Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_001861045.1/fasta/hub_GCA_001861045.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2448
Total size of examined sequences (bp):           31530061
Total number of identified SSRs:                 91612
Number of SSR containing sequences:              2233
Number of sequences containing more than 1 SSR:  2062
Number of SSRs present in compound formation:    39152


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	15937
2	50660
3	8631
4	6726
5	6888
6	2770

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	819	757	718	607	569	520	463	462	416	354	305	238	250	194	186	167	139	110	98	102	69	57	67	39	34	32	38	20	30	20	23	24	22	21	13	14	7	8	6	7	9	9	4	7	5	5	1	4	1	5	1	7	1	1	5	1	1	1		1	1	1	1		2		3	1		1	1	1		1		1	1				1		1			1																	1			1															1																											1	8116
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	794	753	625	603	573	540	470	441	420	351	267	225	211	170	142	167	130	89	127	69	70	54	54	47	36	29	33	33	31	25	30	26	17	11	15	10	12	14	9	10	6	5	5	3	6	3	6	9	3	4	2	2	1	3	4	2	1	5		2	1		4	2	1		1			1	1	2									1															1																											1																										7821
AC	-	-	-	33	15	6	3			1	1																																																																																																																																																											59
AG	-	-	-	8	3	5	2	1																																																																																																																																																														19
AT	-	-	-	5327	3323	2775	2516	2338	2219	2089	1836	1790	1525	1246	973	846	664	484	403	291	198	154	118	71	58	34	23	18	13	6	1	1	1	1		1					1																																																																																																																													31344
CA	-	-	-	76	5	4	1	2																																																																																																																																																														88
CT	-	-	-	6	2			2																																																																																																																																																														10
GA	-	-	-	3		1	3																																																																																																																																																															7
GC	-	-	-	1																																																																																																																																																																		1
GT	-	-	-	12	10	5	5	2																																																																																																																																																														34
TA	-	-	-	3990	2573	1855	1570	1390	1252	1189	1004	887	744	556	500	352	276	235	187	129	87	41	46	31	17	9	8	2	5	5		2		1	3			1		1																																																																																																																														18948
TC	-	-	-	11	8	2		1			1																																																																																																																																																											23
TG	-	-	-	84	22	9	3	4	4	1																																																																																																																																																												127
AAC	-	-	31	15	7	4	2	3	3	3						1	1											1							1																																																																																																																																			72
AAG	-	-	26	5	6	3	4	1		2														1																																																																																																																																														48
AAT	-	-	522	319	235	149	107	75	48	33	18	13	6	7	1	1	3	2	1			1		1	1																																																																																																																																													1543
ACA	-	-	8	1	5			1				1		3																							1																																																																																																																																	20
ACG	-	-	1																																																																																																																																																																			1
ACT	-	-	7	4	1		1		1																																																																																																																																																													14
AGA	-	-	5	3	2		1		1																						1																																																																																																																																							13
AGG	-	-				1																																																																																																																																																																1
AGT	-	-	9	12		1																																																																																																																																																																22
ATA	-	-	522	257	187	137	90	69	39	26	23	12	5	3	5	3	1	1		1	2		1	1		1																																1																																																																																																												1387
ATC	-	-	57	33	5	5	1	1			1					1																																																																																																																																																						104
ATG	-	-	61	15	7		1	1																								1																																																																																																																																						86
ATT	-	-	390	252	186	115	105	59	42	30	17	9	8	4	2	2	1																																																																																																																																																					1222
CAA	-	-	8	4	5	2	1	3	1							1			1																																																																																																																																																			26
CAC	-	-			1		1																																																																																																																																																															2
CAG	-	-	1																																																																																																																																																																			1
CAT	-	-	13	8	7	1		2	1	2																																																																																																																																																												34
CCA	-	-	4	1			1																																																																																																																																																															6
CCT	-	-			1																																																																																																																																																																	1
CTA	-	-	6	7	2		2																																																																																																																																																															17
CTC	-	-		1	1																																																																																																																																																																	2
CTG	-	-	1																																																																																																																																																																			1
CTT	-	-	7	8	1			1																																																																																																																																																														17
GAA	-	-	41	23	14	8	5	5	1																																																																																																																																																													97
GAC	-	-	4	3																																																																																																																																																																		7
GAG	-	-	5	2	1					1																																																																																																																																																												9
GAT	-	-	37	18	12	2		1	1																																																																																																																																																													71
GGA	-	-					1																																																																																																																																																															1
GGT	-	-	2		2																																																																																																																																																																	4
GTA	-	-	23	19	2	1	2																																																																																																																																																															47
GTG	-	-	2	1																																																																																																																																																																		3
GTT	-	-	4	3	5	2	1	2	1				1												1																																																																																																																																													20
TAA	-	-	247	148	117	77	56	27	24	13	9	7	5	1	1	3			3				1	1		1																																																																																																																																												741
TAC	-	-	37	17	5	3	1	2	1	1											1																																																																																																																																																	68
TAG	-	-	18	14	6	1		4			1									1							1																																																																																																																																											46
TAT	-	-	462	283	241	156	118	83	48	31	15	13	9	4	3	1	2			2							1																																																																																																																																											1472
TCA	-	-	53	17	11	5	4	2	1		1							1	1									1																																																																																																																																										97
TCC	-	-	5	2				1																																																																																																																																																														8
TCG	-	-	3																																																																																																																																																																			3
TCT	-	-	32	9	9	5	2	5		1																																																																																																																																																												63
TGA	-	-	21	10	8	4																																																																																																																																																																43
TGG	-	-	7				1																																																																																																																																																															8
TGT	-	-	16	7	5	5	4	1		1		1	1																																																																																																																																																									41
TTA	-	-	401	175	131	89	60	49	25	26	15	4	2	5	4	3						1					1																																																																																																																																											991
TTC	-	-	45	20	8	7	2		2													1																																																																																																																																																85
TTG	-	-	25	15	7	4	3	6	2	2		1					1																																																																																																																																																					66
AAAC	-	14	5	3	3		1		1																																																																																																																																																													27
AAAG	-	8	4	4	4	1						1																																																																																																																																																										22
AAAT	-	498	295	159	74	33	16	9	1	1	1																																																																																																																																																											1087
AACA	-	2	1		1																																																																																																																																																																	4
AAGA	-	10	2		1	1																																																																																																																																																																14
AAGG	-	2																																																																																																																																																																				2
AAGT	-	1		1																																																																																																																																																																		2
AATA	-	341	175	114	67	26	17	5	2	2																																																																																																																																																												749
AATG	-	3	1	1	1																																																																																																																																																																	6
AATT	-	3	2	1																																																																																																																																																																		6
ACAA	-				2																																																																																																																																																																	2
ACAT	-	32	10	7	2	2	2		1	1		1								1																																		1																																																																																																																60
ACTT	-	1																																																																																																																																																																				1
AGAA	-	5		1	1																																																																																																																																																																	7
AGAT	-	1																																																																																																																																																																				1
AGTA	-	1																																																																																																																																																																				1
ATAA	-	522	198	106	46	29	15	15	2	2	1	1	2																																																																																																																																																									939
ATAC	-	69	36	17	6	4	2	2	2	3				1				1				1	1							1			1	1	1																																																																																																																																			149
ATCT	-	1																																																																																																																																																																				1
ATGA	-	1		2																																																																																																																																																																		3
ATGC	-	1																																																																																																																																																																				1
ATGT	-	15	5	3	2	1				1		1				1																																																																																																																																																						29
ATTA	-	5	1																																																																																																																																																																			6
ATTC	-	3	1		1	1																																																																																																																																																																6
ATTT	-	251	127	64	28	12	7	4	2	1					1																																																																																																																																																							497
CAAA	-	1		1	3																																																																																																																																																																	5
CAAT	-		2	2																																																																																																																																																																		4
CATA	-	21	7	2	4	3	1																																																																																																																																																															38
CATC	-	1																																																																																																																																																																				1
CATT	-	1																																																																																																																																																																				1
CTTT	-	1	2																																																																																																																																																																			3
GAAA	-	8	2	4				1																																																																																																																																																														15
GAAG	-	1																																																																																																																																																																				1
GAAT	-	1	4																																																																																																																																																																			5
GATA	-	1																																																																																																																																																																				1
GCTA	-	1																																																																																																																																																																				1
GGAT	-	1		1																																																																																																																																																																		2
GTAT	-	18	5	5	5			1	1		1		1								1							1										1																																										1																																																								1								1																						43
GTTT	-	6	1					1																																																																																																																																																														8
TAAA	-	183	85	39	22	6	3	1																																																																																																																																																														339
TAAC	-	1																																																																																																																																																																				1
TAAT	-	9	4	1																																																																																																																																																																		14
TACA	-	14	8	7	2	1	1									1															1									1	1																																																																																																																													37
TAGA	-	1																																																																																																																																																																				1
TAGT	-	1																																																																																																																																																																				1
TATG	-	76	37	11	6	4	5	1	1	1	1	1									1					1																																1																																																																																																												147
TATT	-	540	250	135	50	24	15	8	3	2	3																																																																																																																																																											1030
TCAT	-				1																																																																																																																																																																	1
TCTT	-	4	2					1		2																																																																																																																																																												9
TGAA	-	1	1																																																																																																																																																																			2
TGAT	-	1	2	1																																																																																																																																																																		4
TGTA	-	21	8	6	2	3																																																																																																																																																																40
TGTT	-	2	1		3																																																																																																																																																																	6
TTAA	-	3	1	1																																																																																																																																																																		5
TTAT	-	280	143	68	36	15	8	5	6																																																																																																																																																													561
TTCA	-	1																																																																																																																																																																				1
TTCT	-	4	2	3																																																																																																																																																																		9
TTGA	-			1																																																																																																																																																																		1
TTGC	-	1																																																																																																																																																																				1
TTGT	-	4		2	1		1																																																																																																																																																															8
TTTA	-	344	147	115	39	22	9	2	5	2	1	1																																																																																																																																																										687
TTTC	-	24	9	2	5	1		1																																																																																																																																																														42
TTTG	-	14	3	4	3		1		2		1																										1																																																																																																																																	29
AAAAC	34	14	3	1																																																																																																																																																																		52
AAAAG	56	22	3	1																																																																																																																																																																		82
AAAAT	487	189	94	28	6	5	3			1					1																																																																																																																																																							814
AAACA	6		1																																																																																																																																																																			7
AAAGA	9	2	1																																																																																																																																																																			12
AAAGC	2				1																																																																																																																																																																	3
AAAGG	3	3																																																																																																																																																																				6
AAATA	160	53	32	7	3	1				1																																																																																																																																																												257
AAATC	7	2	1	2																																																																																																																																																																		12
AAATG	16	3	1																																																																																																																																																																			20
AAATT	18	4	2			1																																																																																																																																																																25
AACAA	8	3	2																																																																																																																																																																			13
AACAC	2	1																																																																																																																																																																				3
AACAG	1																																																																																																																																																																					1
AACAT	1	1																																																																																																																																																																				2
AACCA		2																																																																																																																																																																				2
AAGAA	18	1	1	2																																																																																																																																																																		22
AAGAG	1																																																																																																																																																																					1
AAGAT	1																																																																																																																																																																					1
AATAA	187	52	16	2	1	1																																																																																																																																																																259
AATAC	5	5	1																																																																																																																																																																			11
AATAG	3																																																																																																																																																																					3
AATAT	112	28	13	6	3	2		2		2	1				2																			1																																																																																																																																				172
AATGA	3	1																																																																																																																																																																				4
AATGG	21	21	4	5	7	4	4	5	2	2		2						1																																																																																																																																																				78
AATTA	4	1	1																																																																																																																																																																			6
AATTC		2	2																																																																																																																																																																			4
AATTG	2																																																																																																																																																																					2
AATTT	4	1																																																																																																																																																																				5
ACAAA	7	3	1																																																																																																																																																																			11
ACAAC	1																																																																																																																																																																					1
ACAAG			1																																																																																																																																																																			1
ACAAT		2	3	1																																																																																																																																																																		6
ACAGA	1																																																																																																																																																																					1
ACATC	1																																																																																																																																																																					1
ACATG		1																																																																																																																																																																				1
AGAAA	15	8	2	1																																																																																																																																																																		26
AGAAC	1																																																																																																																																																																					1
AGAAT	1																																																																																																																																																																					1
AGGAA	1	2																																																																																																																																																																				3
AGGGA	1																																																																																																																																																																					1
AGTAT	1																																																																																																																																																																					1
ATAAA	156	29	14	3	1	1	1	1																																																																																																																																																														206
ATAAC	1																																																																																																																																																																					1
ATAAG	1	1																																																																																																																																																																				2
ATAAT	109	23	8	3	3		2	2		2	1	1	1																																																																																																																																																									155
ATACA	4																																																																																																																																																																					4
ATACT	1																																																																																																																																																																					1
ATAGA	1																																																																																																																																																																					1
ATATA	419	76	24	5	6	2	1	1		1		1		1	1	1			1					1			1																																																																																																																																											542
ATATC	3	1																																																																																																																																																																				4
ATATG	3	3																																																																																																																																																																				6
ATATT	61	23	6	8	1		2									1																																																																																																																																																						102
ATCAA	1																																																																																																																																																																					1
ATCAT	3			2																																																																																																																																																																		5
ATCTC	1																																																																																																																																																																					1
ATCTT	1																																																																																																																																																																					1
ATGAA	1																																																																																																																																																																					1
ATGAT	1																																																																																																																																																																					1
ATGGA	1		1			1		1	1																																																																																																																																																													5
ATGTT	1																																																																																																																																																																					1
ATTAA	3	3																																																																																																																																																																				6
ATTAG	1																																																																																																																																																																					1
ATTAT	76	14	5	2	1									1							1																																																																																																																																																	100
ATTCC	12	16	12	6	6	5	3	10	5	2	3	2	1		1	1									1																																																																																																																																													86
ATTCT	3																																																																																																																																																																					3
ATTGT		1																																																																																																																																																																				1
ATTTA	15	3	1			1																																																																																																																																																																20
ATTTC	13	4	5	1																																																																																																																																																																		23
ATTTG	3	1	1																																																																																																																																																																			5
ATTTT	144	38	18	9	2		2	1																																																																																																																																																														214
CAAAA	5						1																																																																																																																																																															6
CAACA	1																																																																																																																																																																					1
CAATA		1																																																																																																																																																																				1
CAATG	1																																																																																																																																																																					1
CACAT	1																																																																																																																																																																					1
CATAA	4																																																																																																																																																																					4
CATAT	4																																																																																																																																																																					4
CATCA	13																																																																																																																																																																					13
CATTA	1																																																																																																																																																																					1
CATTC	20	10	1	5	4		4				1																																																																																																																																																											45
CCACA	3																																																																																																																																																																					3
CCATT	3	2	1	1	2				1					1																																																																																																																																																								11
CCTTC		3																																																																																																																																																																				3
CTATT	1																																																																																																																																																																					1
CTTTA	1																																																																																																																																																																					1
CTTTC	2																																																																																																																																																																					2
CTTTT	22	8																																																																																																																																																																				30
GAAAA	56	12	2	2																																																																																																																																																																		72
GAAAG	1																																																																																																																																																																					1
GAAAT	7	1	1																																																																																																																																																																			9
GAATA	1																																																																																																																																																																					1
GAATG	40	20	6	4	2	3	3	4	1	3	4	2	1	4	2				1																																																																																																																																																			100
GAATT			1																																																																																																																																																																			1
GATAT	2	1																																																																																																																																																																				3
GGAAT	17	36	8	5	5	6	16	5	2	5	1	2		2		1		1		1	1				1																																																																																																																																													115
GGGAA	1																																																																																																																																																																					1
GGTTA	1																																																																																																																																																																					1
GTATA	1																																																																																																																																																																					1
GTATT	1																																																																																																																																																																					1
GTTTG		2																																																																																																																																																																				2
GTTTT	2																																																																																																																																																																					2
TAAAA	81	32	7	3										1																																																																																																																																																								124
TAAAT	9	1	1																																																																																																																																																																			11
TAAGT	2																																																																																																																																																																					2
TAATA	37	13	2	2	1		1		1																																																																																																																																																													57
TAATT	4	3	1																																																																																																																																																																			8
TACAT	1																																																																																																																																																																					1
TATAA	69	15	9	3	1				1																																																																																																																																																													98
TATAC	1																																																																																																																																																																					1
TATAG	1																																																																																																																																																																					1
TATAT	425	51	17	11	3	2		3		1	3			1										1																																																																																																																																														518
TATCA			1																																																																																																																																																																			1
TATCT			1																																																																																																																																																																			1
TATGT	9																																																																																																																																																																					9
TATTA	91	19	12	10	3	1	1				1	3	1			1																																																																																																																																																						143
TATTC	4	1																																																																																																																																																																				5
TATTG	6	1																																																																																																																																																																				7
TATTT	173	54	25	3	4	1	3																																																																																																																																																															263
TCAAT			1																																																																																																																																																																			1
TCATA	2		1																																																																																																																																																																			3
TCATT	4																																																																																																																																																																					4
TCCAT	13	3	4	3			2	2				1																																																																																																																																																										28
TCCGT			1																																																																																																																																																																			1
TCTGT	1																																																																																																																																																																					1
TCTTT	5	1																																																																																																																																																																				6
TGAAA	2	5																																																																																																																																																																				7
TGATG	12																																																																																																																																																																					12
TGGAA	13	9	17	4	5	2	4	2	6			1			2			2																																																																																																																																																				67
TGTAT	2																																																																																																																																																																					2
TGTTA	3																																																																																																																																																																					3
TGTTC		1																																																																																																																																																																				1
TGTTG	1																																																																																																																																																																					1
TGTTT	10	5																																																																																																																																																																				15
TTAAA	3	2																																																																																																																																																																				5
TTAAT	8	3																																																																																																																																																																				11
TTATA	87	18	5	5	3	2				1				1		1	1																																																																																																																																																					124
TTATC	1																																																																																																																																																																					1
TTATT	227	78	34	11	2	1		1	1																																																																																																																																																													355
TTCAT	1																																																																																																																																																																					1
TTCCA	24	8	9	1	1		1				1																																																																																																																																																											45
TTCCT	1																																																																																																																																																																					1
TTCTA				1																																																																																																																																																																		1
TTCTT	22	5	1																																																																																																																																																																			28
TTGAT	1																																																																																																																																																																					1
TTGGC	1																																																																																																																																																																					1
TTGTA		1																																																																																																																																																																				1
TTGTG	1																																																																																																																																																																					1
TTGTT	5	2						1																																																																																																																																																														8
TTTAA	13	3	1																																																																																																																																																																			17
TTTAT	216	74	24	4	2	1				1																																																																																																																																																												322
TTTCA	5	2																																																																																																																																																																				7
TTTCC	3	1		1			1																																																																																																																																																															6
TTTCT	20	4	4	1																																																																																																																																																																		29
TTTGA	2																																																																																																																																																																					2
TTTGC	1				1																																																																																																																																																																	2
TTTGT	7	2	3																																																																																																																																																																			12
TTTTA	321	122	41	5	1				1	1																																																																																																																																																												492
TTTTC	91	15	3		1																																																																																																																																																																	110
TTTTG	19	10	3																																																																																																																																																																			32
AAAAAC	4	6	1	1						1																																																																																																																																																												13
AAAAAG	37	11	3	2	2																		1																																																																																																																																															56
AAAAAT	127	29	10	1	1																																																																																																																																																																	168
AAAACA	4			1	2				1																																																																																																																																																													8
AAAAGA	21	4	1	1																																																																																																																																																																		27
AAAAGG	1	1																																																																																																																																																																				2
AAAATA	55	12	4	1																																																																																																																																																																		72
AAAATC	1																																																																																																																																																																					1
AAAATG	7	5	3	1			1																																																																																																																																																															17
AAAATT	3																																																																																																																																																																					3
AAACAA	1	1																																																																																																																																																																				2
AAACAC			1																																																																																																																																																																			1
AAACAT	3	1	1		1																																																																																																																																																																	6
AAACCC	1																																																																																																																																																																					1
AAAGAA	17	5																																																																																																																																																																				22
AAAGAC		1																																																																																																																																																																				1
AAAGAG		1	1		1																																																																																																																																																																	3
AAAGAT	7																																																																																																																																																																					7
AAAGGA																															1																																																																																																																																							1
AAAGGG		1																																																																																																																																																																				1
AAAGTA		1																																																																																																																																																																				1
AAATAA	28	4	1																																																																																																																																																																			33
AAATAC	3																																																																																																																																																																					3
AAATAG	1				1																																																																																																																																																																	2
AAATAT	55	7	4		2																																																																																																																																																																	68
AAATCA	1	1																																																																																																																																																																				2
AAATGA	2	1	1																																																																																																																																																																			4
AAATGG	1				1																																																																																																																																																																	2
AAATGT	3																																																																																																																																																																					3
AAATTA	3																																																																																																																																																																					3
AAATTT	1																																																																																																																																																																					1
AACAAA	4																																																																																																																																																																					4
AACAAG	1	1																																																																																																																																																																				2
AACAAT	1																																																																																																																																																																					1
AACACA	1																																																																																																																																																																					1
AACATA		4																																																																																																																																																																				4
AACATC		1																																																																																																																																																																				1
AACATG		1																																																																																																																																																																				1
AACCAT	1																																																																																																																																																																					1
AACCCT	2																																																																																																																																																																					2
AACTAT	1																																																																																																																																																																					1
AAGAAA	15	4	2	1																																																																																																																																																																		22
AAGAAC	1																																																																																																																																																																					1
AAGAGC					1																																																																																																																																																																	1
AAGAGG	1																																																																																																																																																																					1
AAGATG	2			3																																																																																																																																																																		5
AAGGAA										1																																																																																																																																																												1
AAGGAG	2																																																																																																																																																																					2
AAGGAT	1																																																																																																																																																																					1
AAGGTC		1																																																																																																																																																																				1
AATAAA	26	4																																																																																																																																																																				30
AATAAC	3	2																																																																																																																																																																				5
AATAAG	3																																																																																																																																																																					3
AATACA		1																																																																																																																																																																				1
AATAGT	5																																																																																																																																																																					5
AATATA	40	10	1																																																																																																																																																																			51
AATATC	1																																																																																																																																																																					1
AATATT	8																																																																																																																																																																					8
AATCAA	1																																																																																																																																																																					1
AATGAA	2	1																																																																																																																																																																				3
AATGAT	5																																																																																																																																																																					5
AATGTA	1	3																																																																																																																																																																				4
AATTAA	3																																																																																																																																																																					3
AATTAT	6																																																																																																																																																																					6
AATTCT	1																																																																																																																																																																					1
AATTTT			1																																																																																																																																																																			1
ACAAAA	2																																																																																																																																																																					2
ACAAAC	2		1																																																																																																																																																																			3
ACAAAT	3	2																																																																																																																																																																				5
ACAAGA	2																																																																																																																																																																					2
ACAATA	1	1																																																																																																																																																																				2
ACAATT		1																																																																																																																																																																				1
ACACAT		1																																																																																																																																																																				1
ACATAA	4																																																																																																																																																																					4
ACATAC		1	1																																																																																																																																																																			2
ACATAT	8	1																																																																																																																																																																				9
ACATCA	1																																																																																																																																																																					1
ACATGT		1																																																																																																																																																																				1
ACATTG	1																																																																																																																																																																					1
ACATTT	1																																																																																																																																																																					1
ACGAAG	1																																																																																																																																																																					1
ACTAAC		1																																																																																																																																																																				1
ACTATT	3	1		1																																																																																																																																																																		5
AGAAAA	8	4		1																																																																																																																																																																		13
AGAAAC	1																																																																																																																																																																					1
AGAAGG	1																																																																																																																																																																					1
AGAGAA	2																																																																																																																																																																					2
AGAGAT	2																																																																																																																																																																					2
AGATAA	3	1																																																																																																																																																																				4
AGATAT	1																																																																																																																																																																					1
AGGAAA	2	1																																																																																																																																																																				3
AGGAAG		1																																																																																																																																																																				1
AGGTGG	1																																																																																																																																																																					1
AGTAAT		1																																																																																																																																																																				1
ATAAAA	27	4																																																																																																																																																																				31
ATAAAC	10	2		2	1	1																				1																																																																																																																																												17
ATAAAG	1		1																																																																																																																																																																			2
ATAAAT	92	18	3	2	2																																																																																																																																																																	117
ATAACA		3																																																																																																																																																																				3
ATAATC	2	1																																																																																																																																																																				3
ATAATG	8	2																																																																																																																																																																				10
ATAATT	17	4																																																																																																																																																																				21
ATACAC		1																																																																																																																																																																				1
ATACAT	8			1																																																																																																																																																																		9
ATAGGA	1																																																																																																																																																																					1
ATAGTA	2	1																																																																																																																																																																				3
ATAGTC	2																																																																																																																																																																					2
ATATAA	112	3	2		1																																																																																																																																																																	118
ATATAC	13	2																																																																																																																																																																				15
ATATAG	2				1																																																																																																																																																																	3
ATATGC	3																																																																																																																																																																					3
ATATGT	7		2				1																																																																																																																																																															10
ATATTA	4	1																																																																																																																																																																				5
ATATTC	1																																																																																																																																																																					1
ATATTT	30	7	1	1																																																																																																																																																																		39
ATCAAC	1							1																																																																																																																																																														2
ATCATA	1																																																																																																																																																																					1
ATCATG	2																																																																																																																																																																					2
ATCATT	9	1																																																																																																																																																																				10
ATCTTT	3																																																																																																																																																																					3
ATGAAA	2																																																																																																																																																																					2
ATGAAC													1																																																																																																																																																									1
ATGAAG	2																																																																																																																																																																					2
ATGAAT	1		1																																																																																																																																																																			2
ATGATA	7	3	1																																																																																																																																																																			11
ATGATC	1																																																																																																																																																																					1
ATGATT		1																																																																																																																																																																				1
ATGGTG	1																																																																																																																																																																					1
ATGTAA		2																																																																																																																																																																				2
ATGTAT	3																																																																																																																																																																					3
ATGTCC	1																																																																																																																																																																					1
ATGTTC	1																																																																																																																																																																					1
ATGTTT				1																																																																																																																																																																		1
ATTAAA	2																																																																																																																																																																					2
ATTAAC	1	1																																																																																																																																																																				2
ATTAAT	7																																																																																																																																																																					7
ATTACT		1	1																																																																																																																																																																			2
ATTATA	10	2																																																																																																																																																																				12
ATTATC	7	2	1																																																																																																																																																																			10
ATTATG	1																																																																																																																																																																					1
ATTGTT	3																																																																																																																																																																					3
ATTTAA	3	1																																																																																																																																																																				4
ATTTAC	6	2		1																																																																																																																																																																		9
ATTTAT	15	4	1																																																																																																																																																																			20
ATTTGT	1		1																																																																																																																																																																			2
ATTTTA	6																																																																																																																																																																					6
ATTTTC	8	1	2		1																																																																																																																																																																	12
ATTTTT	29	5	2																																																																																																																																																																			36
CAAAAA	1			1																																																																																																																																																																		2
CAAATG	1																																																																																																																																																																					1
CAACAG	1																																																																																																																																																																					1
CAAGAA	1																																																																																																																																																																					1
CAAGAG		1																																																																																																																																																																				1
CAATAA	1		1																																																																																																																																																																			2
CAATAC	1																																																																																																																																																																					1
CAATGA				1																																																																																																																																																																		1
CATATA	1	1																																																																																																																																																																				2
CATCAA	2																																																																																																																																																																					2
CATCAC	2																																																																																																																																																																					2
CATCCC		1																																																																																																																																																																				1
CATGAA	1																																																																																																																																																																					1
CATGAT		1																																																																																																																																																																				1
CATTAA		1																																																																																																																																																																				1
CATTAT	1																																																																																																																																																																					1
CATTTA	2	1																																																																																																																																																																				3
CATTTC	2		1		1	1																																																																																																																																																																5
CATTTG		1																																																																																																																																																																				1
CATTTT	1		1																																																																																																																																																																			2
CCACCT	2																																																																																																																																																																					2
CCATTA	3	1																																																																																																																																																																				4
CCATTT	2	1																																																																																																																																																																				3
CCTAAA	6																																																																																																																																																																					6
CCTTAT	1																																																																																																																																																																					1
CCTTTA	3																																																																																																																																																																					3
CCTTTC	1																																																																																																																																																																					1
CCTTTT	1			1																																																																																																																																																																		2
CGTCTT	1																																																																																																																																																																					1
CGTTTC		1																																																																																																																																																																				1
CTATTA	1	1																																																																																																																																																																				2
CTCTTT					1																																																																																																																																																																	1
CTTATT	1																																																																																																																																																																					1
CTTCAC	1																																																																																																																																																																					1
CTTCAT	1																																																																																																																																																																					1
CTTCTC	1																																																																																																																																																																					1
CTTGTT	1																																																																																																																																																																					1
CTTTTC	1	2																																																																																																																																																																				3
CTTTTT	12	3																																																																																																																																																																				15
GAAAAA	16	4	4	1	1																																																																																																																																																																	26
GAAAAC	1																																																																																																																																																																					1
GAAAAG	5	2																																																																																																																																																																				7
GAAAAT	7	1			1																																																																																																																																																																	9
GAAAGA	1	1																																																																																																																																																																				2
GAAATG			1			1																																																																																																																																																																2
GAAATT		1																																																																																																																																																																				1
GAACAC				1																																																																																																																																																																		1
GAACAT	2	1																																																																																																																																																																				3
GAAGAC	4																																																																																																																																																																					4
GAAGAG	1																																																																																																																																																																					1
GAAGAT	3	1																																																																																																																																																																				4
GAAGGA		1																																																																																																																																																																				1
GAAGGG		1																																																																																																																																																																				1
GAATAA	3																																																																																																																																																																					3
GAATAT	2	1																																																																																																																																																																				3
GACGAA	2																																																																																																																																																																					2
GAGAAA			1																																																																																																																																																																			1
GAGGAA	3																																																																																																																																																																					3
GATAAA	1																																																																																																																																																																					1
GATAAC	1																																																																																																																																																																					1
GATAAT	1																																																																																																																																																																					1
GATAGA	2	1																																																																																																																																																																				3
GATATA	1																																																																																																																																																																					1
GATCTT	1																																																																																																																																																																					1
GATGAA	5																																																																																																																																																																					5
GATGAC	1																																																																																																																																																																					1
GCATTT	1																																																																																																																																																																					1
GCTAAT		1																																																																																																																																																																				1
GCTTGA			1																																																																																																																																																																			1
GGAAAA	1																																																																																																																																																																					1
GGAAAT		1																																																																																																																																																																				1
GGAGGT	1																																																																																																																																																																					1
GGGTTT	1																																																																																																																																																																					1
GGTCTT	2																																																																																																																																																																					2
GGTGGA	1																																																																																																																																																																					1
GGTTTA	6	1																																																																																																																																																																				7
GTAAAA	4																																																																																																																																																																					4
GTAAAT		3																																																																																																																																																																				3
GTAATA	1																																																																																																																																																																					1
GTATAT	2		2																																																																																																																																																																			4
GTCAAC	1																																																																																																																																																																					1
GTGAAG		1																																																																																																																																																																				1
GTGGTC	1																																																																																																																																																																					1
GTGTTG	6																																																																																																																																																																					6
GTTATC				1																																																																																																																																																																		1
GTTATT	1			1																																																																																																																																																																		2
GTTCTT	1	1																																																																																																																																																																				2
GTTTAT				1	1																																																																																																																																																																	2
GTTTTT	1																																																																																																																																																																					1
TAAAAA	13	3		1																																																																																																																																																																		17
TAAAAG	2	1																																																																																																																																																																				3
TAAAAT	6	2	1																																																																																																																																																																			9
TAAACA	1		1																																																																																																																																																																			2
TAAATA	24	3	1																																																																																																																																																																			28
TAAATG	6	1																																																																																																																																																																				7
TAAATT	1																																																																																																																																																																					1
TAACAA	1			1																																																																																																																																																																		2
TAACTA	2																																																																																																																																																																					2
TAATAC	2																																																																																																																																																																					2
TAATAG	4	1																																																																																																																																																																				5
TAATGA	3	1																																																																																																																																																																				4
TAATGG	1																																																																																																																																																																					1
TAATGT	3																																																																																																																																																																					3
TAATTA	7	2																																																																																																																																																																				9
TAATTG		1																																																																																																																																																																				1
TAATTT	3																																																																																																																																																																					3
TACAAT			1																																																																																																																																																																			1
TACATA	1																																																																																																																																																																					1
TACATT		1																																																																																																																																																																				1
TACTAT	5	3																																																																																																																																																																				8
TACTTC	1																																																																																																																																																																					1
TAGAAC	1																																																																																																																																																																					1
TAGTAA	3	1																																																																																																																																																																				4
TATAAA	12	4		1																																																																																																																																																																		17
TATAAT	2	1	1																																																																																																																																																																			4
TATACA	2				1																																																																																																																																																																	3
TATATC	1																																																																																																																																																																					1
TATATG	7	4	3																																																																																																																																																																			14
TATATT	96	27	5	1		1																																																																																																																																																																130
TATCAT	2		1																																																																																																																																																																			3
TATCGT	1																																																																																																																																																																					1
TATCTA	1																																																																																																																																																																					1
TATCTT	3																																																																																																																																																																					3
TATGTA	2																																																																																																																																																																					2
TATGTG		1																																																																																																																																																																				1
TATGTT	5	1																																																																																																																																																																				6
TATTAA	5																																																																																																																																																																					5
TATTAC	6	7																																																																																																																																																																				13
TATTCT		1																																																																																																																																																																				1
TATTGT	1	2	1																																																																																																																																																																			4
TATTTA	88	14	2		2																																																																																																																																																																	106
TATTTC	1	1																																																																																																																																																																				2
TATTTG	2	1	1																																																																																																																																																																			4
TATTTT	41	12	2																																																																																																																																																																			55
TCAAAA	1		1																																																																																																																																																																			2
TCACAC	2																																																																																																																																																																					2
TCACCA		1																																																																																																																																																																				1
TCACCT	1																																																																																																																																																																					1
TCATAA			1																																																																																																																																																																			1
TCATCG	2																																																																																																																																																																					2
TCATCT	1																																																																																																																																																																					1
TCATTA	1		1																																																																																																																																																																			2
TCATTT	2	1		1																																																																																																																																																																		4
TCCATT	1																																																																																																																																																																					1
TCCTCA	2																																																																																																																																																																					2
TCCTCT	1																																																																																																																																																																					1
TCCTTC	1																																																																																																																																																																					1
TCCTTT	1																																																																																																																																																																					1
TCGTCA	1	1		1																																																																																																																																																																		3
TCGTGT				1																																																																																																																																																																		1
TCTATA	2																																																																																																																																																																					2
TCTCGA		1																																																																																																																																																																				1
TCTCTT	1				1																																																																																																																																																																	2
TCTGAG		1																																																																																																																																																																				1
TCTGTA			1																																																																																																																																																																			1
TCTTCA	2		4																																																																																																																																																																			6
TCTTCC	1																																																																																																																																																																					1
TCTTGA	1																																																																																																																																																																					1
TCTTTA	3	1																																																																																																																																																																				4
TCTTTC	2	2																																																																																																																																																																				4
TCTTTG	1	2																																																																																																																																																																				3
TCTTTT	1	1		1																																																																																																																																																																		3
TGAATC	1																																																																																																																																																																					1
TGACGA				1																																																																																																																																																																		1
TGATAA	1	1		1																																																																																																																																																																		3
TGATGG	1	1																																																																																																																																																																				2
TGATTT	1																																																																																																																																																																					1
TGCTCA	1																																																																																																																																																																					1
TGGAGT	1																																																																																																																																																																					1
TGGTAG	1																																																																																																																																																																					1
TGTATA	2																																																																																																																																																																					2
TGTATG										1																																																																																																																																																												1
TGTGTA	1																																																																																																																																																																					1
TGTGTT		1																																																																																																																																																																				1
TGTTGA	1																																																																																																																																																																					1
TGTTTA	1		1																																																																																																																																																																			2
TGTTTT	1																																																																																																																																																																					1
TTAAAA	1	1																																																																																																																																																																				2
TTAATG	2	1																																																																																																																																																																				3
TTAATT	1																																																																																																																																																																					1
TTACAA			1																																																																																																																																																																			1
TTACTA	1	2																																																																																																																																																																				3
TTAGGG	1																																																																																																																																																																					1
TTATAA	1																																																																																																																																																																					1
TTATAG	1																																																																																																																																																																					1
TTATAT	18	1		1	2	1																																																																																																																																																																23
TTATCA	1																																																																																																																																																																					1
TTATCC	1	1																																																																																																																																																																				2
TTATCT	4																																																																																																																																																																					4
TTATTC	2																																																																																																																																																																					2
TTATTG	8	3	1				1																																																																																																																																																															13
TTATTT	28	6		1																																																																																																																																																																		35
TTCAAT		1																																																																																																																																																																				1
TTCATC	1			1																																																																																																																																																																		2
TTCATG	1																																																																																																																																																																					1
TTCATT			2																																																																																																																																																																			2
TTCCTC	1																																																																																																																																																																					1
TTCCTT	3																																																																																																																																																																					3
TTCTCC	1	1																																																																																																																																																																				2
TTCTCT		1																																																																																																																																																																				1
TTCTTA	1	1																																																																																																																																																																				2
TTCTTT	8	1	1																																																																																																																																																																			10
TTGATG	1																																																																																																																																																																					1
TTGATT	2																																																																																																																																																																					2
TTGTCC		1																																																																																																																																																																				1
TTGTGA	1																																																																																																																																																																					1
TTGTTA	2	1																																																																																																																																																																				3
TTGTTC	4	1																																																																																																																																																																				5
TTGTTT		2																																																																																																																																																																				2
TTTAAA	1																																																																																																																																																																					1
TTTAGG	2	2																																																																																																																																																																				4
TTTATA	74	4	1				1																																																																																																																																																															80
TTTATG	13	5	3	1																																																																																																																																																																		22
TTTATT	37	6	2	1																																																																																																																																																																		46
TTTCAT	2																																																																																																																																																																					2
TTTCCT	2	1										1																																																																																																																																																										4
TTTCTA	1			1	1																																																																																																																																																																	3
TTTCTC	2																																																																																																																																																																					2
TTTCTG	2	1																																																																																																																																																																				3
TTTCTT	19	5	1																																																																																																																																																																			25
TTTGTA	3																																																																																																																																																																					3
TTTGTG									1																																																																																																																																																													1
TTTGTT	2	1																																																																																																																																																																				3
TTTTAA	6	2	1																																																																																																																																																																			9
TTTTAC	2																																																																																																																																																																					2
TTTTAT	38	7																																																																																																																																																																				45
TTTTCA	7			2																																																																																																																																																																		9
TTTTCC	6	1																																																																																																																																																																				7
TTTTCT	18	1																																																																																																																																																																				19
TTTTGT	2	1		1																																																																																																																																																																		4
TTTTTA	66	18	4	1		1																																																																																																																																																																90
TTTTTC	44	25	5	1	1																																																																																																																																																																	76
TTTTTG	10	5	2																																																																																																																																																																			17

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1613	1510	1343	1210	1142	1060	933	903	836	705	572	463	461	364	328	334	269	199	225	171	139	111	121	86	70	61	71	53	61	45	53	50	39	32	28	24	19	22	15	17	15	14	9	10	11	8	7	13	4	9	3	9	2	4	9	3	2	6		3	2	1	5	2	3		4	1		2	2	3		1		1	1				2		1			1										1							1			1															1		1																									1	15937
AC/GT	-	-	-	205	52	24	12	8	4	2	1																																																																																																																																																											308
AG/CT	-	-	-	28	13	8	5	4			1																																																																																																																																																											59
AT/AT	-	-	-	9317	5896	4630	4086	3728	3471	3278	2840	2677	2269	1802	1473	1198	940	719	590	420	285	195	164	102	75	43	31	20	18	11	1	3	1	2	3	1		1		1	1																																																																																																																													50292
CG/CG	-	-	-	1																																																																																																																																																																		1
AAC/GTT	-	-	92	45	34	17	11	16	7	6		3	2	3		2	2		1						1			1							1		1																																																																																																																																	245
AAG/CTT	-	-	156	68	40	23	14	12	4	3												1		1							1																																																																																																																																							323
AAT/ATT	-	-	2544	1434	1097	723	536	362	226	159	97	58	35	24	16	13	7	3	4	3	2	2	2	3	1	2	2																															1																																																																																																												7356
ACC/GGT	-	-	15	2	3		3																																																																																																																																																															23
ACG/CGT	-	-	8	3																																																																																																																																																																		11
ACT/AGT	-	-	100	73	16	6	6	6	2	1	1									1	1						1																																																																																																																																											214
AGC/CTG	-	-	2																																																																																																																																																																			2
AGG/CCT	-	-	10	5	3	1	1	1		1																																																																																																																																																												22
ATC/ATG	-	-	242	101	50	17	6	7	3	2	2					1		1	1									1				1																																																																																																																																						435
AAAC/GTTT	-	43	11	10	16		3	1	3		1																										1																																																																																																																																	89
AAAG/CTTT	-	64	23	14	11	3		3		2		1																																																																																																																																																										121
AAAT/ATTT	-	2959	1420	800	362	167	90	49	21	10	6	2	2		1																																																																																																																																																							5889
AACT/AGTT	-	2																																																																																																																																																																				2
AAGC/CTTG	-	1																																																																																																																																																																				1
AAGG/CCTT	-	3																																																																																																																																																																				3
AAGT/ACTT	-	3		1																																																																																																																																																																		4
AATC/ATTG	-	1	4	4																																																																																																																																																																		9
AATG/ATTC	-	11	7	3	3	1																																																																																																																																																																25
AATT/AATT	-	20	8	3																																																																																																																																																																		31
ACAT/ATGT	-	266	116	58	29	18	11	4	5	6	2	3	1	1		2		1		1	2	1	1			1		1		1	1		1	1	1			1		1	1													1				1																						1																																																								1								1																						543
AGAT/ATCT	-	4																																																																																																																																																																				4
AGCT/AGCT	-	1																																																																																																																																																																				1
ATCC/ATGG	-	2		1																																																																																																																																																																		3
ATGC/ATGC	-	1																																																																																																																																																																				1
AAAAC/GTTTT	103	39	13	1			1	1																																																																																																																																																														158
AAAAG/CTTTT	314	78	17	7	1																																																																																																																																																																	417
AAAAT/ATTTT	2152	721	305	75	22	11	9	3	2	4				1	1																																																																																																																																																							3306
AAACC/GGTTT		4																																																																																																																																																																				4
AAAGC/CTTTG	3				2																																																																																																																																																																	5
AAAGG/CCTTT	11	6		1			1																																																																																																																																																															19
AAAGT/ACTTT	1																																																																																																																																																																					1
AAATC/ATTTG	14	3	2	2																																																																																																																																																																		21
AAATG/ATTTC	52	16	7	1																																																																																																																																																																		76
AAATT/AATTT	81	24	7			2																																																																																																																																																																114
AACAC/GTGTT	6	1																																																																																																																																																																				7
AACAG/CTGTT	4	1																																																																																																																																																																				5
AACAT/ATGTT	19	1																																																																																																																																																																				20
AACCT/AGGTT	1																																																																																																																																																																					1
AACGG/CCGTT			1																																																																																																																																																																			1
AACTT/AAGTT	2																																																																																																																																																																					2
AAGAC/CTTGT			1																																																																																																																																																																			1
AAGAG/CTCTT	1																																																																																																																																																																					1
AAGAT/ATCTT	4	1	1																																																																																																																																																																			6
AAGCC/CTTGG	1																																																																																																																																																																					1
AAGGG/CCCTT	2	3																																																																																																																																																																				5
AATAC/ATTGT	18	11	4	1																																																																																																																																																																		34
AATAG/ATTCT	14	1		1																																																																																																																																																																		16
AATAT/ATATT	1486	280	101	55	25	9	7	8	2	7	6	5	2	4	3	4	1		1		1			2			1							1																																																																																																																																				2011
AATCT/AGATT	1																																																																																																																																																																					1
AATGC/ATTGC	1																																																																																																																																																																					1
AATGG/ATTCC	164	125	63	34	32	21	37	29	18	12	10	10	2	7	5	2		4	1	1	1				2																																																																																																																																													580
AATGT/ACATT	2																																																																																																																																																																					2
AATTC/AATTG	2	2	4																																																																																																																																																																			8
ACACC/GGTGT	3																																																																																																																																																																					3
ACATC/ATGTG	27																																																																																																																																																																					27
ACATG/ATGTC		1																																																																																																																																																																				1
ACTAT/AGTAT	5																																																																																																																																																																					5
AGATG/ATCTC	1																																																																																																																																																																					1
ATATC/ATATG	18	5	2	2																																																																																																																																																																		27
AAAAAC/GTTTTT	32	16	3	4	2				1	1																																																																																																																																																												59
AAAAAG/CTTTTT	216	68	17	8	4																		1																																																																																																																																															314
AAAAAT/ATTTTT	515	110	25	6	1	1																																																																																																																																																																658
AAAACG/CGTTTT	1																																																																																																																																																																					1
AAAAGG/CCTTTT	23	8		1						1		1																			1																																																																																																																																							35
AAAAGT/ACTTTT	8	2																																																																																																																																																																				10
AAAATC/ATTTTG	7	1	1																																																																																																																																																																			9
AAAATG/ATTTTC	40	10	9	4	2		1																																																																																																																																																															66
AAAATT/AATTTT	34	5	3																																																																																																																																																																			42
AAACAC/GTGTTT	3	1	2						1																																																																																																																																																													7
AAACAG/CTGTTT	3	1																																																																																																																																																																				4
AAACAT/ATGTTT	37	13	6	5	3	1																				1																																																																																																																																												66
AAACCC/GGGTTT	2																																																																																																																																																																					2
AAACCT/AGGTTT	14	3																																																																																																																																																																				17
AAACGG/CCGTTT		1																																																																																																																																																																				1
AAAGAC/CTTTGT	1	3																																																																																																																																																																				4
AAAGAG/CTCTTT	8	5	2		3																																																																																																																																																																	18
AAAGAT/ATCTTT	25	2	1																																																																																																																																																																			28
AAAGGG/CCCTTT	1	1																																																																																																																																																																				2
AAAGGT/ACCTTT	3																																																																																																																																																																					3
AAATAC/ATTTGT	12	4	2																																																																																																																																																																			18
AAATAG/ATTTCT	3	1		1	2																																																																																																																																																																	7
AAATAT/ATATTT	656	102	21	6	9	2	1																																																																																																																																																															797
AAATGC/ATTTGC	2	1																																																																																																																																																																				3
AAATGG/ATTTCC	6	2	2		2	2																																																																																																																																																																14
AAATGT/ACATTT	19	13		1																																																																																																																																																																		33
AAATTG/AATTTC		2																																																																																																																																																																				2
AAATTT/AAATTT	6	1																																																																																																																																																																				7
AACAAG/CTTGTT	11	3																																																																																																																																																																				14
AACAAT/ATTGTT	22	12	3	2			1																																																																																																																																																															40
AACACC/GGTGTT	6																																																																																																																																																																					6
AACACG/CGTGTT				2																																																																																																																																																																		2
AACACT/AGTGTT		1																																																																																																																																																																				1
AACAGC/CTGTTG	1																																																																																																																																																																					1
AACATC/ATGTTG	6	1						1																																																																																																																																																														8
AACATG/ATGTTC	5	2											1																																																																																																																																																									8
AACATT/AATGTT	6	3																																																																																																																																																																				9
AACCAT/ATGGTT	1																																																																																																																																																																					1
AACCCT/AGGGTT	3																																																																																																																																																																					3
AACGAT/ATCGTT	2			1																																																																																																																																																																		3
AACGTC/ACGTTG	1																																																																																																																																																																					1
AACTAG/AGTTCT	1																																																																																																																																																																					1
AACTAT/AGTTAT	4																																																																																																																																																																					4
AACTCC/AGTTGG	1																																																																																																																																																																					1
AAGAAT/ATTCTT	10	2																																																																																																																																																																				12
AAGACC/CTTGGT	2																																																																																																																																																																					2
AAGACG/CGTCTT	8																																																																																																																																																																					8
AAGAGC/CTCTTG		1			1																																																																																																																																																																	2
AAGAGG/CCTCTT	8	1																																																																																																																																																																				9
AAGATC/ATCTTG	2																																																																																																																																																																					2
AAGATG/ATCTTC	17	1	4	4																																																																																																																																																																		26
AAGCTC/AGCTTG			1																																																																																																																																																																			1
AAGGAC/CCTTGT		1																																																																																																																																																																				1
AAGGAG/CCTTCT	6	2																																																																																																																																																																				8
AAGGAT/ATCCTT	3	1																																																																																																																																																																				4
AAGGGG/CCCCTT		1																																																																																																																																																																				1
AAGGTC/ACCTTG		1																																																																																																																																																																				1
AAGGTG/ACCTTC	2	1																																																																																																																																																																				3
AAGTAG/ACTTCT	1																																																																																																																																																																					1
AATACC/ATTGGT	1																																																																																																																																																																					1
AATACT/AGTATT	2																																																																																																																																																																					2
AATAGG/ATTCCT	1																																																																																																																																																																					1
AATAGT/ACTATT	31	19	1	1																																																																																																																																																																		52
AATATC/ATATTG	1																																																																																																																																																																					1
AATATG/ATATTC	4	1	1																																																																																																																																																																			6
AATATT/AATATT	24	1																																																																																																																																																																				25
AATCAC/ATTGTG	1																																																																																																																																																																					1
AATCAT/ATGATT	4	2	1																																																																																																																																																																			7
AATCTG/AGATTC	1																																																																																																																																																																					1
AATGAC/ATTGTC				1																																																																																																																																																																		1
AATGAT/ATCATT	46	10	4	1																																																																																																																																																																		61
AATGCT/AGCATT		1																																																																																																																																																																				1
AATGGT/ACCATT	4	1																																																																																																																																																																				5
AATGTC/ACATTG	1																																																																																																																																																																					1
AATTAC/AATTGT		2	2																																																																																																																																																																			4
AATTAG/AATTCT	1																																																																																																																																																																					1
AATTAT/AATTAT	43	9	1																																																																																																																																																																			53
ACACAT/ATGTGT	1	4	1							1																																																																																																																																																												7
ACACTC/AGTGTG	2																																																																																																																																																																					2
ACAGAT/ATCTGT			1																																																																																																																																																																			1
ACATAT/ATATGT	56	8	7	1	1		1																																																																																																																																																															74
ACATGG/ATGTCC	1																																																																																																																																																																					1
ACATGT/ACATGT		1																																																																																																																																																																				1
ACCACG/CGTGGT	1																																																																																																																																																																					1
ACCACT/AGTGGT	1																																																																																																																																																																					1
ACCATC/ATGGTG	4	2																																																																																																																																																																				6
ACCTCC/AGGTGG	5																																																																																																																																																																					5
ACGATG/ATCGTC	4	1		2																																																																																																																																																																		7
ACTATG/AGTCAT	2																																																																																																																																																																					2
ACTCAG/AGTCTG		1																																																																																																																																																																				1
AGAGAT/ATCTCT	4	1																																																																																																																																																																				5
AGATAT/ATATCT	8				1																																																																																																																																																																	9
AGATCG/ATCTCG		1																																																																																																																																																																				1
AGCATG/ATGCTC	1																																																																																																																																																																					1
AGGATG/ATCCTC	2																																																																																																																																																																					2
ATATGC/ATATGC	3																																																																																																																																																																					3
ATCATG/ATCATG	3	1																																																																																																																																																																				4
ATCCCC/ATGGGG		1																																																																																																																																																																				1
