																																																																																			23709
TC	-	-	-	10	16	5	2	1			1																																																																																																																																																														35
TG	-	-	-	72	13	14	5	3	3	2			1																																																																																																																																																												113
AAC	-	-	43	24	5	8	4	8	4			2	1	1																																																																																																																																																											100
AAG	-	-	28	11	8		5	1			1														1																																																																																																																																																55
AAT	-	-	611	394	278	218	156	84	50	26	20	8	7	8	7		4	1																																																																																																																																																							1872
ACA	-	-	18	4	5	2	4	1	1																																1																																																																																																																																36
ACC	-	-	3		1																																																																																																																																																																				4
ACG	-	-	3																																																																																																																																																																						3
ACT	-	-	7	6	7			1	1																																																																																																																																																																22
AGA	-	-	13	7	4	3		1	1																																																																																																																																																																29
AGT	-	-	8	4																																																																																																																																																																					12
ATA	-	-	649	352	222	151	97	89	42	27	24	14	7	6	13		2	3	2	1	2	1																																																																																																																																																			1704
ATC	-	-	70	33	12	7	6	2	2	1																																																																																																																																																															133
ATG	-	-	76	16	12	4	6	2				1			2																																																																																																																																																										119
ATT	-	-	497	313	195	146	97	58	41	31	15	10	4	13	6	1		1	1			1																																																																																																																																																			1430
CAA	-	-	11	5	4	4	2		2		1								1																																																																																																																																																						30
CAC	-	-			1																																																																																																																																																																				1
CAT	-	-	29	5	6	2	3		2						1																																																																																																																																																										48
CCA	-	-	5	1		1																																																																																																																																																																			7
CTA	-	-	5	6	1	4																																																																																																																																																																			16
CTC	-	-				1																																																																																																																																																																			1
CTT	-	-	10	6	3	2		1																																																																																																																																																																	22
GAA	-	-	57	24	8	7	5		1		2																																																																																																																																																														104
GAC	-	-	2	2																																																																																																																																																																					4
GAG	-	-	4		1																																																																																																																																																																				5
GAT	-	-	43	24	10	7	1	1		3	1																																																																																																																																																														90
GGT	-	-	3	3																																																																																																																																																																					6
GTA	-	-	23	4	1		1																																																																																																																																																																		29
GTC	-	-		1																																																																																																																																																																					1
GTT	-	-	5	4		3	1	1	4			1																																																																																																																																																													19
TAA	-	-	303	170	138	86	67	53	32	15	9	8	2	2	4	2									1																																																																																																																																																892
TAC	-	-	47	15	6	2	2	1	5	1																																																																																																																																																															79
TAG	-	-	27	11	6	4	4		2				2																																																																																																																																																												56
TAT	-	-	626	336	290	146	134	91	41	22	20	15	7	2		1														1																																																																																																																																											1732
TCA	-	-	63	20	9	2	7	1	1			1				1											1							1	1																																																																																																																																						108
TCC	-	-	10	6	1																																																																																																																																																																				17
TCG	-	-	2	1																																																																																																																																																																					3
TCT	-	-	40	6	4	9	1	3																																																																																																																																																																	63
TGA	-	-	20	12	4	3		1																																																																																																																																																																	40
TGG	-	-	3																																																																																																																																																																						3
TGT	-	-	14	3	9	3	2	3	1	3						1	4	1																																																																																																																																																							44
TTA	-	-	519	228	144	133	93	47	49	17	24	10	9	8	4	2	1		1	2		1									1									1																																																																																																																																	1294
TTC	-	-	46	20	5	4	3	2	1					1	2	1																																																																																																																																																									85
TTG	-	-	24	10	12	8	2	2	2	1	1	2														1													1																																																																																																																																		66
AAAC	-	18	7	3	5			1						1			1																												1																																																																																																																												37
AAAG	-	19	9	4	1																																																																																																																																																																				33
AAAT	-	597	364	201	75	51	25	8	6	1	1	1	1																																																																																																																																																												1331
AACA	-	4	1																					1																																																																																																																																																	6
AAGA	-	16	1	2																																																																																																																																																																					19
AAGC	-	1																																																																																																																																																																							1
AAGT	-	3																																																																																																																																																																							3
AATA	-	456	276	137	66	30	21	8	3	4		1																																																																																																																																																													1002
AATC	-	2	1		1																																																																																																																																																																				4
AATG	-	7	2	2																																																																																																																																																																					11
AATT	-	7	3	1																																																																																																																																																																					11
ACAA	-	1		1		1																																																																																																																																																																			3
ACAT	-	34	21	10	13	2	2	1	3									1						1																						1			1																																																																																																																								90
AGAA	-	6	2	1	1				1																																																																																																																																																																11
AGAT	-	3	1																																																																																																																																																																						4
AGTA	-	3																																																																																																																																																																							3
ATAA	-	616	262	125	60	36	19	4	1	1	1	1					1																																																																																																																																																								1127
ATAC	-	74	43	26	7	3	2	6	5	1	2									1	1				1			1																						1																																																																																																																							174
ATAG	-	1	1																																																																																																																																																																						2
ATCT	-	2																																																																																																																																																																							2
ATGA	-	3																																																																																																																																																																							3
ATGC	-	2																																																																																																																																																																							2
ATGG	-	3																																																																																																																																																																							3
ATGT	-	18	6	1		3	3	2			1		1						1				1				1																																																																																																																																														38
ATTA	-	9		2																																																																																																																																																																					11
ATTC	-	4	6	4	2																																																																																																																																																																				16
ATTT	-	333	203	95	50	23	10		2	2	1																																																																																																																																																														719
CAAA	-	3	2		3																																																																																																																																																																				8
CAAT	-		1	1				2																																																																																																																																																																	4
CATA	-	24	9	3		1	1						1																																																																																																																																																												39
CATC	-			1																																																																																																																																																																					1
CCTT	-																1																																																																																																																																																								1
CTTA	-	2		1																																																																																																																																																																					3
CTTT	-		3	3																																																																																																																																																																					6
GAAA	-	14	4	2	1							1																																																																																																																																																													22
GAAT	-	1			1																																																																																																																																																																				2
GATA	-			1																																																																																																																																																																					1
GCTA	-	1																																																																																																																																																																							1
GTAT	-	34	8	4	7	7	1				3							3	1	1					1			1																										1																																																																																																																			72
GTTT	-	4	2				1																																																																																																																																																																		7
TAAA	-	224	91	39	24	8	7	1	1																																																																																																																																																																395
TAAC	-	1																																																																																																																																																																							1
TAAT	-	14	5	1																																																																																																																																																																					20
TACA	-	17	17	8	2	2					1							2	1	1										1	1																		2																																																																																																																							1	56
TAGA	-	1																																																																																																																																																																							1
TAGT	-	1																																																																																																																																																																							1
TATC	-	5																																																																																																																																																																							5
TATG	-	101	27	17	5	4	3		3	4	3							1		1	2	1								1		1																1																																																																																																																									175
TATT	-	697	329	153	71	32	28	10	2	4	1																																																																																																																																																														1327
TCCT	-	1					1																																																																																																																																																																		2
TCTA	-	1																																																																																																																																																																							1
TCTT	-	3		3	1																																																																																																																																																																				7
TGAA	-	1																																																																																																																																																																							1
TGCA	-	1																																																																																																																																																																							1
TGTA	-	24	22	3	4	2		1	1						1																																																																																																																																																										58
TGTT	-	5	1																																																																																																																																																																						6
TTAA	-	4	4		1																																																																																																																																																																				9
TTAG	-	1																																																																																																																																																																							1
TTAT	-	397	197	106	53	24	11	3	3	1																																																																																																																																																															795
TTCA	-		1	2																																																																																																																																																																					3
TTCC	-	3	1					1																																																																																																																																																																	5
TTCT	-	3	2	4	2				1																																																																																																																																																																12
TTGC	-	1																																																																																																																																																																							1
TTGT	-	2	1	1	1													1																																																																																																																																																							6
TTTA	-	429	158	92	63	37	15	4	2	2	3																																																																																																																																																														805
TTTC	-	48	13	5	2	1	3	2		1												1			1																																																																																																																																																77
TTTG	-	17	4	2	3	4	1																																																																																																																																																																		31
AAAAC	42	15	5	1	1	1																																																																																																																																																																			65
AAAAG	87	18	5	3																																																																																																																																																																					113
AAAAT	669	237	90	28	12	2			1																																																																																																																																																																1039
AAACA	12	1	2																																																																																																																																																																						15
AAAGA	11	6	1	1																																																																																																																																																																					19
AAAGC	2																																																																																																																																																																								2
AAAGG	5																																																																																																																																																																								5
AAATA	236	89	41	16	1			1																																																																																																																																																																	384
AAATC	3	1			1																																																																																																																																																																				5
AAATG	15		1																																																																																																																																																																						16
AAATT	13	6		1																																																																																																																																																																					20
AACAA	4	3			1		1																																																																																																																																																																		9
AACAC	1																																																																																																																																																																								1
AACAG	1																																																																																																																																																																								1
AACAT	1	2		1			1																																																																																																																																																																		5
AACCA						1																																																																																																																																																																			1
AAGAA	25	5	6	3																																																																																																																																																																					39
AAGGA	1																																																																																																																																																																								1
AATAA	246	53	17	5	1		1	1																																																																																																																																																																	324
AATAC	10	9	1																																																																																																																																																																						20
AATAG	3	1																																																																																																																																																																							4
AATAT	144	34	15	5	1	5	1	1		4	1		2	1	2		1					1																																																																																																																																																			218
AATGA	1	1																																																																																																																																																																							2
AATGG	4	3																																																																																																																																																																							7
AATTA	4	3																																																																																																																																																																							7
AATTC		3																																																																																																																																																																							3
AATTG	8	2																																																																																																																																																																							10
AATTT	8																																																																																																																																																																								8
ACAAA	11		1																																																																																																																																																																						12
ACAAT			1																																																																																																																																																																						1
AGAAA	10	3																																																																																																																																																																							13
AGAAC	1																																																																																																																																																																								1
AGAAG	2																																																																																																																																																																								2
AGAAT	6																																																																																																																																																																								6
AGGAA	4	2																																																																																																																																																																							6
AGGGA	1																																																																																																																																																																								1
AGTAT	1																																																																																																																																																																								1
ATAAA	178	36	11	2	1		1		1	1				1																																																																																																																																																											232
ATAAC	1																																																																																																																																																																								1
ATAAG	1		1																																																																																																																																																																						2
ATAAT	107	21	25	5	2	1		1	2							1												1																																																																																																																																													166
ATACA	2	1																																																																																																																																																																							3
ATACT	1																																																																																																																																																																								1
ATAGA	2																																																																																																																																																																								2
ATATA	560	95	25	13	5	5	3	1	3	3		1	1	3			1										1		2							1																																																																																																																																					723
ATATC	4	3																																																																																																																																																																							7
ATATG	5	3																																																																																																																																																																							8
ATATT	84	25	3	3	4	1	1				2	1			1																																																																																																																																																										125
ATCAA	3																																																																																																																																																																								3
ATCAT		2		1																																																																																																																																																																					3
ATCTA	2																																																																																																																																																																								2
ATCTT	2																																																																																																																																																																								2
ATGAA	3	1	2		1																																																																																																																																																																				7
ATGAG	1																																																																																																																																																																								1
ATGAT	1																																																																																																																																																																								1
ATGGA		1																																																																																																																																																																							1
ATGTG	1																																																																																																																																																																								1
ATTAA	6	6																																																																																																																																																																							12
ATTAT	63	19	5	4	1	2		1							1										3																																																																																																																																																99
ATTCC	7	3	9	6	5	3	5	2	1	3	1	1		1	1																																																																																																																																																										48
ATTCT	1																																																																																																																																																																								1
ATTGT		3																																																																																																																																																																							3
ATTTA	21	8	3																																																																																																																																																																						32
ATTTC	20	4																																																																																																																																																																							24
ATTTG	1																																																																																																																																																																								1
ATTTT	150	50	28	5	1	1																																																																																																																																																																			235
CAAAA	5	1	2		1																																																																																																																																																																				9
CAAAT	2		1																																																																																																																																																																						3
CAAGA		1																																																																																																																																																																							1
CAATA		1																																																																																																																																																																							1
CAATT	1																																																																																																																																																																								1
CACCA	3																																																																																																																																																																								3
CATAA	9																																																																																																																																																																								9
CATAT	3			1																																																																																																																																																																					4
CATCA	7																																																																																																																																																																								7
CATTA	2																																																																																																																																																																								2
CATTC	18	11	1	3	2			1		2																																																																																																																																																															38
CATTT	5																																																																																																																																																																								5
CCACA	6																																																																																																																																																																								6
CCATT	3		1							1																																																																																																																																																															5
CCTTC	2																																																																																																																																																																								2
CTATT		1																																																																																																																																																																							1
CTTAA	1																																																																																																																																																																								1
CTTAT				1																																																																																																																																																																					1
CTTTA	1																																																																																																																																																																								1
CTTTC	3																																																																																																																																																																								3
CTTTT	20	4		1																																																																																																																																																																					25
GAAAA	68	17	2	3	1																																																																																																																																																																				91
GAAAG	3	1																																																																																																																																																																							4
GAAAT	9	1																																																																																																																																																																							10
GAATG	9	1	1																																																																																																																																																																						11
GAATT		1																																																																																																																																																																							1
GATAT	1	1	1																																																																																																																																																																						3
GATTT	1																																																																																																																																																																								1
GGAAA		1																																																																																																																																																																							1
GGAAT	1		1																																																																																																																																																																						2
GTATA	1																																																																																																																																																																								1
GTATT		1																																																																																																																																																																							1
GTGGT	4																																																																																																																																																																								4
GTGTT	1																																																																																																																																																																								1
GTTTT	1		1					1																																																																																																																																																																	3
TAAAA	148	38	20	3	1	1	1	1																																																																																																																																																																	213
TAAAG	2																																																																																																																																																																								2
TAAAT	20	1	1																																																																																																																																																																						22
TAAGT		2																																																																																																																																																																							2
TAATA	55	10	4	1	2	1			1						1			1			1																1																																																																																																																																				78
TAATG	1																																																																																																																																																																								1
TAATT	5	2																																																																																																																																																																							7
TACAT	1																																																																																																																																																																								1
TATAA	67	22	9	2	1	1		1	1																																																																																																																																																																104
TATAG	1																																																																																																																																																																								1
TATAT	531	62	26	6	1	5	4	2		3	1	2		1	1	1											1	1	2																																																																																																																																												650
TATCA	1			1																																																																																																																																																																					2
TATCT	2																																																																																																																																																																								2
TATGT	10																																																																																																																																																																								10
TATTA	93	46	16	6	5	6	1	3	1	1			2	1	1				1				1																																																																																																																																																		184
TATTC	5																																																																																																																																																																								5
TATTG	2	7	1																																																																																																																																																																						10
TATTT	188	58	40	6	2	2		1				1																																																																																																																																																													298
TCAAA	4																																																																																																																																																																								4
TCAAT					1																																																																																																																																																																				1
TCATA		1	1																																																																																																																																																																						2
TCATT	2																																																																																																																																																																								2
TCCAT	2	3				1			1																																																																																																																																																																7
TCTCT	1																																																																																																																																																																								1
TCTGT	1																																																																																																																																																																								1
TCTTC	1																																																																																																																																																																								1
TCTTT	10	1																																																																																																																																																																							11
TGAAA	2	2																																																																																																																																																																							4
TGAAT	1	1																																																																																																																																																																							2
TGATG	18																																																																																																																																																																								18
TGGAA	1																																																																																																																																																																								1
TGTAT	2	1																																																																																																																																																																							3
TGTGT	1																																																																																																																																																																								1
TGTTA	1			2				2																																																																																																																																																																	5
TGTTC	1																																																																																																																																																																								1
TGTTT	10	2			2																																																																																																																																																																				14
TTAAA	6	2	1																																																																																																																																																																						9
TTAAT	21	3		1																																																																																																																																																																					25
TTATA	103	36	7	2	2		3		1	1																			1																																																																																																																																												156
TTATC	1																																																																																																																																																																								1
TTATT	305	113	41	15	3	1	1			1																																																																																																																																																															480
TTCAT	3																																																																																																																																																																								3
TTCCA	12	9	6	5	3		1				1		1																																																																																																																																																												38
TTCTA	1			1																																																																																																																																																																					2
TTCTT	23	3	1	1																																																																																																																																																																					28
TTGGC	1																																																																																																																																																																								1
TTGTA	2																																																																																																																																																																								2
TTGTT	5	2																																																				1																																																																																																																			8
TTTAA	12	6	1																																																																																																																																																																						19
TTTAT	280	93	32	9	1										2																						1																																																																																																																																				418
TTTCA	7	4																																																																																																																																																																							11
TTTCC	4	3			1																																																																																																																																																																				8
TTTCT	30	7	3		1				1																																																																																																																																																																42
TTTGA	1	1		1																																																																																																																																																																					3
TTTGC	2																																																																																																																																																																								2
TTTGT	9	4	1		2																																																																																																																																																																				16
TTTTA	354	148	45	16	7	1	1	2	1	1																																																																																																																																																															576
TTTTC	121	23	12	3																																																																																																																																																																					159
TTTTG	26	11	4		1			1																																																																																																																																																																	43
AAAAAC	9	8	1	1																																																																																																																																																																					19
AAAAAG	47	11	1	3																																																																																																																																																																					62
AAAAAT	151	30	3																																																																																																																																																																						184
AAAACA	4	2		1																																																																																																																																																																					7
AAAAGA	23	5	1	2	1																																																																																																																																																																				32
AAAAGG	2				1																																																																																																																																																																				3
AAAATA	57	12	3	1																																																																																																																																																																					73
AAAATC	2																																																																																																																																																																								2
AAAATG	7	4																																																																																																																																																																							11
AAAATT	6	5																																																																																																																																																																							11
AAACAA	2	1																																																																																																																																																																							3
AAACAT	3	2																																																																																																																																																																							5
AAAGAA	19	4																																																																																																																																																																							23
AAAGAC		3																																																																																																																																																																							3
AAAGAG	1	1																																																																																																																																																																							2
AAAGAT	3																																																																																																																																																																								3
AAAGGA		2	2																																																																																																																																																																						4
AAAGGT	1																																																																																																																																																																								1
AAATAA	40	5		3	1	1																																																																																																																																																																			50
AAATAC	1	3	2																																																																																																																																																																						6
AAATAG	1				1																																																																																																																																																																				2
AAATAT	69	19	5																																																																																																																																																																						93
AAATCA	2																																																																																																																																																																								2
AAATGA	1	2	1																																																																																																																																																																						4
AAATGC	1																																																																																																																																																																								1
AAATGG	3	1																																																																																																																																																																							4
AAATGT	4	3																																																																																																																																																																							7
AAATTA	5																																																																																																																																																																								5
AAATTT	2																																																																																																																																																																								2
AACAAA	3	2																																																																																																																																																																							5
AACAAG		1																																																																																																																																																																							1
AACAAT	4	1	3																																																																																																																																																																						8
AACACA	1																																																																																																																																																																								1
AACATA	1	1																																																																																																																																																																							2
AACCAG	1																																																																																																																																																																								1
AAGAAA	20	8		1																																																																																																																																																																					29
AAGAGG		1																																																																																																																																																																							1
AAGCAC	1																																																																																																																																																																								1
AAGGAA	1																																																																																																																																																																								1
AAGGAC	1																																																																																																																																																																								1
AATAAA	28	4	1	1																																																																																																																																																																					34
AATAAC	7	4																																																																																																																																																																							11
AATAAG	1																																																																																																																																																																								1
AATAGT	3	1																																																																																																																																																																							4
AATATA	47	14	4																																																																																																																																																																						65
AATATT	7																																																																																																																																																																								7
AATCAC	1																																																																																																																																																																								1
AATGAA	1	2																																																																																																																																																																							3
AATGAT	2																																																																																																																																																																								2
AATGGA			1																																																																																																																																																																						1
AATGTC			2																																																																																																																																																																						2
AATGTG	2																																																																																																																																																																								2
AATGTT		2																																																																																																																																																																							2
AATTAA	3																																																																																																																																																																								3
AATTAC		1																																																																																																																																																																							1
AATTAT	7	2	2																																																																																																																																																																						11
AATTCT	1																																																																																																																																																																								1
AATTTA	1																																																																																																																																																																								1
AATTTC	1																																																																																																																																																																								1
AATTTT	4																																																																																																																																																																								4
ACAAAA	5	1																																																																																																																																																																							6
ACAAAC	3	1																																																																																																																																																																							4
ACAAAG	1																																																																																																																																																																								1
ACAAAT		1	1			1																																																																																																																																																																			3
ACAAGA	2																																																																																																																																																																								2
ACAATA	2																																																																																																																																																																								2
ACACAT		1																																																																																																																																																																							1
ACATAA	3	1																																																																																																																																																																							4
ACATAT	8	2	1	1	1																																																																																																																																																																				13
ACATTA	1																																																																																																																																																																								1
ACATTG			1																																																																																																																																																																						1
ACCACA	2																																																																																																																																																																								2
ACTAAC		3																																																																																																																																																																							3
ACTATT	5	1																																																																																																																																																																							6
ACTCCA	2																																																																																																																																																																								2
AGAAAA	5	2	1							1																																																																																																																																																															9
AGAAGG	2																																																																																																																																																																								2
AGAATA		1																																																																																																																																																																							1
AGAATT	1																																																																																																																																																																								1
AGAGAA	1																																																																																																																																																																								1
AGAGAT	2																																																																																																																																																																								2
AGATAA	5	2																																																																																																																																																																							7
AGATAT							1																																																																																																																																																																		1
AGGAAA	3																																																																																																																																																																								3
AGGTAA	1																																																																																																																																																																								1
AGGTTC			1																																																																																																																																																																						1
AGTAAT	1																																																																																																																																																																								1
AGTATT	1																																																																																																																																																																								1
AGTTGC	1																																																																																																																																																																								1
ATAAAA	24	3																																																																																																																																																																							27
ATAAAC	10	4	2	2																																																																																																																																																																					18
ATAAAG	1		1																																																																																																																																																																						2
ATAAAT	128	41	8	1	1	1																																																																																																																																																																			180
ATAAGA	2																																																																																																																																																																								2
ATAATC	1		2																																																																																																																																																																						3
ATAATG	9																																																																																																																																																																								9
ATAATT	17																																																																																																																																																																								17
ATACAC		1																																																																																																																																																																							1
ATACAT	5	1																																																																																																																																																																							6
ATAGAT																			1																																																																																																																																																						1
ATAGGA	1																																																																																																																																																																								1
ATAGTA	4	2																																																																																																																																																																							6
ATAGTT	1																																																																																																																																																																								1
ATATAA	144	13	7			1		1																																																																																																																																																																	166
ATATAC	15	2																																																																																																																																																																							17
ATATAG	3																																																																																																																																																																								3
ATATGA	2																																																																																																																																																																								2
ATATGC	2																																																																																																																																																																								2
ATATGT	8	3			1																																																																																																																																																																				12
ATATTA	1																																																																																																																																																																								1
ATATTC	4																																																																																																																																																																								4
ATATTG	1																																																																																																																																																																								1
ATATTT	34	8	1			1																																																																																																																																																																			44
ATCAAC	2	1	1																																																																																																																																																																						4
ATCAGC	1																																																																																																																																																																								1
ATCATG		1																																																																																																																																																																							1
ATCATT	6	3	2																																																																																																																																																																						11
ATCGTC		1																																																																																																																																																																							1
ATCTAT	1																																																																																																																																																																								1
ATCTTC	2																																																																																																																																																																								2
ATCTTT	2																																																																																																																																																																								2
ATGAAA	2																																																																																																																																																																								2
ATGAAC	1																																																																																																																																																																								1
ATGAAG	1																																																																																																																																																																								1
ATGATA	12	2	1		1	1																																																																																																																																																																			17
ATGATC	2																																																																																																																																																																								2
ATGATT	1																																																																																																																																																																								1
ATGTAA	1		1																																																																																																																																																																						2
ATGTAT	2	3																																																																																																																																																																							5
ATGTCC	1																																																																																																																																																																								1
ATGTGG			1																																																																																																																																																																						1
ATGTTC	2	2			1																																																																																																																																																																				5
ATGTTT		2		1																																																																																																																																																																					3
ATTAAA	2																																																																																																																																																																								2
ATTAAT	10																																																																																																																																																																								10
ATTACA	1																																																																																																																																																																								1
ATTACC		1																																																																																																																																																																							1
ATTACT	2				1																																																																																																																																																																				3
ATTAGC	1																																																																																																																																																																								1
ATTATA	11	2																																																																																																																																																																							13
ATTATC	13	2																																																																																																																																																																							15
ATTATG		1																																																																																																																																																																							1
ATTCCT	1																																																																																																																																																																								1
ATTGTG	1																																																																																																																																																																								1
ATTGTT	1	1			3																																																																																																																																																																				5
ATTTAA	2	1																																																																																																																																																																							3
ATTTAC	9		1		1																																																																																																																																																																				11
ATTTAT	33	11	2																																																																																																																																																																						46
ATTTGC	4																																																																																																																																																																								4
ATTTTA	6	1																																																																																																																																																																							7
ATTTTC	3	6		1																																																																																																																																																																					10
ATTTTG	1																																																																																																																																																																								1
ATTTTT	35	6	1																																																																																																																																																																						42
CAAAAA	3		1																																																																																																																																																																						4
CAACAC	4																																																																																																																																																																								4
CAACAG	1																																																																																																																																																																								1
CAAGAA	1																																																																																																																																																																								1
CAATAA			1				1																																																																																																																																																																		2
CAATGA		1																																																																																																																																																																							1
CACTAC	4																																																																																																																																																																								4
CATAAA	4																																																																																																																																																																								4
CATATA	1	2																																																																																																																																																																							3
CATCAA		1																																																																																																																																																																							1
CATCAC	2																																																																																																																																																																								2
CATCCC	1																																																																																																																																																																								1
CATCGT		1																																																																																																																																																																							1
CATCTA	1																																																																																																																																																																								1
CATGAA	1																																																																																																																																																																								1
CATGAG	1																																																																																																																																																																								1
CATTAA	1																																																																																																																																																																								1
CATTAT	2	1																																																																																																																																																																							3
CATTCA	1																																																																																																																																																																								1
CATTTA	1																																																																																																																																																																								1
CATTTC	2																																								1																																																																																																																																3
CATTTG	1																																																																																																																																																																								1
CATTTT			1																																																																																																																																																																						1
CCATTA	3																																																																																																																																																																								3
CCATTC	1																																																																																																																																																																								1
CCATTT	2	1																																																																																																																																																																							3
CCTAAA	32	2																																																																																																																																																																							34
CCTCAA	2																																																																																																																																																																								2
CCTTAT	1																																																																																																																																																																								1
CCTTCC		2																																																																																																																																																																							2
CCTTTT										1																																																																																																																																																															1
CGCCTC	2																																																																																																																																																																								2
CGTTTC	2																																																																																																																																																																								2
CTACCA	1	2																																																																																																																																																																							3
CTCTTC	1																																																																																																																																																																								1
CTTACT	1																																																																																																																																																																								1
CTTATT	3																																																																																																																																																																								3
CTTCAC	2																																																																																																																																																																								2
CTTCAT	1																																																																																																																																																																								1
CTTCCT	1																																																																																																																																																																								1
CTTCTC	2																																																																																																																																																																								2
CTTCTG	1																																																																																																																																																																								1
CTTGAG	1																																																																																																																																																																								1
CTTTTA		1																																																																																																																																																																							1
CTTTTC	5	2																																																																																																																																																																							7
CTTTTT	17	4	2																																																																																																																																																																						23
GAAAAA	23	4	2																																																																																																																																																																						29
GAAAAG	7	1		1																																																																																																																																																																					9
GAAAAT	7	2		2																																																																																																																																																																					11
GAAAGA	3																																																																																																																																																																								3
GAAATA			1																																																																																																																																																																						1
GAAATG			1																																											1													2																																																																																																														4
GAAATT	1																																																																																																																																																																								1
GAACAT	1																																																																																																																																																																								1
GAACCT			1																																																																																																																																																																						1
GAAGAC	1																																																																																																																																																																								1
GAAGAG	1																																																																																																																																																																								1
GAAGAT	2																																																																																																																																																																								2
GAAGGA	1																																																																																																																																																																								1
GAAGGG		2																																																																																																																																																																							2
GAATAA	1																																																																																																																																																																								1
GAATAT			1																																																																																																																																																																						1
GACAAA		1																																																																																																																																																																							1
GACGAA	2																																																																																																																																																																								2
GACTCA				1																																																																																																																																																																					1
GAGAAA	1																																																																																																																																																																								1
GAGAAG	2																																																																																																																																																																								2
GAGATG	1	1																																																																																																																																																																							2
GAGGAA		1																																																																																																																																																																							1
GAGGAT	1																																																																																																																																																																								1
GATAAA	4																																																																																																																																																																								4
GATAAC	1																																																																																																																																																																								1
GATAAG	1																																																																																																																																																																								1
GATAAT	2																																																																																																																																																																								2
GATAGA	2																																																																																																																																																																								2
GATATA	1																																																																																																																																																																								1
GATCTT		1																																																																																																																																																																							1
GATGAA	3	1																																																																																																																																																																							4
GATGAC	2	1																																																																																																																																																																							3
GATGGG	2																																																																																																																																																																								2
GATGTT	1																																																																																																																																																																								1
GATTCA	1																																																																																																																																																																								1
GCATCA									1																																																																																																																																																																1
GCTTGA		1																																																																																																																																																																							1
GGAAAA	2	1																																																																																																																																																																							3
GGAAAG	1																																																																																																																																																																								1
GGAAAT				1																																																																																																																																																																					1
GGAGGC	1																																																																																																																																																																								1
GGTCTT	1																																																																																																																																																																								1
GGTTTA	20	1																																																																																																																																																																							21
GTAAAA	1																																																																																																																																																																								1
GTAAAT		2																																																																																																																																																																							2
GTAATA	2		1																																																																																																																																																																						3
GTAGTG		1																																																																																																																																																																							1
GTATAT	2																																																																																																																																																																								2
GTATTG	1																																																																																																																																																																								1
GTCTTC	2																																																																																																																																																																								2
GTTAAA	1																																																																																																																																																																								1
GTTATC		1																																																																																																																																																																							1
GTTCTT	1																																																																																																																																																																								1
GTTTAT	1	1		1																																																																																																																																																																					3
GTTTTT		1																																																																																																																																																																							1
TAAAAA	25	11																																																																																																																																																																							36
TAAAAT	7	2	1																																																																																																																																																																						10
TAAACA	1	2																																																																																																																																																																							3
TAAACC	1																																																																																																																																																																								1
TAAAGA	1																																																																																																																																																																								1
TAAAGG	1																																																																																																																																																																								1
TAAATA	27	14	1																																																																																																																																																																						42
TAAATG	3	1																																																																																																																																																																							4
TAAATT	1																																																																																																																																																																								1
TAACAA	1																																																																																																																																																																								1
TAACTA	1																																																																																																																																																																								1
TAATAC	2																																																																																																																																																																								2
TAATAG	7	3																																																																																																																																																																							10
TAATGA	7	1																																																																																																																																																																							8
TAATGT	1																																																																																																																																																																								1
TAATTA	6	1	1																																																																																																																																																																						8
TAATTG		1	1																																																																																																																																																																						2
TAATTT	2																																																																																																																																																																								2
TACACA	1																																																																																																																																																																								1
TACATA	3																																																																																																																																																																								3
TACCAC		1																																																																																																																																																																							1
TACTAT	6	3																																																																																																																																																																							9
TACTTC	1																																																																																																																																																																								1
TAGTAA	4	3																																																																																																																																																																							7
TAGTTC	1																																																																																																																																																																								1
TATAAA	31	6	1																																																																																																																																																																						38
TATAAT	10	2																																																																																																																																																																							12
TATACA	1	2																																																																																																																																																																							3
TATATC	4																																																																																																																																																																								4
TATATG	5	3			1																																																																																																																																																																				9
TATATT	109	28	2	1	1																																																																																																																																																																				141
TATCAT	5	2																																																																																																																																																																							7
TATCTA	1																																																																																																																																																																								1
TATCTT	5		2																																																																																																																																																																						7
TATGTA	7	1																																																																																																																																																																							8
TATGTG			1																																																																																																																																																																						1
TATGTT	3		6							1																																																																																																																																																															10
TATTAA	7	1																																																																																																																																																																							8
TATTAC	15	6	1																																																																																																																																																																						22
TATTGT	1	3																																																																																																																																																																							4
TATTTA	91	28	3																																																																																																																																																																						122
TATTTC	4																																																																																																																																																																								4
TATTTG	3	2																																																																																																																																																																							5
TATTTT	53	12	4																																																																																																																																																																						69
TCAAAA	3																																																																																																																																																																								3
TCAAGC		2																																																																																																																																																																							2
TCACCT	1																																																																																																																																																																								1
TCATAA		1																																																																																																																																																																							1
TCATAT	1																																																																																																																																																																								1
TCATTA	7																																																																																																																																																																								7
TCATTG	1																																																																																																																																																																								1
TCATTT	3	3																																																																																																																																																																							6
TCCTCT	2																																																																																																																																																																								2
TCCTTC	2																																																																																																																																																																								2
TCCTTT	1	1																																																																																																																																																																							2
TCTATA	1																																																																																																																																																																								1
TCTCCT	1																																																																																																																																																																								1
TCTCTT	3	1																																																																																																																																																																							4
TCTGAG				1																																																																																																																																																																					1
TCTGGT		2																																																																																																																																																																							2
TCTGTA	1																																																																																																																																																																								1
TCTTAT	1																																																																																																																																																																								1
TCTTCA	4	2																																																																																																																																																																							6
TCTTCC		1	1																																																																																																																																																																						2
TCTTGA	1																																																																																																																																																																								1
TCTTGT		1																																																																																																																																																																							1
TCTTTA	8		1																																																																																																																																																																						9
TCTTTC	10	1	2	1																																																																																																																																																																					14
TCTTTT	8	2																																																																																																																																																																							10
TGAAAA	1	2																																																																																																																																																																							3
TGAAAT														1																																																																																																																																																											1
TGAACA		1																																																																																																																																																																							1
TGAATC	1																																																																																																																																																																								1
TGACGT	1																																																																																																																																																																								1
TGAGGT	2																																																																																																																																																																								2
TGATAA	1	1	1																																																																																																																																																																						3
TGATGG	3																																																																																																																																																																								3
TGATGT			2																																																																																																																																																																						2
TGATTT	1																																																																																																																																																																								1
TGCTCT		1		1																																																																																																																																																																					2
TGTAAA		2																																																																																																																																																																							2
TGTATA	3	3																																																																																																																																																																							6
TGTATG	1																																																																																																																																																																								1
TGTATT	2																																																																																																																																																																								2
TGTGAG	1																																																																																																																																																																								1
TGTGTA	2		1																																																																																																																																																																						3
TGTGTT	5																																																																																																																																																																								5
TGTTCA	1				2																																																																																																																																																																				3
TGTTGA	1																																																																																																																																																																								1
TGTTTA	1		2																																																																																																																																																																						3
TGTTTG	1	1																																																																																																																																																																							2
TGTTTT	1																																																																																																																																																																								1
TTAAAA	1	1																																																																																																																																																																							2
TTAAAT	2																																																																																																																																																																								2
TTAATA	3																																																																																																																																																																								3
TTAATG	4																																																																																																																																																																								4
TTACAT	3																																																																																																																																																																								3
TTACTA		1																																																																																																																																																																							1
TTACTT		1																																																																																																																																																																							1
TTAGGG	2																																																																																																																																																																								2
TTAGGT	1																																																																																																																																																																								1
TTATAT	30	6	1			1																																																																																																																																																																			38
TTATCA	2																																																																																																																																																																								2
TTATCC	2	3																																																																																																																																																																							5
TTATCT	9																																																																																																																																																																								9
TTATGA	1																																																																																																																																																																								1
TTATGT	1																																																																																																																																																																								1
TTATTC	4																																																																																																																																																																								4
TTATTG	4	7	1																																																																																																																																																																						12
TTATTT	34	8	1																																																																																																																																																																						43
TTCATC	5																																																																																																																																																																								5
TTCATG	2																																																																																																																																																																								2
TTCATT	1																																																																																																																																																																								1
TTCCTT	1																																																																																																																																																																								1
TTCGTC	1																																																																																																																																																																								1
TTCGTT	1																																																																																																																																																																								1
TTCTCC	1																																																																																																																																																																								1
TTCTGA		1																																																																																																																																																																							1
TTCTTA	4																																																																																																																																																																								4
TTCTTT	12	4																																																																																																																																																																							16
TTGACC		1																																																																																																																																																																							1
TTGATG	1																																																																																																																																																																								1
TTGTAA			1																																																																																																																																																																						1
TTGTCC	1																																																																																																																																																																								1
TTGTTA	2	1																																																																																																																																																																							3
TTGTTC	1	1																																																																																																																																																																							2
TTGTTT		2																																																																																																																																																																							2
TTTAAA	1																																																																																																																																																																								1
TTTAAT	7																																																																																																																																																																								7
TTTAGG	3																																																																																																																																																																								3
TTTATA	82	3	4		1	1																																																																																																																																																																			91
TTTATC	2	1																																																																																																																																																																							3
TTTATG	11	4	1																																																																																																																																																																						16
TTTATT	53	7		1																																																																																																																																																																					61
TTTCAT	3		1																																																																																																																																																																						4
TTTCCC	1																																																																																																																																																																								1
TTTCCT	3																																																																																																																																																																								3
TTTCTA	6	1																																																																																																																																																																							7
TTTCTC		2																																																																																																																																																																							2
TTTCTG	1																																																																																																																																																																								1
TTTCTT	13	8			1																																																																																																																																																																				22
TTTGTA	3	1																																																																																																																																																																							4
TTTGTG	2		2																																																																																																																																																																						4
TTTGTT	3																																																																																																																																																																								3
TTTTAA	7	2																																																																																																																																																																							9
TTTTAC	5																																																																																																																																																																								5
TTTTAT	53	7	2																																																																																																																																																																						62
TTTTCA	4	3	1																																																																																																																																																																						8
TTTTCC	2	3	1																																																																																																																																																																						6
TTTTCT	20	4																																																																																																																																																																							24
TTTTGA	2																																																																																																																																																																								2
TTTTGT	7	1				1																																																																																																																																																																			9
TTTTTA	89	32	5	4																																																																																																																																																																					130
TTTTTC	63	22	4	2																																																																																																																																																																					91
TTTTTG	7	1	1		1																																																																																																																																																																				10

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	169	170	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2095	1922	1826	1607	1470	1298	1181	1142	979	796	696	517	397	308	300	303	259	228	171	99	87	61	29	27	21	20	14	11	7	6	4	3	3	1	3	3	2	1	5		2	2	1			1					1	1		1							1			1	1																														1												1			1						1										1		1	1																				1		1	17923
AC/GT	-	-	-	189	47	34	15	9	8	4			1																																																																																																																																																												307
AG/CT	-	-	-	25	27	10	5	3		3	2																																																																																																																																																														75
AT/AT	-	-	-	10944	6993	5380	4738	4378	4209	3795	3630	3331	3058	2537	2042	1823	1436	1138	844	668	443	296	218	149	86	56	40	23	11	8	3	3	3	3	3	2	1	2																																																																																																																																			62294
CG/CG	-	-	-	3																																																																																																																																																																					3
AAC/GTT	-	-	115	50	35	28	15	15	14	4	2	5	1	1		1	4	1	1							1													1		1																																																																																																																																295
AAG/CTT	-	-	194	74	32	25	14	8	3		3			1	2	1									1																																																																																																																																																358
AAT/ATT	-	-	3205	1793	1267	880	644	422	255	138	112	65	36	39	34	6	7	5	4	3	2	3			1					1	1									1																																																																																																																																	8924
ACC/GGT	-	-	14	4	2	1																																																																																																																																																																			21
ACG/CGT	-	-	7	4																																																																																																																																																																					11
ACT/AGT	-	-	117	46	21	10	7	2	8	1			2																																																																																																																																																												214
AGG/CCT	-	-	14	6	2	1																																																																																																																																																																			23
ATC/ATG	-	-	301	110	53	25	23	7	5	4	1	2			3	1											1							1	1																																																																																																																																						538
AAAC/GTTT	-	54	18	7	12	5	2	1						1			1	1						1																					1																																																																																																																												104
AAAG/CTTT	-	109	34	24	8	1	3	2	2	1		1										1			1																																																																																																																																																187
AAAT/ATTT	-	3749	1880	948	462	241	136	38	20	15	7	3	1				1																																																																																																																																																								7501
AACT/AGTT	-	3																																																																																																																																																																							3
AAGC/CTTG	-	2																																																																																																																																																																							2
AAGG/CCTT	-	4	1				1	1									1																																																																																																																																																								8
AAGT/ACTT	-	8		1																																																																																																																																																																					9
AATC/ATTG	-	2	2	1	1			2																																																																																																																																																																	8
AATG/ATTC	-	16	9	8	3																																																																																																																																																																				36
AATT/AATT	-	34	12	4	1																																																																																																																																																																				51
ACAT/ATGT	-	326	153	72	38	24	12	10	12	5	10		2		1			7	3	4	3	1	1	1	2		1	2		2	1	1														1		1	3	1				1																																																																																																																		1	702
AGAT/ATCT	-	13	2	1																																																																																																																																																																					16
AGCT/AGCT	-	1																																																																																																																																																																							1
ATCC/ATGG	-	3		1																																																																																																																																																																					4
ATGC/ATGC	-	3																																																																																																																																																																							3
AAAAC/GTTTT	125	39	16	1	8	1	1	2																																														1																																																																																																																			194
AAAAG/CTTTT	405	87	30	15	2				1																																																																																																																																																																540
AAAAT/ATTTT	2754	915	365	105	30	8	5	6	3	3		1		1	2																						1																																																																																																																																				4199
AAACC/GGTTT						1																																																																																																																																																																			1
AAAGC/CTTTG	4																																																																																																																																																																								4
AAAGG/CCTTT	20	7			1																																																																																																																																																																				28
AAAGT/ACTTT	3																																																																																																																																																																								3
AAATC/ATTTG	15	2	1	1	1																																																																																																																																																																				20
AAATG/ATTTC	67	13	3		1																																																																																																																																																																				84
AAATT/AATTT	116	37	6	2																																																																																																																																																																					161
AACAC/GTGTT	3																																																																																																																																																																								3
AACAG/CTGTT	4																																																																																																																																																																								4
AACAT/ATGTT	22	2		3			1	2																																																																																																																																																																	30
AACTT/AAGTT	1	2																																																																																																																																																																							3
AAGAC/CTTGT		1																																																																																																																																																																							1
AAGAG/CTCTT	4																																																																																																																																																																								4
AAGAT/ATCTT	6		1	1																																																																																																																																																																					8
AAGCC/CTTGG	1																																																																																																																																																																								1
AAGGG/CCCTT	3																																																																																																																																																																								3
AATAC/ATTGT	18	23	3																																																																																																																																																																						44
AATAG/ATTCT	18	2		1																																																																																																																																																																					21
AATAT/ATATT	1807	370	135	47	24	27	13	10	9	12	4	4	5	6	7	2	2	1	1		1	1	1		3		2	2	5							1	1																																																																																																																																				2503
AATCT/AGATT	2																																																																																																																																																																								2
AATGG/ATTCC	57	31	19	14	10	4	6	3	2	6	2	1	1	1	1																																																																																																																																																										158
AATGT/ACATT	4																																																																																																																																																																								4
AATTC/AATTG	10	7			1																																																																																																																																																																				18
ACACC/GGTGT	13																																																																																																																																																																								13
ACATC/ATGTG	26																																																																																																																																																																								26
ACTAT/AGTAT	4																																																																																																																																																																								4
AGATG/ATCTC	1																																																																																																																																																																								1
ATATC/ATATG	15	10	2	3																																																																																																																																																																					30
AAAAAC/GTTTTT	44	19	3	2	1	1																																																																																																																																																																			70
AAAAAG/CTTTTT	270	78	11	8	2					1																																																																																																																																																															370
AAAAAT/ATTTTT	642	137	20	10	1	1																																																																																																																																																																			811
AAAACG/CGTTTT	1																																																																																																																																																																								1
AAAAGG/CCTTTT	27	10	3	1	1					1																																																																																																																																																															43
AAAAGT/ACTTTT	6	2																																																																																																																																																																							8
AAAATC/ATTTTG	11																																																																																																																																																																								11
AAAATG/ATTTTC	33	24	4	3																																																																																																																																																																					64
AAAATT/AATTTT	50	11	1																																																																																																																																																																						62
AAACAC/GTGTTT	12	2	2																																																																																																																																																																						16
AAACAG/CTGTTT	1																																																																																																																																																																								1
AAACAT/ATGTTT	39	17	11	4						1																																																																																																																																																															72
AAACCT/AGGTTT	57	3																																																																																																																																																																							60
AAACGG/CCGTTT	2																																																																																																																																																																								2
AAAGAC/CTTTGT	1	4																																																																																																																																																																							5
AAAGAG/CTCTTT	19	5	2	1																																																																																																																																																																					27
AAAGAT/ATCTTT	40	3	4																																																																																																																																																																						47
AAAGGG/CCCTTT	2																																																																																																																																																																								2
AAAGGT/ACCTTT	3																																																																																																																																																																								3
AAAGTT/AACTTT	1																																																																																																																																																																								1
AAATAC/ATTTGT	9	7	3			1																																																																																																																																																																			20
AAATAG/ATTTCT	11	1	1		1																																																																																																																																																																				14
AAATAT/ATATTT	825	191	39	2	3	5		1																																																																																																																																																																	1066
AAATGC/ATTTGC	6																																																																																																																																																																								6
AAATGG/ATTTCC	7	2	2	1																																					1					1													2																																																																																																														16
AAATGT/ACATTT	21	8	2		1																																																																																																																																																																				32
AAATTG/AATTTC	2													1																																																																																																																																																											3
AAATTT/AAATTT	9	1																																																																																																																																																																							10
AACAAG/CTTGTT	5	3																																																																																																																																																																							8
AACAAT/ATTGTT	22	17	5		3		1																																																																																																																																																																		48
AACACC/GGTGTT	4																																																																																																																																																																								4
AACACT/AGTGTT		3																																																																																																																																																																							3
AACAGC/CTGTTG	1																																																																																																																																																																								1
AACATC/ATGTTG	5	2	3																																																																																																																																																																						10
AACATG/ATGTTC	8	3			3																																																																																																																																																																				14
AACATT/AATGTT	7	2																																																																																																																																																																							9
AACCAC/GGTTGT	2																																																																																																																																																																								2
AACCAG/CTGGTT	1	2																																																																																																																																																																							3
AACCCT/AGGGTT	2																																																																																																																																																																								2
AACCTC/AGGTTG	4																																																																																																																																																																								4
AACCTG/AGGTTC			2																																																																																																																																																																						2
AACGAT/ATCGTT	1	1																																																																																																																																																																							2
AACGTC/ACGTTG	1																																																																																																																																																																								1
AACTAG/AGTTCT	1																																																																																																																																																																								1
AACTAT/AGTTAT	2																																																																																																																																																																								2
AACTCC/AGTTGG	2																																																																																																																																																																								2
AACTGC/AGTTGC	1																																																																																																																																																																								1
AAGAAT/ATTCTT	16	1																																																																																																																																																																							17
AAGACC/CTTGGT	1																																																																																																																																																																								1
AAGACG/CGTCTT	6																																																																																																																																																																								6
AAGAGC/CTCTTG		1		1																																																																																																																																																																					2
AAGAGG/CCTCTT	5	3	1																																																																																																																																																																						9
AAGAGT/ACTCTT	1																																																																																																																																																																								1
AAGATC/ATCTTG	1	1																																																																																																																																																																							2
AAGATG/ATCTTC	18	3																																																																																																																																																																							21
AAGCAC/CTTGTG	1																																																																																																																																																																								1
AAGCAG/CTGCTT	1																																																																																																																																																																								1
AAGCTC/AGCTTG	1	3																																																																																																																																																																							4
AAGGAC/CCTTGT	2																																																																																																																																																																								2
AAGGAG/CCTTCT	11																																																																																																																																																																								11
AAGGAT/ATCCTT	4	3																																																																																																																																																																							7
AAGGGG/CCCCTT		4																																																																																																																																																																							4
AAGGTC/ACCTTG		1																																																																																																																																																																							1
AAGGTG/ACCTTC	3																																																																																																																																																																								3
AAGTAG/ACTTCT	1																																																																																																																																																																								1
AATACC/ATTGGT	1																																																																																																																																																																								1
AATACT/AGTATT	3																																																																																																																																																																								3
AATAGG/ATTCCT	2																																																																																																																																																																								2
AATAGT/ACTATT	49	20	2		1																																																																																																																																																																				72
AATATC/ATATTG	1																																																																																																																																																																								1
AATATG/ATATTC	7		1																																																																																																																																																																						8
AATATT/AATATT	28	1																																																																																																																																																																							29
AATCAC/ATTGTG	2																																																																																																																																																																								2
AATCAG/ATTCTG		1																																																																																																																																																																							1
AATCAT/ATGATT	3	2	2																																																																																																																																																																						7
AATCTG/AGATTC	2																																																																																																																																																																								2
AATGAC/ATTGTC	1	1																																																																																																																																																																							2
AATGAT/ATCATT	68	12	4		1	1																																																																																																																																																																			86
AATGCT/AGCATT	1																																																																																																																																																																								1
AATGGG/ATTCCC	1																																																																																																																																																																								1
AATGGT/ACCATT	3	1																																																																																																																																																																							4
AATGTC/ACATTG			3																																																																																																																																																																						3
AATGTG/ACATTC	3																																																																																																																																																																								3
AATTAC/AATTGT	1	2	2																																																																																																																																																																						5
AATTAG/AATTCT	2																																																																																																																																																																								2
AATTAT/AATTAT	51	7	3																																																																																																																																																																						61
ACACAT/ATGTGT	4	2	2																																																																																																																																																																						8
ACACTC/AGTGTG	1																																																																																																																																																																								1
ACAGAT/ATCTGT	1																																																																																																																																																																								1
ACATAT/ATATGT	60	22	1	1	3																																																																																																																																																																				87
ACATCC/ATGTGG			1																																																																																																																																																																						1
ACATCT/AGATGT	1																																																																																																																																																																								1
ACATGG/ATGTCC	1																																																																																																																																																																								1
ACCACT/AGTGGT	5	4																																																																																																																																																																							9
ACCATC/ATGGTG	5																																																																																																																																																																								5
ACGATG/ATCGTC	2	3																																																																																																																																																																							5
ACTCAG/AGTCTG				2																																																																																																																																																																					2
AGAGAT/ATCTCT	4																																																																																																																																																																								4
AGATAT/ATATCT	11						1												1																																																																																																																																																						13
AGATGG/ATCTCC	1	1																																																																																																																																																																							2
AGCATC/ATGCTG	1								1																																																																																																																																																																2
AGCATG/ATGCTC	1																																																																																																																																																																								1
AGGATG/ATCCTC	1																																																																																																																																																																								1
AGGCGG/CCGCCT	3																																																																																																																																																																								3
ATATGC/ATATGC	2																																																																																																																																																																								2
ATCATG/ATCATG	2	1																																																																																																																																																																							3
ATCCCC/ATGGGG	3																																																																																																																																																																								3
