Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_001861055.1/fasta/hub_GCA_001861055.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              3143
Total size of examined sequences (bp):           35516674
Total number of identified SSRs:                 108004
Number of SSR containing sequences:              2900
Number of sequences containing more than 1 SSR:  2773
Number of SSRs present in compound formation:    46752


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	17643
2	62493
3	8682
4	8115
5	7814
6	3257

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1076	943	843	803	726	639	561	540	511	398	306	267	194	166	134	126	116	94	67	56	38	25	16	14	12	8	6	5	5	4	4	4			3	2	2	1			1	1	1		1		1															1																															1							1		8723
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1108	966	865	825	728	669	633	538	483	409	311	216	184	162	150	134	131	109	70	78	30	17	20	21	11	10	6	3	4	7	3	3	3	1	1	1							1	1				1		1				1				1		1			1													1																									1	8920
AC	-	-	-	38	30	6	5	4	1	1																																																																																																													85
AG	-	-	-	15	7	2	1				1																																																																																																												26
AT	-	-	-	6952	4375	3406	2884	2786	2561	2380	2020	1832	1636	1464	1175	1011	813	661	549	429	323	264	146	118	78	48	24	19	12	7	7	2	1		2	1	4	1																																																																																	37991
CA	-	-	-	68	13	4	1		2	1																																																																																																													89
CT	-	-	-	2	2		1	1																																																																																																															6
GA	-	-	-	7		3	1																																																																																																																11
GC	-	-	-	2																																																																																																																			2
GT	-	-	-	20	13	1	4	2																																																																																																															40
TA	-	-	-	5176	3444	2493	1907	1750	1560	1326	1100	998	877	754	638	500	451	298	263	186	116	79	51	43	28	21	11	6	5		2		1																																																																																						24084
TC	-	-	-	8	5	1				2	1																																																																																																												17
TG	-	-	-	103	17	14	5	2		1																																																																																																													142
AAC	-	-	17	15	11	4	2	2	2			1	1					1				1																																																																																																	57
AAG	-	-	24	7	6	2	3	1				1									1																																																																																																		45
AAT	-	-	502	307	208	159	103	84	49	31	16	12	8	5	2	2		3		2		1																																																																																																	1494
ACA	-	-	6	2	1	2		1	1																																																																																																														13
ACC	-	-	7																																																																																																																				7
ACT	-	-	15	10	1	1		1																																																																																																															28
AGA	-	-	10	7		1		2																																																																																																															20
AGG	-	-	1	1	1																																																																																																																		3
AGT	-	-	6	11	1	1	1									1																																																																																																							21
ATA	-	-	527	283	167	115	99	62	37	29	21	5	6	4	4	3		4	1			1																																																																																																	1368
ATC	-	-	64	33	6	4	3											1																																																																																																					111
ATG	-	-	59	18	11		5	1											1																																																																																																				95
ATT	-	-	453	246	171	140	89	63	41	24	13	7	5	1	1		2		3			1																																																																																																	1260
CAA	-	-	5	7		1	1	1	1																																																																																																														16
CAC	-	-	2		1																																																																																																																		3
CAT	-	-	20	11	4	2	2	2																																																																																																															41
CCA	-	-	4																																																																																																																				4
CGT	-	-	1																																																																																																																				1
CTA	-	-	6	11		1																																																																																																																	18
CTC	-	-			1																																																																																																																		1
CTT	-	-	6	9	2		2	1																																																																																																															20
GAA	-	-	38	12	5	9	5	2	1			1																																																																																																											73
GAC	-	-	2	1																																																																																																																			3
GAG	-	-			2																																																																																																																		2
GAT	-	-	45	24	10	2	2		1																																																																																																														84
GGT	-	-	1																																																																																																																				1
GTA	-	-	24	10	5	3																																																																																																																	42
GTC	-	-	2																																																																																																																				2
GTG	-	-	5	1																																																																																																																			6
GTT	-	-	6	7	1	2	1		2						1																																																																																																								20
TAA	-	-	243	117	113	76	51	37	22	12	6	1	4	3		1		2				1				1																																																																																													690
TAC	-	-	48	24	3	3		2				2			1																																																																																																								83
TAG	-	-	15	10	2	6		1				1								1																																																																																																			36
TAT	-	-	546	292	239	159	123	67	43	25	21	3	8	4		1	2	2		1																																																																																																			1536
TCA	-	-	37	15	12	4	1	1	1			1																																																																																																											72
TCC	-	-	7	3	2	1																																																																																																																	13
TCT	-	-	31	6	9	2	4	6	5			1																																																																																																											64
TGA	-	-	27	9	4	3	2			1																																																																																																													46
TGG	-	-	1			1																																																																																																																	2
TGT	-	-	11	5	4	5	2		2	1		1		1		2										1																																																																																													35
TTA	-	-	405	197	144	111	62	66	40	25	19	4	5	6	4	1		1	1	1		1																																																																																																	1093
TTC	-	-	42	20	10	2	1	2	3																																																																																																														80
TTG	-	-	32	11	8	1	6	4	3	1	4			2	1																																																																																																								73
AAAC	-	23		6	3					1		1																							1																																																																																				35
AAAG	-	20	7	2	4	2		1	1																																																																																																														37
AAAT	-	546	330	191	87	53	25	17			3			1																																																																																																									1253
AACA	-	2																																																																																																																					2
AAGA	-	27	2	1	1						1																																																																																																												32
AAGG	-			1																																																																																																																			1
AATA	-	348	256	128	55	30	12	15	4																																																																																																														848
AATC	-			1																																																																																																																			1
AATG	-	3	1		1			1																																																																																																															6
AATT	-	12	3	2																																																																																																																			17
ACAA	-	1	2			3																																																																																																																	6
ACAT	-	45	13	5	6		2	1		1	1			1						1																																																																																																			76
ACTT	-	1																																																																																																																					1
AGAA	-	4	2	1					2																																																																																																														9
AGAT	-	1																																																																																																																					1
AGTA	-	2																																																																																																																					2
ATAA	-	592	255	120	75	28	9	8				1					2													1																																																																																									1091
ATAC	-	91	30	13	7	10	8	2	3	3		1		1	1																																																																																																								170
ATAG	-	3																																																																																																																					3
ATGA	-	5																																																																																																																					5
ATGC	-	3																																																																																																																					3
ATGT	-	27	8	6	2				1										1																																								1																																																												46
ATTA	-	9	3	1																																																																																																																			13
ATTC	-	3	1	3	2									3																																																																																																									12
ATTG	-			2																																																																																																																			2
ATTT	-	284	164	72	43	17	12	2	4		2																																																																																																												600
CAAA	-	2	3	1	1																																																																																																																		7
CAAT	-			1	1																																																																																																																		2
CATA	-	17	3	5		1			1			1				1																																																																																																							29
CTTA	-	1					1																																																																																																																2
CTTC	-	1																																																																																																																					1
CTTT	-	1	3																																																																																																																				4
GAAA	-	14	4	2	1				2		1																																																																																																												24
GAAT	-	2	2	1	1																																																																																																																		6
GATA	-	4																																																																																																																					4
GCTA	-	2																																																																																																																					2
GGAT	-		1																																																																																																																				1
GTAT	-	34	11	7	3				1	1					1														1																																						3																																																				62
GTTT	-	4																																																																																																																					4
TAAA	-	238	122	39	20	8	1	1	3																																																																																																														432
TAAC	-	1																																																																																																																					1
TAAT	-	11	2																																																																																																																				13
TACA	-	27	21	12	5					1																						1																1	1																																																																						69
TAGC	-	1																																																																																																																					1
TATC	-	5		1																																																																																																																			6
TATG	-	73	36	23	17	3	3		1	2	3	1				1			1						1			1	1																															1																																																											168
TATT	-	694	292	135	73	44	10	4	5	1	3																																																																																																												1261
TCAT	-	1	1																																																																																																																				2
TCTA	-	2	1																																																																																																																				3
TCTT	-	4	1	1	1			1																																																																																																															8
TGAA	-	1	1																																																																																																																				2
TGAT	-		2																																																																																																																				2
TGTA	-	26	11	5	4	1			1		1			1	1																1	1																																																																																							53
TGTT	-	6	3																																																																																																																				9
TTAA	-	12	3		1																																																																																																																		16
TTAG	-	1																																																																																																																					1
TTAT	-	350	205	79	46	20	10	2			1																																																																																																												713
TTCA	-	1																																																																																																																					1
TTCC	-	1																																																																																																																					1
TTCT	-	11	3	3					2																																																																																																														19
TTGA	-	1	1																																																																																																																				2
TTGC	-	1																																																																																																																					1
TTGT	-	3																																																																																																																					3
TTTA	-	395	183	114	63	34	24	11	1	1																																																																																																													826
TTTC	-	30	7	7	2		2																																																																																																																48
TTTG	-	22	9	2	1																																																																																																																		34
AAAAC	47	7	3	1	1																																																																																																																		59
AAAAG	87	23	10	2																																																																																																																			122
AAAAT	607	229	111	31	11	6	2	1		1		1																																																																																																											1000
AAACA	10	1		1																																																																																																																			12
AAAGA	15	5	3	1																																																																																																																			24
AAAGC	1	1																																																																																																																					2
AAAGG	4										1																																																																																																												5
AAATA	213	66	25	7	1			1	1																																																																																																														314
AAATC	1		1	2																																																																																																																			4
AAATG	14	2	1	1																																																																																																																			18
AAATT	19	6	3	2																																																																																																																			30
AACAA	4	4		1																																																																																																																			9
AACAC			3																																																																																																																				3
AACAG	2																																																																																																																						2
AACAT	3	1	1																																																																																																																				5
AACTT	2																																																																																																																						2
AAGAA	14	3	2	1																																																																																																																			20
AAGAG	1																																																																																																																						1
AAGAT	2																																																																																																																						2
AAGGA	1																																																																																																																						1
AAGGG			1																																																																																																																				1
AATAA	197	64	15	7	1																																																																																																																		284
AATAC	8	2	1			1																																																																																																																	12
AATAG	4	2	2																																																																																																																				8
AATAT	142	38	16	6	6	3	2		2	1	2	1											1																																																																																																220
AATGA	1	1																																																																																																																					2
AATGG	2																																																																																																																						2
AATTA	18	1																																																																																																																					19
AATTC	2	1	1																																																																																																																				4
AATTG	1	3																																																																																																																					4
AATTT	8		1																																																																																																																				9
ACAAA	7		1																																																																																																																				8
ACAAC	1																																																																																																																						1
ACAAT	1																																																																																																																						1
ACATG	1																																																																																																																						1
AGAAA	20	5	1	1																																																																																																																			27
AGAAC	1																																																																																																																						1
AGAAT	2																																																																																																																						2
AGGGA	1																																																																																																																						1
AGTAA	1																																																																																																																						1
AGTAT	1																																																																																																																						1
ATAAA	133	33	9	5																																																																																																																			180
ATAAC	1																																																																																																																						1
ATAAG	1																																																																																																																						1
ATAAT	87	22	10	2	3		1	1	1	1	2																																																																																																												130
ATACA	1																																																																																																																						1
ATACT	1																																																																																																																						1
ATAGA	1																																																																																																																						1
ATATA	617	80	25	9	5	4	3	1	5		2	2	1			1							1	1																																																																																															757
ATATC	4	1																																																																																																																					5
ATATG	4	2																																																																																																																					6
ATATT	95	39	5	3	1	1		3	1						1																																																																																																								149
ATCAA			1																																																																																																																				1
ATCAT	1	1	2																																																																																																																				4
ATCTC	1																																																																																																																						1
ATCTT	1																																																																																																																						1
ATGAA	3	1																																																																																																																					4
ATGAT	1																																																																																																																						1
ATTAA	4	1	6																																																																																																																				11
ATTAG	1																																																																																																																						1
ATTAT	84	23	8	3	2				3						1								1																																																																																																125
ATTCT	4																																																																																																																						4
ATTGT		1																																																																																																																					1
ATTTA	25	5		1																																																																																																																			31
ATTTC	20	7	3																																																																																																																				30
ATTTG	3	1	2	1		1																																																																																																																	8
ATTTT	165	48	20	12	1																																																																																																																		246
CAAAA	3																																																																																																																						3
CAAAT	1																																																																																																																						1
CAATA		1																																																																																																																					1
CACAT	1																																																																																																																						1
CATAA	16																																																																																																																						16
CATAT	2																																																																																																																						2
CATCA	11																																																																																																																						11
CATTT	2				1																																																																																																																		3
CCTAA	1																																																																																																																						1
CCTTC			1																																																																																																																				1
CCTTT	2	1																																																																																																																					3
CTTTC	6	1		2																																																																																																																			9
CTTTT	22	10		2																																																																																																																			34
GAAAA	84	12	3	1																																																																																																																			100
GAAAG	2			1					1									1																																																																																																					5
GAAAT	6																																																																																																																						6
GAAGA	1																																																																																																																						1
GAATA	1																																																																																																																						1
GAATG	4	2																																																																																																																					6
GATAT	3		2																																																																																																																				5
GATTT	2																																																																																																																						2
GCCAA	1																																																																																																																						1
GCTTT	1																																																																																																																						1
GGAAA		1																																																																																																																					1
GGAAT	2	1																																																																																																																					3
GTATA	1																																																																																																																						1
GTATT	1																																																																																																																						1
GTTCA	1																																																																																																																						1
GTTTG		1																																																																																																																					1
GTTTT	3		1																																																																																																																				4
TAAAA	94	36	20		3	1																																																																																																																	154
TAAAG	1																																																																																																																						1
TAAAT	18	2																																																																																																																					20
TAATA	52	13	7	6	1																																																																																																																		79
TAATG	5																																																																																																																						5
TAATT	7	2	1																																																																																																																				10
TACAT	2																																																																																																																						2
TATAA	82	18	3	1	1	1						2								1																																																																																																			109
TATAC	1																																																																																																																						1
TATAT	484	88	20	9	2	3	2	3	1		3		1		1	1											1																																																																																												619
TATCA		1																																																																																																																					1
TATCT	1	2																																																																																																																					3
TATGT	8			2																																																																																																																			10
TATTA	131	39	13	13	4	1	5	2		2	3	1	2																																																																																																										216
TATTC	4																																																																																																																						4
TATTG	4	4												1																																																																																																									9
TATTT	178	65	36	8	2	3	2																																																																																																																294
TCAAA	1																																																																																																																						1
TCAAT				1																																																																																																																			1
TCATA	1	3																																																																																																																					4
TCCAT	1																																																																																																																						1
TCTGT	1																																																																																																																						1
TCTTT	8		1	2																																																																																																																			11
TGAAA	2	1																																																																																																																					3
TGAAG		1																																																																																																																					1
TGAAT			2																																																																																																																				2
TGATA	1																																																																																																																						1
TGATG	20																																																																																																																						20
TGATT	2																																																																																																																						2
TGGAA	1			1																																																																																																																			2
TGTAT	2	1				1																																																																																																																	4
TGTGT		1																																																																																																																					1
TGTTC	2																																																																																																																						2
TGTTG	1																																																																																																																						1
TGTTT	13	3			1																																																																																																																		17
TTAAA	5	1	2																																																																																																																				8
TTAAT	19	1																																																																																																																					20
TTATA	106	29	7	2	2	1	1				1	1				2						1																																																																																																	153
TTATG	1																																																																																																																						1
TTATT	303	77	43	17	6			2	1	1																																																																																																													450
TTCAC		2																																																																																																																					2
TTCAT	4																																																																																																																						4
TTCCT	3	1	1		1					1																																																																																																													7
TTCTA	1																																																																																																																						1
TTCTT	12	9		1																																																																																																																			22
TTGAT	1			1																																																																																																																			2
TTGTA	2	3																																																																																																																					5
TTGTC	1																																																																																																																						1
TTGTT	7	4	3																																																																																																																				14
TTTAA	9	5	2																																																																																																																				16
TTTAT	281	99	29	7			1		1																																																																																																														418
TTTCA	3	3																																																																																																																					6
TTTCC	8	4											1																																																																																																										13
TTTCT	30	8	3																																																																																																																				41
TTTGA	5		2																																																																																																																				7
TTTGT	9	4				1																																																																																																																	14
TTTTA	405	140	52	13	5	3					4				1		1																																																																																																						624
TTTTC	119	27	16	4																																																																																																																			166
TTTTG	20	10	5	1																																																																																																																			36
AAAAAC	9	3	1		1																																																																																																																		14
AAAAAG	54	13	6																																																																																																																				73
AAAAAT	129	28	4				1		1																																																																																																														163
AAAACA	9	1	3		1																																																																																																																		14
AAAAGA	17	9	2	1																																																																																																																			29
AAAAGG	2		1																																																																																																																				3
AAAAGT	1																																																																																																																						1
AAAATA	69	18			2																																																																																																																		89
AAAATC	2	1																																																																																																																					3
AAAATG	4	2	1																																																																																																																				7
AAAATT	11	1	1																																																																																																																				13
AAACAA		4	1																																																																																																																				5
AAACAC		4																																																																																																																					4
AAACAT	2	1		1																																																																																																																			4
AAAGAA	15	3																																																																																																																					18
AAAGAG	1	1																																																																																																																					2
AAAGAT	6	1																																																																																																																					7
AAAGGA	2	1	1		1																																																																																																																		5
AAAGGG	3																																																																																																																						3
AAAGGT	1																																																																																																																						1
AAATAA	27	4																																																																																																																					31
AAATAC	1	1	1																																																																																																																				3
AAATAG		1																																																																																																																					1
AAATAT	61	16	8	1				1																																																																																																															87
AAATCA	1																																																																																																																						1
AAATCT	1																																																																																																																						1
AAATGA	3	1																																																																																																																					4
AAATGG	3																																																																																																																						3
AAATGT	4																																																																																																																						4
AAATTA	3																																																																																																																						3
AAATTT	1																																																																																																																						1
AACAAA	2																																																																																																																						2
AACAAT	3	1																																																																																																																					4
AACAGA	1																																																																																																																						1
AACATA	1																																																																																																																						1
AACCAT	1																																																																																																																						1
AACTAT	1																																																																																																																						1
AACTTT	1																																																																																																																						1
AAGAAA	15	9																																																																																																																					24
AAGAAT	2																																																																																																																						2
AAGAGG	1																																																																																																																						1
AAGATG	1																																																																																																																						1
AAGGAA				1																																																																																																																			1
AAGGAT	2																																																																																																																						2
AAGGTC		1																																																																																																																					1
AATAAA	18	5																																																																																																																					23
AATAAC	5	2		1																																																																																																																			8
AATAAG	4																																																																																																																						4
AATAGT	5	1					1																																																																																																																7
AATATA	47	2	1																																																																																																																				50
AATATT	4																																																																																																																						4
AATCAG		2																																																																																																																					2
AATGAA	2	2																																																																																																																					4
AATGAT	8					1																																																																																																																	9
AATGGA	1																																																																																																																						1
AATGGT	2		1																																																																																																																				3
AATGTA	3	2																																																																																																																					5
AATTAA	3																																																																																																																						3
AATTAC	1																																																																																																																						1
AATTAT	5		1																																																																																																																				6
AATTTA	1																																																																																																																						1
AATTTC		1																																																																																																																					1
AATTTT	1		1																																																																																																																				2
ACAAAA	2																																																																																																																						2
ACAAAC	2																																																																																																																						2
ACAAAG	1																																																																																																																						1
ACAAAT	4	2																																																																																																																					6
ACAAGA	2																																																																																																																						2
ACAATA	3		1																																																																																																																				4
ACACAT		1		1																																																																																																																			2
ACAGAT	1																																																																																																																						1
ACATAA	2																																																																																																																						2
ACATAC	1																																																																																																																						1
ACATAT	4			1																																																																																																																			5
ACATGT	1																																																																																																																						1
ACATTA	1																																																																																																																						1
ACATTG		1																																																																																																																					1
ACATTT	1																																																																																																																						1
ACCAGC	2																																																																																																																						2
ACCCAC	2																																																																																																																						2
ACGATG		1																																																																																																																					1
ACTAAC		1																																																																																																																					1
ACTATT	4																																																																																																																						4
AGAAAA	5	4	2																																																																																																																				11
AGAAAC	2																																																																																																																						2
AGAAGG		1																																																																																																																					1
AGAATA		1																																																																																																																					1
AGAATT	2																																																																																																																						2
AGAGAA	1																																																																																																																						1
AGAGAT	1																																																																																																																						1
AGATAA	3																																																																																																																						3
AGATAT	1																																																																																																																						1
AGGAAA	3																																																																																																																						3
AGGAAG	1	2																																																																																																																					3
AGGAGA	1																																																																																																																						1
AGGGTT	1																																																																																																																						1
AGGTTT	1																																																																																																																						1
AGTTGC	1																																																																																																																						1
ATAAAA	29	3	2																																																																																																																				34
ATAAAC	13	4	2	2																																																																																																																			21
ATAAAT	109	38	7	2	2																																																																																																																		158
ATAATC	2																																																																																																																						2
ATAATG	4	2			1																																																																																																																		7
ATAATT	15	1																																																																																																																					16
ATACAC	1																																																																																																																						1
ATACAT	8																																																																																																																						8
ATAGGA	1																																																																																																																						1
ATAGTA	1																																																																																																																						1
ATATAA	176	14	1		1			2																																																																																																															194
ATATAC	12	6																																																																																																																					18
ATATAG	4																																																																																																																						4
ATATGC	3																																																																																																																						3
ATATGT	10	3								1																																																																																																													14
ATATTA	1	1																																																																																																																					2
ATATTC	2	1																																																																																																																					3
ATATTG	1																																																																																																																						1
ATATTT	27	7	2																																																																																																																				36
ATCAAC	1																																																																																																																						1
ATCAGC		1																																																																																																																					1
ATCATA	1																																																																																																																						1
ATCATT	8																																																																																																																						8
ATCGTC	1																																																																																																																						1
ATCTAT	2																																																																																																																						2
ATCTTT	2																																																																																																																						2
ATGAAA			1																																																																																																																				1
ATGAAT		2																																																																																																																					2
ATGATA	7	2					1																																																																																																																10
ATGATC	1																																																																																																																						1
ATGTAA	1																																																																																																																						1
ATGTAT	4	1	1				1																																																																																																																7
ATGTCC	1																																																																																																																						1
ATGTGT	2																																																																																																																						2
ATGTTC	1	1																																																																																																																					2
ATTAAC	2																																																																																																																						2
ATTAAT	1																																																																																																																						1
ATTACA	1		1																																																																																																																				2
ATTAGC						1																																																																																																																	1
ATTATA	11	3																																																																																																																					14
ATTATC	14	2		1																																																																																																																			17
ATTATG		1																																																																																																																					1
ATTGTT		2																																																																																																																					2
ATTTAA	3	1																																																																																																																					4
ATTTAC	5																																																																																																																						5
ATTTAG	3																																																																																																																						3
ATTTAT	28	5	1																																																																																																																				34
ATTTGT			1																																																																																																																				1
ATTTTA	6	2																																																																																																																					8
ATTTTC	12	4	4	1																																																																																																																			21
ATTTTT	50	7	3																																																																																																																				60
CAAAAA	2	1	2																																																																																																																				5
CAAATG	1																																																																																																																						1
CAACAG	1																																																																																																																						1
CAAGAA	1																																																																																																																						1
CAATAA		1	1																																																																																																																				2
CAATGA								1																																																																																																															1
CATAAA	4																																																																																																																						4
CATATA	2	2				1																																																																																																																	5
CATCAA	2																																																																																																																						2
CATCAC	2																																																																																																																						2
CATCCA	1																																																																																																																						1
CATGAA	1																																																																																																																						1
CATTAA	2	1																																																																																																																					3
CATTAT	2	1																																																																																																																					3
CATTCA	1																																																																																																																						1
CATTTA			2																																																																																																																				2
CATTTC	1	1																																																																	1																																																				3
CATTTG	1																																																																																																																						1
CCACCT	1																																																																																																																						1
CCTAAA	32	2																																																																																																																					34
CCTCCA		1																																																																																																																					1
CCTTCC		1																																																																																																																					1
CCTTTA	3																																																																																																																						3
CCTTTC		1																																																																																																																					1
CCTTTT					1																																																																																																																		1
CTAAAC	2																																																																																																																						2
CTACCA	1																																																																																																																						1
CTATTA		1																																																																																																																					1
CTGATG			1																																																																																																																				1
CTTACT	1																																																																																																																						1
CTTTTC	2																																																																																																																						2
CTTTTT	8	2	1																																																																																																																				11
GAAAAA	16	11	3																																																																																																																				30
GAAAAG	4	4																																																																																																																					8
GAAAAT	4	3	1																																																																																																																				8
GAAAGA	1																																																																																																																						1
GAAATA	1																																																																																																																						1
GAACAT	1																																																																																																																						1
GAAGAC	5																																																																																																																						5
GAAGAT	2																																																																																																																						2
GAAGGT	1																																																																																																																						1
GAATAA	1																																																																																																																						1
GAATAT	1	1																																																																																																																					2
GACAAA			1																																																																																																																				1
GACGAA	6																																																																																																																						6
GACTCA		2																																																																																																																					2
GAGAAA	1																																																																																																																						1
GAGGAA		1																																																																																																																					1
GAGGAT	1																																																																																																																						1
GATAAA	1	1																																																																																																																					2
GATAAC	1																																																																																																																						1
GATAAT	1																																																																																																																						1
GATAGA	1																																																																																																																						1
GATATA	2																																																																																																																						2
GATGAA	2	1	1																																																																																																																				4
GATGAC		2																																																																																																																					2
GCATTT	1																																																																																																																						1
GCTTGA		1																																																																																																																					1
GGAAAA	1	1																																																																																																																					2
GGGGGA	1																																																																																																																						1
GGTCTT	2																																																																																																																						2
GGTGAT		1																																																																																																																					1
GGTGCT		2																																																																																																																					2
GGTGTG	1																																																																																																																						1
GGTTTA	20	1																																																																																																																					21
GTAAAA	1																																																																																																																						1
GTAATA	3	1																																																																																																																					4
GTATAT	2																																																																																																																						2
GTATTA	1																																																																																																																						1
GTATTG	1																																																																																																																						1
GTCAAC	1																																																																																																																						1
GTCTTC	1																																																																																																																						1
GTGAAG		2																																																																																																																					2
GTGATG	1																																																																																																																						1
GTGTTG	2																																																																																																																						2
GTTATC		1	1																																																																																																																				2
GTTATT	1																																																																																																																						1
TAAAAA	21	6	4																																																																																																																				31
TAAAAG	1																																																																																																																						1
TAAAAT	3	1																																																																																																																					4
TAAACA	2			2	2																																																																																																																		6
TAAATA	20	2	2	1																																																																																																																			25
TAAATG	1	2																																																																																																																					3
TAACAA	3					1																																																																																																																	4
TAATAC	1																																																																																																																						1
TAATAG	5	1	1																																																																																																																				7
TAATAT	1																																																																																																																						1
TAATCA	1																																																																																																																						1
TAATGA	2	1																																																																																																																					3
TAATGG	1																																																																																																																						1
TAATTA	1	3	1																																																																																																																				5
TAATTG	1		1																																																																																																																				2
TAATTT	1																																																																																																																						1
TACACA		1																																																																																																																					1
TACATA	3		1																																																																																																																				4
TACTAT	3		2																																																																																																																				5
TACTTC	1																																																																																																																						1
TAGAAC		2																																																																																																																					2
TAGATA	2																																																																																																																						2
TAGTAA	2	1	1																																																																																																																				4
TAGTTC		1																																																																																																																					1
TATAAA	27			1																																																																																																																			28
TATAAT	8	3																																																																																																																					11
TATACA	2																																																																																																																						2
TATAGA	1																																																																																																																						1
TATATC	2																	1																																																																																																					3
TATATG	10	3																																																																																																																					13
TATATT	119	23	5																																																																																																																				147
TATCAT	3	1	1																																																																																																																				5
TATCTT	2	1																																																																																																																					3
TATGTA	3		1																																																																																																																				4
TATGTG				1																																																																																																																			1
TATGTT	3								1																																																																																																														4
TATTAA	6																																																																																																																						6
TATTAC	9	5	3		2																																																																																																																		19
TATTGT	1		1																																																																																																																				2
TATTTA	91	15	11																																																																																																																				117
TATTTC	1	1																																																																																																																					2
TATTTG	2																																																																																																																						2
TATTTT	64	13	3																																																																																																																				80
TCAAAA	2																																																																																																																						2
TCAAGA	1																																																																																																																						1
TCAAGC		1																																																																																																																					1
TCACCT	1																																																																																																																						1
TCAGAC	2																																																																																																																						2
TCATAT		1																																																																																																																					1
TCATCG	4																																																																																																																						4
TCATCT		1		1																																																																																																																			2
TCATTA	1																																																																																																																						1
TCATTT	6	2																																																																																																																					8
TCCCCC	2																																																																																																																						2
TCCTCT	4																																																																																																																						4
TCCTTC	1																																																																																																																						1
TCCTTT	1																																																																																																																						1
TCGTCT	10																																																																																																																						10
TCGTGT		1																																																																																																																					1
TCTATA	2																																																																																																																						2
TCTCCT		1																																																																																																																					1
TCTCTA	1																																																																																																																						1
TCTCTT	1		2																																																																																																																				3
TCTTAT	1																																																																																																																						1
TCTTCA	3		1																																																																																																																				4
TCTTCC	3																																																																																																																						3
TCTTGA	1																																																																																																																						1
TCTTTA	3	1																																																																																																																					4
TCTTTC	4	2	2																																																																																																																				8
TCTTTG			1																																																																																																																				1
TCTTTT	10	1																																																																																																																					11
TGAAAA	1																																																																																																																						1
TGAAAT		1																																																																																																																					1
TGAACA	1																																																																																																																						1
TGAAGA		1																																																																																																																					1
TGAATC	1																																																																																																																						1
TGACGA		1																																																																																																																					1
TGATAA	1		1																																																																																																																				2
TGATGG	2																																																																																																																						2
TGATGT			1																																																																																																																				1
TGATTA	1			1			1																																																																																																																3
TGCAAC	1																																																																																																																						1
TGCTCT			1			1																																																																																																																	2
TGTAAA	1																																																																																																																						1
TGTATA	4																																																																																																																						4
TGTATT	1																																																																																																																						1
TGTGAG	1																																																																																																																						1
TGTGTA	1	1																																																																																																																					2
TGTGTT	2																																																																																																																						2
TGTTAT	2																																																																																																																						2
TGTTCA			1																																																																																																																				1
TGTTCT	3																																																																																																																						3
TGTTGA	1																																																																																																																						1
TGTTTA	1	2																																																																																																																					3
TGTTTT	2		1																																																																																																																				3
TTAAAA	3	1																																																																																																																					4
TTAATG	1																																																																																																																						1
TTACTT		2																																																																																																																					2
TTAGGG	1																																																																																																																						1
TTAGGT		1																																																																																																																					1
TTATAA	1																																																																																																																						1
TTATAG	1																																																																																																																						1
TTATAT	20	4	1	1																																																																																																																			26
TTATCA	2																																																																																																																						2
TTATCC	4																																																																																																																						4
TTATCT	6																																																																																																																						6
TTATGT	1																																																																																																																						1
TTATTC	6																																																																																																																						6
TTATTG	7	3	2																																																																																																																				12
TTATTT	31	4	1																																																																																																																				36
TTCATC	1	3																																																																																																																					4
TTCATG		1																																																																																																																					1
TTCATT	2																																																																																																																						2
TTCCTT	1																																																																																																																						1
TTCTAT	1																																																																																																																						1
TTCTCC	2		1																																																																																																																				3
TTCTCT		1																																																																																																																					1
TTCTTA	2	1																																																																																																																					3
TTCTTT	14	2																																																																																																																					16
TTGTAT	1																																																																																																																						1
TTGTCC	1																																																																																																																						1
TTGTTA		1																																																																																																																					1
TTGTTC	1		1																																																																																																																				2
TTGTTT		1																																																																																																																					1
TTTAAT	2	1																																																																																																																					3
TTTAGA	1																																																																																																																						1
TTTAGG	3																																																																																																																						3
TTTATA	135	7		1		1																																																																																																																	144
TTTATC	2																																																																																																																						2
TTTATG	13	5	1																																																																																																																				19
TTTATT	61	10	1	1																																																																																																																			73
TTTCAT	1	3																																																																																																																					4
TTTCCT	3		1		1																																																																																																																		5
TTTCTA	2																							1																																																																																															3
TTTCTC	1	1																																																																																																																					2
TTTCTG	4																																																																																																																						4
TTTCTT	15	4	1																																																																																																																				20
TTTGTA	1	1																																																																																																																					2
TTTGTC		1																																																																																																																					1
TTTGTG	3	2																																																																																																																					5
TTTGTT	3	3	1																																																																																																																				7
TTTTAA	10	5	1																																																																																																																				16
TTTTAC	1																																																																																																																						1
TTTTAT	34	4																																																																																																																					38
TTTTCA	1	1	1																																																																																																																				3
TTTTCC	6																																																																																																																						6
TTTTCT	21	3		1																																																																																																																			25
TTTTGA	1																																																																																																																						1
TTTTGT	5				1																																																																																																																		6
TTTTTA	86	32	5	2																																																																																																																			125
TTTTTC	47	12	8	2																																																																																																																			69
TTTTTG	7	2	1																																																																																																																				10

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2184	1909	1708	1628	1454	1308	1194	1078	994	807	617	483	378	328	284	260	247	203	137	134	68	42	36	35	23	18	12	8	9	11	7	7	3	1	4	3	2	1			1	1	2	1	1		1	1		1				1				1		1		1	1													1																	1							1	1	17643
AC/GT	-	-	-	229	73	25	15	8	3	3																																																																																																													356
AG/CT	-	-	-	32	14	6	3	1		2	2																																																																																																												60
AT/AT	-	-	-	12128	7819	5899	4791	4536	4121	3706	3120	2830	2513	2218	1813	1511	1264	959	812	615	439	343	197	161	106	69	35	25	17	7	9	2	2		2	1	4	1																																																																																	62075
CG/CG	-	-	-	2																																																																																																																			2
AAC/GTT	-	-	77	47	25	15	12	8	11	2	4	2	1	3	2	2		1				1				1																																																																																													214
AAG/CTT	-	-	151	61	32	16	15	14	9			3									1																																																																																																		302
AAT/ATT	-	-	2676	1442	1042	760	527	379	232	146	96	32	36	23	11	8	4	12	5	4		5				1																																																																																													7441
ACC/GGT	-	-	20	1	1	1																																																																																																																	23
ACG/CGT	-	-	5	1																																																																																																																			6
ACT/AGT	-	-	114	76	12	15	1	4				3			1	1				1																																																																																																			228
AGG/CCT	-	-	8	4	6	1																																																																																																																	19
ATC/ATG	-	-	252	110	47	15	15	4	2	1		1						1	1																																																																																																				449
AAAC/GTTT	-	63	17	9	5	3				1		1																							1																																																																																				100
AAAG/CTTT	-	111	29	17	9	2	2	2	7		2																																																																																																												181
AAAT/ATTT	-	3447	1807	878	462	234	103	60	17	2	9	1		1			2													1																																																																																									7024
AACT/AGTT	-	2																																																																																																																					2
AAGC/CTTG	-	1																																																																																																																					1
AAGG/CCTT	-	2		1																																																																																																																			3
AAGT/ACTT	-	4					1																																																																																																																5
AATC/ATTG	-	1	3	4	1																																																																																																																		9
AATG/ATTC	-	16	6	4	4			1						3																																																																																																									34
AATT/AATT	-	44	11	3	1																																																																																																																		59
ACAT/ATGT	-	340	133	76	44	15	13	3	8	8	5	3		3	3	2			2	1					1			1	2		1	2																1	1										1	1							3																																																				673
AGAT/ATCT	-	15	1	1																																																																																																																			17
AGCT/AGCT	-	3																																																																																																																					3
ATCC/ATGG	-		1																																																																																																																				1
ATGC/ATGC	-	3																																																																																																																					3
AAAAC/GTTTT	123	33	13	4	2	1																																																																																																																	176
AAAAG/CTTTT	411	102	39	15																																																																																																																			567
AAAAT/ATTTT	2576	857	360	107	30	13	5	4	3	2	4	1			1		1																																																																																																						3964
AAACC/GGTTT		1																																																																																																																					1
AAAGC/CTTTG	2	1																																																																																																																					3
AAAGG/CCTTT	26	8	1	3	1				1	1	1		1					1																																																																																																					44
AAAGT/ACTTT	2																																																																																																																						2
AAATC/ATTTG	16	1	6	4		1																																																																																																																	28
AAATG/ATTTC	55	15	4	1	1																																																																																																																		76
AAATT/AATTT	132	24	15	3																																																																																																																			174
AACAC/GTGTT	2	1	3																																																																																																																				6
AACAG/CTGTT	6																																																																																																																						6
AACAT/ATGTT	29	1	1	2																																																																																																																			33
AACCT/AGGTT	1																																																																																																																						1
AACTG/AGTTC	1																																																																																																																						1
AACTT/AAGTT	2																																																																																																																						2
AAGAC/CTTGT	1																																																																																																																						1
AAGAG/CTCTT	2																																																																																																																						2
AAGAT/ATCTT	5	2																																																																																																																					7
AAGCC/CTTGG	1																																																																																																																						1
AAGGG/CCCTT	1		2																																																																																																																				3
AAGTG/ACTTC		3																																																																																																																					3
AATAC/ATTGT	19	12	1			2								1																																																																																																									35
AATAG/ATTCT	17	2	2																																																																																																																				21
AATAT/ATATT	1880	389	114	54	27	14	14	10	13	4	13	7	4		3	4				1		1	3	1			1																																																																																												2557
AATCT/AGATT	1																																																																																																																						1
AATGG/ATTCC	10	3		1																																																																																																																			14
AATGT/ACATT	7																																																																																																																						7
AATTC/AATTG	3	4	3	1																																																																																																																			11
ACATC/ATGTG	32																																																																																																																						32
ACATG/ATGTC	1																																																																																																																						1
ACTAT/AGTAT	4																																																																																																																						4
AGATG/ATCTC	1																																																																																																																						1
ATATC/ATATG	17	8	4																																																																																																																				29
AAAAAC/GTTTTT	41	15	10		3																																																																																																																		69
AAAAAG/CTTTTT	237	73	23	4																																																																																																																			337
AAAAAT/ATTTTT	619	134	23	3	2		1		1																																																																																																														783
AAAAGG/CCTTTT	25	6	3	1	3																																																																																																																		38
AAAAGT/ACTTTT	4	2																																																																																																																					6
AAAATC/ATTTTG	6	1																																																																																																																					7
AAAATG/ATTTTC	36	18	8	1																																																																																																																			63
AAAATT/AATTTT	43	11	3																																																																																																																				57
AAACAC/GTGTTT	7	6																																																																																																																					13
AAACAG/CTGTTT	7																																																																																																																						7
AAACAT/ATGTTT	42	12	3	5	2				1																																																																																																														65
AAACCT/AGGTTT	58	4																																																																																																																					62
AAAGAC/CTTTGT	1	1	2																																																																																																																				4
AAAGAG/CTCTTT	10	5	4																																																																																																																				19
AAAGAT/ATCTTT	25	4																																																																																																																					29
AAAGGG/CCCTTT	3	1																																																																																																																					4
AAAGGT/ACCTTT	4																																																																																																																						4
AAAGTT/AACTTT	1																																																																																																																						1
AAATAC/ATTTGT	10	4	2																																																																																																																				16
AAATAG/ATTTCT	5	2																						1																																																																																															8
AAATAT/ATATTT	860	133	39	7	3	1		3																																																																																																															1046
AAATCT/AGATTT	5																																																																																																																						5
AAATGC/ATTTGC	3																																																																																																																						3
AAATGG/ATTTCC	5	1																																																																	1																																																				7
AAATGT/ACATTT	16	4	2																																																																																																																				22
AAATTG/AATTTC		2																																																																																																																					2
AAATTT/AAATTT	5	1																																																																																																																					6
AACAAG/CTTGTT	7		1																																																																																																																				8
AACAAT/ATTGTT	25	10	5	1		1																																																																																																																	42
AACACC/GGTGTT	2																																																																																																																						2
AACACG/CGTGTT		1																																																																																																																					1
AACACT/AGTGTT		1																																																																																																																					1
AACAGC/CTGTTG	1																																																																																																																						1
AACATC/ATGTTG	4		1																																																																																																																				5
AACATG/ATGTTC	4	2	1																																																																																																																				7
AACATT/AATGTT	6	1																																																																																																																					7
AACCAT/ATGGTT	1																																																																																																																						1
AACCCT/AGGGTT	2																																																																																																																						2
AACGAT/ATCGTT	1	1	1																																																																																																																				3
AACGTC/ACGTTG	1																																																																																																																						1
AACTAG/AGTTCT		3																																																																																																																					3
AACTAT/AGTTAT	2																																																																																																																						2
AACTGC/AGTTGC	2																																																																																																																						2
AAGAAT/ATTCTT	16	2																																																																																																																					18
AAGACC/CTTGGT	2																																																																																																																						2
AAGACG/CGTCTT	22																																																																																																																						22
AAGAGC/CTCTTG			1			1																																																																																																																	2
AAGAGG/CCTCTT	9	3																																																																																																																					12
AAGAGT/ACTCTT	1																																																																																																																						1
AAGATC/ATCTTG	2																																																																																																																						2
AAGATG/ATCTTC	9	6	2	1																																																																																																																			18
AAGCTC/AGCTTG		2																																																																																																																					2
AAGGAC/CCTTGT	1																																																																																																																						1
AAGGAG/CCTTCT	4	2	1																																																																																																																				7
AAGGAT/ATCCTT	6																																																																																																																						6
AAGGGG/CCCCTT		1																																																																																																																					1
AAGGTC/ACCTTG		1																																																																																																																					1
AAGGTG/ACCTTC	2	2																																																																																																																					4
AAGTAG/ACTTCT	1																																																																																																																						1
AATACC/ATTGGT	1																																																																																																																						1
AATACT/AGTATT	2																																																																																																																						2
AATAGG/ATTCCT	1																																																																																																																						1
AATAGT/ACTATT	32	10	7		2		1																																																																																																																52
AATATC/ATATTG	1																																																																																																																						1
AATATG/ATATTC	3	5																																																																																																																					8
AATATT/AATATT	13	1																																																																																																																					14
AATCAG/ATTCTG		2																																																																																																																					2
AATCAT/ATGATT	5	1		1			1																																																																																																																8
AATCTG/AGATTC	1																																																																																																																						1
AATGAC/ATTGTC								1																																																																																																															1
AATGAT/ATCATT	53	9	2	1	1	1	1																																																																																																																68
AATGCT/AGCATT						1																																																																																																																	1
AATGGT/ACCATT	3		1																																																																																																																				4
AATGTC/ACATTG		1																																																																																																																					1
AATGTG/ACATTC	1																																																																																																																						1
AATTAC/AATTGT	3		2																																																																																																																				5
AATTAG/AATTCT	2																																																																																																																						2
AATTAT/AATTAT	41	10	2																																																																																																																				53
ACACAT/ATGTGT	5	3		2																																																																																																																			10
ACACCC/GGGTGT	3																																																																																																																						3
ACACTC/AGTGTG	1																																																																																																																						1
ACAGAT/ATCTGT	1																																																																																																																						1
ACATAT/ATATGT	64	15	3	1		1	1			1																																																																																																													86
ACATCC/ATGTGG	1																																																																																																																						1
ACATGG/ATGTCC	1																																																																																																																						1
ACATGT/ACATGT	1																																																																																																																						1
ACCACT/AGTGGT	1																																																																																																																						1
ACCAGC/CTGGTG	2	2																																																																																																																					4
ACCATC/ATGGTG	5	1																																																																																																																					6
ACCTCC/AGGTGG	1	1																																																																																																																					2
ACGATG/ATCGTC	5	4																																																																																																																					9
ACTCAG/AGTCTG	2	2																																																																																																																					4
AGAGAT/ATCTCT	3																																																																																																																						3
AGATAT/ATATCT	16																	1																																																																																																					17
AGCATC/ATGCTG		1	1																																																																																																																				2
AGGATG/ATCCTC	1																																																																																																																						1
AGGGGG/CCCCCT	3																																																																																																																						3
ATATGC/ATATGC	3																																																																																																																						3
ATCATG/ATCATG	1																																																																																																																						1
