Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_001724265.1/fasta/hub_GCA_001724265.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              714
Total size of examined sequences (bp):           34916453
Total number of identified SSRs:                 20534
Number of SSR containing sequences:              670
Number of sequences containing more than 1 SSR:  642
Number of SSRs present in compound formation:    3268


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	41
2	1676
3	11922
4	122
5	428
6	6345

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1	1			2		1	1	1	1				1														1												11
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1	1	1		1	1									1																								6
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1		1			2	1	1	1																																7
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1	1	1	1	1	2		1	2				1	2					2																				1	17
AC	-	-	-	15	12	5	5		3			1		1	1		1		1		1			2		1	1		1		1																											52
AG	-	-	-	15	7	3		1	4		1				1							1	1				1																															35
AT	-	-	-	7	2	2	2	1	1																																																	15
CA	-	-	-	24	8	6	4	4	1	1	1		1	2	2	2	1	1							1	1		1																														61
CG	-	-	-	389	75	7	1																																																			472
CT	-	-	-	17	5	3	1	1		1		1		1	1					1	2																																					34
GA	-	-	-	11	1	4	2	2		1	2		2							1																																						26
GC	-	-	-	719	103	12	2																																																			836
GT	-	-	-	15	6	3	2	1		1	1								1	1								1	1						1																							34
TA	-	-	-	4	2				1																																																	7
TC	-	-	-	17	9	7	1	1	1	1	1	1				1	1																																									41
TG	-	-	-	24	11	6	3	2	3	1	2	1		1	1	1	2	1								2		1									1																					63
AAC	-	-	56	31	17	14	4	5	1	2	1	1		2		1	1							5		2	2																															145
AAG	-	-	4	3	1	1	1																																																			10
AAT	-	-	4																																																							4
ACA	-	-	55	19	8	12	6	4		3		1	1			1		1	1			1			1		1	1																						1								117
ACC	-	-	6	1	1	1																																																				9
ACG	-	-	53	27	14	6	3	1	2	1		1		2					1						1																																	112
ACT	-	-	2	3	2																																																					7
AGA	-	-	1					1																																																		2
AGC	-	-	124	74	46	29	25	12	8	4	2	2	3	2	1	4		1				2	1		1				1																													342
AGG	-	-	4				1																																																			5
AGT	-	-	2	1	1																																																					4
ATA	-	-	1		1																																																					2
ATC	-	-	6	2		2																																																				10
ATG	-	-	4	1		1	1					2																1																														10
CAA	-	-	123	58	24	19	11	9	4	6	3	2	2	1	2		2	2	3	1	2	1	1		1		2	3				1																										283
CAC	-	-	11	6	1																																																					18
CAG	-	-	426	213	150	95	61	45	32	26	12	11	8	6	3	2	2	5	3		1				1	2	1	3																														1108
CAT	-	-	8	1	1		3		1																																																	14
CCA	-	-	8	2	4																																																					14
CCG	-	-	401	171	74	44	20	9	7	3	2		1																																													732
CCT	-	-	12	5	1			1																																																		19
CGA	-	-	134	48	24	6	7	4	4	1																																																228
CGC	-	-	509	242	82	53	27	13	4	4	2	1			2																																											939
CGG	-	-	279	147	68	30	11	10	5		1		2	1	1			1																																								556
CGT	-	-	86	48	17	8	4		2	1	1								1																																							168
CTA	-	-	1																																																							1
CTC	-	-	17	4	1		1																																																			23
CTG	-	-	297	148	109	59	49	31	25	9	4	6	3	3	1	1	1	1	1	1	1	3	2				1	1																														757
CTT	-	-	12	1	1																																																					14
GAA	-	-	5	1		1																																																				7
GAC	-	-	116	39	24	10	2	6	1	2	3							1																																								204
GAG	-	-	18	8	2	2	3		1																																																	34
GAT	-	-	10	6	1	1			2				1																																													21
GCA	-	-	281	139	77	57	37	27	12	7	4	6	3	1	2			1	2			1	1	1					1																													660
GCC	-	-	526	235	98	52	23	10	3	2	3			1	1					1																																						955
GCG	-	-	784	349	184	105	24	17	3	3		1	2	1		1	1																																									1475
GCT	-	-	326	160	105	45	41	34	12	8	6	4	1	2	1	2			1	2	2	1	1	1			1																															756
GGA	-	-	7	1																																																						8
GGC	-	-	336	142	71	27	14	10	3	2	2			1		1																																										609
GGT	-	-	6	2	1					1																																																10
GTC	-	-	64	34	15	8	2	2																																																		125
GTG	-	-	4	1	1																																																					6
GTT	-	-	56	22	26	14	10	3	1	8	2		1	3		1		1										1		1																												150
TAA	-	-	2					1																																																		3
TAC	-	-	1		1		1																																																			3
TAG	-	-			1																																																					1
TAT	-	-	2	3																																																						5
TCA	-	-	21	8		2		1	1	1				1									2					1	1																1													40
TCC	-	-	22	2	3																																																					27
TCG	-	-	127	70	27	12	8	2		1																																																247
TCT	-	-	1	1			1																																																			3
TGA	-	-	9	5		1			1				1																																													17
TGC	-	-	216	96	70	39	31	18	7	6	7	7	6	1	4	1		2	2		1	2		1	1		1					1																										520
TGG	-	-	6	3	5																																																					14
TGT	-	-	99	41	28	26	14	5	9		1	2	1		2	1				2		1	3	2		1	6	1	2	1												1																249
TTA	-	-	1																																																							1
TTC	-	-	2				1									1																																										4
TTG	-	-	48	23	9	7	8	5	5			2			1	1							1		1		1	1	2																													115
AAAC	-		1																																																							1
AAAG	-	3																																																								3
AAAT	-	2																																																								2
AACA	-	2		1																																																						3
AAGA	-	1																																																								1
AAGC	-	1	1																																																							2
AAGT	-	1																																																								1
AATG	-					1																																																				1
ACAG	-	1																																																								1
ACCA	-	1																																																								1
ACCG	-	1		1																																																						2
ACGT	-	1				1																																																				2
AGAA	-	1																																																								1
AGCA	-	1							1																																																	2
AGGA	-	1																																																								1
AGTG	-		1																																																							1
ATCG	-	1																																																								1
ATGA	-	1	1																																																							2
ATTA	-		1																																																							1
ATTC	-																			2																																						2
CAAA	-	1		1																	1																																					3
CAAG	-		1																																																							1
CAGA	-	1		1																																																						2
CAGC	-		1																																																							1
CAGT	-	1	1																																																							2
CCGA	-		1																																																							1
CCGC	-		1																																																							1
CGAC	-	1												1																																												2
CGCC	-		1																																																							1
CGGG	-	1																																																								1
CGGT	-	1																																																								1
CGTA	-	1																																																								1
CTCA	-		1																																																							1
CTCG	-	2																																																								2
CTGG	-	2																																																								2
CTTG	-	2																																																								2
CTTT	-	1																																																								1
GAAA	-	1																																																								1
GAAG	-		1																																																							1
GACA	-																				1																																					1
GACC	-	2			1							1			1																																											5
GACG	-		1																																																							1
GAGC	-	1																																																								1
GAGT	-	1																																																								1
GATC	-					1																																																				1
GCAA	-	1																																																								1
GCCA	-	1																																																								1
GCGA	-	2																																																								2
GCTC	-	1																																																								1
GGAC	-	1																																																								1
GGCT	-	2																																																								2
GGGC	-	1																																																								1
GTAC	-	1		1																																																						2
GTCA	-			1																																																						1
GTCC	-	1		1									1																																													3
GTCG	-	1		1																																																						2
GTGC	-	1		1																																																						2
GTTG	-		1																																																							1
GTTT	-	1		1																																																						2
TACG	-	3	1																																																							4
TCAC	-	1																																																								1
TCAG	-	1																																																								1
TCCG	-	2																																																								2
TCGC	-			2																																																						2
TCGG	-	2																																																								2
TCGT	-																				1																																					1
TCTG	-																1																																									1
TGAC	-	1																																																								1
TGAG	-	1																																																								1
TGCT	-	1																																																								1
TGTC	-			1									1																																													2
TGTT	-	2																																																								2
TTAT	-	1																																																								1
TTCG	-																				1																																					1
TTGA	-					1																																																				1
TTGC	-	1																																																								1
TTGT	-	1	1																																																							2
TTTG	-	3						1													1																																					5
AAAAC	5																																																									5
AAAAT	4																																																									4
AAACA	6	1																																																								7
AAACG	1																																																									1
AAACT	1																																																									1
AAAGA	1																																																									1
AAAGC	1	2																																																								3
AAAGG	1																																																									1
AAATA	4																																																									4
AACAA	2																																																									2
AACAC		1																																																								1
AACAG		1																																																								1
AACCA	1																																																									1
AACTC	1																																																									1
AACTG	2																																																									2
AAGCA	2																																																									2
AAGCG	1																																																									1
AAGGC	1																																																									1
AATAA	2																																																									2
AATAC	1																																																									1
AATAT	1																																																									1
AATGA	1	1																																																								2
ACAAA	5	1																																																								6
ACACA	1																																																									1
ACAGC		1																																																								1
ACAGT	1																																																									1
ACCAA	1																																																									1
ACGCA	1																																																									1
ACTGA		1																																																								1
ACTGC									1																																																	1
ACTTG		1																																																								1
AGAAA	6																																																									6
AGAGA	1																																																									1
AGAGC	2																																																									2
AGATA	2																																																									2
AGCAA	1																																																									1
AGCAC	1																																																									1
AGCAG		1																																																								1
AGCTC	1																																																									1
AGGCG	1																																																									1
AGGCT						1																																																				1
AGGGC	1																																																									1
AGTCA	1																																																									1
AGTTC	1																																																									1
ATAAT	2																																																									2
ATCGA	1																																																									1
ATGCA	1																																																									1
ATGCT	1																																																									1
ATGTG	1																																																									1
ATGTT	1																																																									1
ATTAC	1																																																									1
ATTAT	1																																																									1
ATTGT	1																																																									1
CAAAA	3																																																									3
CAAAG	1																																																									1
CAATC	1																																																									1
CAATT	1																																																									1
CACAC		1																																																								1
CACAG						1																																																				1
CACCG	1																																																									1
CACCT	1																																																									1
CACGA	1																																																									1
CAGCC	3																																																									3
CAGCG	1																																																									1
CAGTG	2																																																									2
CATAA	1																																																									1
CATGT	1																																																									1
CATTT	1																																																									1
CCCCG	2																																																									2
CCCGC	1																																																									1
CCGCC	2																																																									2
CCGCG	7	1																																																								8
CCTCG			1																																																							1
CCTGA	1																																																									1
CGAAA	1																																																									1
CGACG	1																																																									1
CGACT		1																																																								1
CGAGG			1																																																							1
CGCAG	2																																																									2
CGCCA	1																																																									1
CGCCC	3	1																																																								4
CGCCG	13																																																									13
CGCGC	23	1																																																								24
CGCGG	5																																																									5
CGCGT		1																																																								1
CGGCG	5																																																									5
CGGGG	1																																																									1
CGTGA	1																																																									1
CTCCG	1																																																									1
CTCCT	1																																																									1
CTGCG	3																																																									3
CTGTG	3																																																									3
CTTCA		1																																																								1
CTTCC	1																																																									1
CTTCT	1																																																									1
CTTGA	1																																																									1
CTTGT	1																																																									1
CTTTC	1																																																									1
CTTTG		1																																																								1
CTTTT	1																																																									1
GAAAA	2																																																									2
GAAAG	1																																																									1
GAATA	1																																																									1
GACGC	1																																																									1
GACTT	1																																																									1
GAGAA	1																																																									1
GAGCA		1																																																								1
GAGGC		1																																																								1
GATAA	1																																																									1
GATAC	1																																																									1
GATGC	1																																																									1
GATTG		1																																																								1
GCAAA	2																																																									2
GCAAG	1																																																									1
GCACA	1																																																									1
GCAGA	1																																																									1
GCAGC	2																																																									2
GCAGT	1																																																									1
GCCCC	1																																																									1
GCCGC	12																																																									12
GCCTC	1																																																									1
GCGCA	3																																																									3
GCGCC	10																																																									10
GCGCG	24																																																									24
GCGCT	1																																																									1
GCGGC	23	1																																																								24
GCGGG	1	1																																																								2
GCGTT	1																																																									1
GCTAA	1																																																									1
GCTCA		1																																																								1
GCTCT	2																																																									2
GCTGA	1																																																									1
GCTGC	2																																																									2
GCTGT	1																																																									1
GCTTT	3																																																									3
GGCGC	14																																																									14
GGCGG	1																																																									1
GGCTG	1																																																									1
GGGCG	1																																																									1
GGGGC	2																																																									2
GGTCG	1																																																									1
GGTGT	1																																																									1
GTCGC	1																																																									1
GTCTC	1																																																									1
GTGCA	1																																																									1
GTTTC	2																																																									2
GTTTG	2																																																									2
GTTTT	2		1																																																							3
TAAAA	1																																																									1
TAATA	2																																																									2
TAATT	1																																																									1
TATAT	2																																																									2
TATCA	1																																																									1
TATGC	1																																																									1
TATTA		1																																																								1
TATTT	2																																																									2
TCAAG	1																																																									1
TCACT	1																																																									1
TCCAG	1																																																									1
TCCTC	2																																																									2
TCGCA	1																																																									1
TCGTT			1																																																							1
TCTCG	1																																																									1
TGACT	1																																																									1
TGAGC	1																																																									1
TGAGT	2																																																									2
TGATG		1																																																								1
TGATT	1																																																									1
TGCAA		1																																																								1
TGCAT		1																																																								1
TGCGC	1																																																									1
TGCGG	1																																																									1
TGCTA											1					1																																										2
TGCTT	1																																																									1
TGGAC	1																																																									1
TGGTT	1																																																									1
TGTCA	1																																																									1
TGTGA	1																																																									1
TGTGT	2	1																																																								3
TGTTG	1																																																									1
TGTTT	5	1																																																								6
TTATT	2																																																									2
TTCAT	1																																																									1
TTCGC	1																																																									1
TTCTT	1																																																									1
TTGAA	1																																																									1
TTGCG	2																																																									2
TTGCT	2	1																																																								3
TTGTT	5																																																									5
TTTAT	1																																																									1
TTTCA	1																																																									1
TTTGC	2																																																									2
TTTGG	1																																																									1
TTTGT	2																																																									2
TTTTA	3																																																									3
TTTTG	13																																																									13
AAAAAC	3																																																									3
AAAACA	2																																																									2
AAAATA	1																																																									1
AAACAA	2																																																									2
AAACAC	1																																																									1
AAATAA	1																																																									1
AAATTG	1																																																									1
AACAAA	2																																																									2
AACAAG	1																																																									1
AACAAT		1																																																								1
AACAGC	9	3																																																								12
AACGCA	1	1																																																								2
AACGCC	1																																																									1
AACGGC	9																																																									9
AACTAG	1																																																									1
AACTCG	1																																																									1
AAGAAA		1																																																								1
AAGAAC			1																																																							1
AAGACC	1																																																									1
AAGAGC	4																																																									4
AAGAGG	2																																																									2
AAGAGT	1																																																									1
AAGCTC	1																																																									1
AAGCTG			1																																																							1
AAGGCA		1																																																								1
AAGGCC	2																																																									2
AAGGGC	4																																																									4
AAGGGG	2																																																									2
AAGGGT	2																																																									2
AAGTCT	1																																																									1
AATGGC	1																																																									1
AATGGT										1																																																1
ACAACG	2																																																									2
ACAAGG	1																																																									1
ACACCA	1																																																									1
ACACCG	1																																																									1
ACACGC		1																																																								1
ACAGAC	1																																																									1
ACAGCA	20	11	2								1																																															34
ACAGCC		1																																																								1
ACAGCG	3																																																									3
ACAGCT	1																																																									1
ACAGGG	1																																																									1
ACATAA		1																																																								1
ACATCG	1																																																									1
ACATGG	1																																																									1
ACCAAC	1																																																									1
ACCAGC	1																																																									1
ACCCGC		1																																																								1
ACCGAG	1	1																																																								2
ACCGCC	1																																																									1
ACCGCG	1																																																									1
ACCGGC		1																																																								1
ACCGTG	7		1																																																							8
ACCGTT	1																																																									1
ACCTCG	2																																																									2
ACCTGC	1																																																									1
ACGACA	1																																																									1
ACGACT	2																																																									2
ACGAGG	4	1	1																																																							6
ACGATG	4																																																									4
ACGCAA	1																																																									1
ACGCAG	4	1																																																								5
ACGCAT	1																																																									1
ACGCCG	13	2																																																								15
ACGCGA	1																																																									1
ACGCGC	2																																																									2
ACGCTC	1																																																									1
ACGCTG	1																																																									1
ACGGAC	1																																																									1
ACGGCA	5	1	1																																																							7
ACGGCC	7		1																																																							8
ACGGCG	9	7				1																																																				17
ACGGCT		1																																																								1
ACGGGC	1																																																									1
ACGGGG	1																																																									1
ACGGTC	5																																																									5
ACTAGA	1																																																									1
ACTAGT		1																																																								1
ACTCGA	2																																																									2
ACTCGG	1	1	1																																																							3
ACTCGT	2																																																									2
ACTCTG	2																																																									2
ACTGAG	4																																																									4
ACTGCA	1																																																									1
ACTGCC					1																																																					1
ACTGCG	1																																																									1
ACTGCT	7																																																									7
ACTGGC	5																																																									5
ACTGGT	1																																																									1
AGAAAA	1																																																									1
AGAACA	1																																																									1
AGACGA	2																																																									2
AGACGC	2																																																									2
AGACTC	1																																																									1
AGACTG	1	2																																																								3
AGAGAA	1																																																									1
AGAGCA	3																																																									3
AGAGCC	7	1																																																								8
AGAGCT	7	4																																																								11
AGAGGA	2																																																									2
AGAGGC	1																																																									1
AGCAAC	8	1	1			1																																																				11
AGCAAG	2																																																									2
AGCAGA	3																																																									3
AGCAGG	9	4		1					1																																																	15
AGCAGT	6																																																									6
AGCATC	1																																																									1
AGCCAC	1																																																									1
AGCCAG	9	4		1				1																																																		15
AGCCAT	1																																																									1
AGCCCC	4																																																									4
AGCCCG	3																																																									3
AGCCGA	1																																																									1
AGCCGC	3																																																									3
AGCCGG	1																																																									1
AGCCTC	2	1																																																								3
AGCCTG	1																																																									1
AGCCTT	1																																																									1
AGCGAA	1																																																									1
AGCGAC	3																																																									3
AGCGAG	1																																																									1
AGCGCA	1																																																									1
AGCGCC	18	1																																																								19
AGCGCG	18	2																																																								20
AGCGGC	14	1	2	1																																																						18
AGCGGG	2																																																									2
AGCGGT	1																																																									1
AGCGTC		1																																																								1
AGCGTG	1																																																									1
AGCTAG	1			1					1																																																	3
AGCTCA	1																																																									1
AGCTCC	6	2																																																								8
AGCTCG	4	1																																																								5
AGCTCT	12	4	1	1																																																						18
AGCTGC	2																																																									2
AGCTGG	1																																																									1
AGCTGT	1																																																									1
AGGACG	2		1																																																							3
AGGAGC	1	1																																																								2
AGGCCA	1																																																									1
AGGCCC	1																																																									1
AGGCCG	9	1																																																								10
AGGCGC	8																																																									8
AGGCGG	3												1																																													4
AGGCTG	2	1																																																								3
AGGGCC	2	1																																																								3
AGGGCG	1																																																									1
AGGGGC	1																																																									1
AGGTCG	1																																																									1
AGTCAG	1																																																									1
AGTCCG	1																																																									1
AGTCGC	1																																																									1
AGTCGG	2																																																									2
AGTGAA	1																																																									1
AGTGCA	1																																																									1
AGTGCC	3	1																																																								4
AGTGCG	1																																																									1
AGTGGC	2																																																									2
AGTGGG	1																																																									1
AGTTCG	1																																																									1
ATAAAA	1																																																									1
ATAATC	1																																																									1
ATACGT	1																																																									1
ATAGCA				1																																																						1
ATCATT	1																																																									1
ATCCTC	1																																																									1
ATCGTC	1																																																									1
ATCTTC		1																																																								1
ATGAAC		1																																																								1
ATGACG	1																																																									1
ATGCAG	1																																																									1
ATGGGC		1				1																																																				2
ATGGGG	1																																																									1
ATGTAC	3																																																									3
ATGTCA	1																																																									1
ATGTCC	1																																																									1
ATGTGA	1																																																									1
ATTCGC	1																																																									1
ATTGTT		1																																																								1
ATTTGC	1																																																									1
ATTTGT	1																																																									1
ATTTTT	1																																																									1
CAACAG	49	13	4	1		1																																																				68
CAACAT	1																																																									1
CAACCT		1																																																								1
CAACGC	3	1																																																								4
CAACGG	14	6						1																																																		21
CAACGT	1																																																									1
CAACTG	1																																																									1
CAAGAA	1																																																									1
CAAGAG	1	1																																																								2
CAAGGA	2																																																									2
CAAGGC	2																																																									2
CAAGGG	5																																																									5
CAAGTC	1																																																									1
CAATAA	1																																																									1
CAATGC	1																																																									1
CACAGC	1																																																									1
CACCAG	1																																																									1
CACCAT	1																																																									1
CACCCG	2	1																																																								3
CACCGA	2																																																									2
CACCGC	2	1																																																								3
CACCGG	3																																																									3
CACCGT	1																																																									1
CACGAC	1																																																									1
CACGAG	1																																																									1
CACGCA	2	1																																																								3
CACGCC	1																																																									1
CACGCG	2																																																									2
CACGGA	3		1																																																							4
CACGGC	22	2	3	1																																																						28
CACGGG	1	1	1																																																							3
CACGGT	10																																																									10
CACTCC	1																																																									1
CACTCT		1																																																								1
CACTGC	3	1	1																																																							5
CACTGG	1																																																									1
CAGAAG	2																																																									2
CAGACA		1																																																								1
CAGACG	3			1																																																						4
CAGAGC	14		1		1																																																					16
CAGAGG	3	3																																																								6
CAGAGT	3	1																																																								4
CAGATG	2	1																																																								3
CAGCAA	71	11	3	5	2																																																					92
CAGCAC	7				1																																																					8
CAGCAT		1																																																								1
CAGCCA	1																																																									1
CAGCCC	1	1					1																																																			3
CAGCCG	4	2																																																								6
CAGCCT	12	4	1			1																																																				18
CAGCGA	6																																																									6
CAGCGC	36	5																																																								41
CAGCGG	29	7	1	1		1																																																				39
CAGCGT	5	1																																																								6
CAGCTC	3	3	1																																																							7
CAGCTG	1																																																									1
CAGGAG	2	1																																																								3
CAGGAT					1																																																					1
CAGGCA	1																																																									1
CAGGCC	4		1																																																							5
CAGGCG	21	3																																																								24
CAGGCT	3		1									1																																														5
CAGGGA	2	1																																																								3
CAGGGC	4	1																																																								5
CAGGGG	1	1																																																								2
CAGTAG	2	1																																																								3
CAGTCC	4					1																																																				5
CAGTCT	8	3		2																																																						13
CAGTGC	2																																																									2
CAGTGG	2																																																									2
CATCAG	2																																																									2
CATCCT	1																																																									1
CATCGG											1																																															1
CATCGT	1																																																									1
CATCTT	1																																																									1
CATGAA	1																																																									1
CATGCC	2																																																									2
CATGGA		1																																																								1
CATGGG	3																																																									3
CATGTT	1																																																									1
CCAAAG		1																																																								1
CCAACA	1																																																									1
CCAACG	2		1																																																							3
CCAAGG	1																																																									1
CCAAGT	1																																																									1
CCACCG	3																																																									3
CCACCT	1																																																									1
CCACGC	2																																																									2
CCACGG	21	11	1	2																																																						35
CCACTG	5	1																																																								6
CCAGAA		1																																																								1
CCAGAG	15	8	1																																																							24
CCAGCC			1																																																							1
CCAGCG	37	4																																																								41
CCAGCT	7	1																																																								8
CCAGGC		1					1																																																			2
CCAGGG	3																																																									3
CCAGTC	1																																																									1
CCAGTG	3																																																									3
CCATAT	1																																																									1
CCATCG	1																																																									1
CCATGC	3																																																									3
CCATGG	1																																																									1
CCCAGC	1																																																									1
CCCAGG	1								1																																																	2
CCCAGT		1																																																								1
CCCATC	1																																																									1
CCCATG	3	1																																																								4
CCCCAG	1																																																									1
CCCCCG	1		1																																																							2
CCCCGC	5																																																									5
CCCCGG	2																																																									2
CCCCTG	1	1																																																								2
CCCGAG	2		1																																																							3
CCCGCA	1																																																									1
CCCGCC	6																																																									6
CCCGCG	34	5	2																																																							41
CCCGCT	3		1																																																							4
CCCGTG	3																																																									3
CCCTGA	1																																																									1
CCCTGC	3																																																									3
CCCTGG	3																																																									3
CCCTGT	2																																																									2
CCCTTG	6						1																																																			7
CCGACA		1																																																								1
CCGACG	8	1																																																								9
CCGACT	1																																																									1
CCGAGC	3																																																									3
CCGAGG	4																																																									4
CCGAGT	2						1																																																			3
CCGATG	1																																																									1
CCGCAC	3		1																																																							4
CCGCAG	9	1																																																								10
CCGCCA	10																																																									10
CCGCCC	7	1																																																								8
CCGCCT	9	2																																																								11
CCGCGA	1																																																									1
CCGCGC	26	1																																																								27
CCGCGG	11	2																																																								13
CCGCGT	1																																																									1
CCGCTC	1																																																									1
CCGCTG	39	5	2																																																							46
CCGGAG	4																																																									4
CCGGCA	2		1																																																							3
CCGGCC	2	1																																																								3
CCGGCG	15																																																									15
CCGGCT	8																																																									8
CCGGGG	3																																																									3
CCGTCA	1	1																																																								2
CCGTCG	10	4																																																								14
CCGTGA	4	1																																																								5
CCGTGC	1	3																																																								4
CCGTGG	25	6	1	1																																																						33
CCGTGT	1																																																									1
CCGTTG	7	4	1																																																							12
CCTCAA	2																																																									2
CCTCAG	10	2			1																																																					13
CCTCAT	1	1																																																								2
CCTCCG	2	3																																																								5
CCTCGG	10																																																									10
CCTCGT	6	1																																																								7
CCTCTG	3																																																									3
CCTCTT		1																																																								1
CCTGAG	1		1																																																							2
CCTGCA	1																																																									1
CCTGCC	4																																																									4
CCTGCG	3	4																																																								7
CCTGCT	2																																																									2
CCTGGA	1																																																									1
CCTGGC	1	1																																																								2
CCTTGC	5		1	1																																																						7
CCTTGG	3																																																									3
CGAAGC	1																																																									1
CGACAA	1	1																																																								2
CGACAG	3																																																									3
CGACAT	1																																																									1
CGACGC	14	2					1																																																			17
CGACGG	25	6	2																																																							33
CGACTC	2																																																									2
CGAGAC	2																																																									2
CGAGAG	2																																																									2
CGAGCC	1																																																									1
CGAGCG	9	4	1																																																							14
CGAGCT	4																																																									4
CGAGGA	9	1			1																																																					11
CGAGGC	6	1																																																								7
CGAGTC		2																																																								2
CGAGTG	2																																																									2
CGAGTT	1																																																									1
CGATGA	4																																																									4
CGATGG	1																																																									1
CGCAAA	1																																																									1
CGCAAC	1																																																									1
CGCACA						1																																																				1
CGCACG	4	2																																																								6
CGCAGA	7					1																																																				8
CGCAGC	8																																																									8
CGCAGG	11	3																																																								14
CGCATT	1																																																									1
CGCCAA	4																																																									4
CGCCAC	3																																																									3
CGCCAG	26	11	1																																																							38
CGCCAT	1																																																									1
CGCCCA	3																																																									3
CGCCCC	7																																																									7
CGCCCG	35	7			1																																																					43
CGCCCT	1																																																									1
CGCCGA	11	2																																																								13
CGCCGG	9	2																																																								11
CGCCGT	27	5	1		1																																																					34
CGCCTC	2																																																									2
CGCCTG	7	1			1																																																					9
CGCGAA	2																																																									2
CGCGAC	3																																																									3
CGCGAG	9	2																																																								11
CGCGCA	4	2																																																								6
CGCGCC	22	2																																																								24
CGCGCT	14	1																																																								15
CGCGGA	1																																																									1
CGCGGC	22																																																									22
CGCGGG	29	4	2																																																							35
CGCGGT	3																																																									3
CGCGTG	1																																																									1
CGCTCA	1	1																																																								2
CGCTCC	2	1																																																								3
CGCTCG	5	2																																																								7
CGCTCT	1																																																									1
CGCTGA	3	2	1																																																							6
CGCTGC	33	4		1																																																						38
CGCTGG	18	9				1																																																				28
CGCTTG	1																																																									1
CGCTTT	1																																																									1
CGGAAA	1																																																									1
CGGACA	1																																																									1
CGGACG			1																																																							1
CGGACT	2		1																																																							3
CGGAGC	4																																																									4
CGGAGG	2																																																									2
CGGCAA	15	4	1	2																																																						22
CGGCAC	1																																																									1
CGGCAG	33	7																																																								40
CGGCCA	17	6																																																								23
CGGCCC	1																																																									1
CGGCCG	9																																																									9
CGGCCT	19	4																																																								23
CGGCGA	28	5	1																																																							34
CGGCGC	19	2																																																								21
CGGCGT	16	2	1																																																							19
CGGCTA		1																																																								1
CGGCTC	6		1								1																																															8
CGGCTG	5																																																									5
CGGGAC	1																																																									1
CGGGAG	1																																																									1
CGGGCA	1																																																									1
CGGGCG	11	3							1																																																	15
CGGGCT	2																																																									2
CGGGGA	1																																																									1
CGGGGC	1																																																									1
CGGGGG	2																																																									2
CGGGTG	1																																																									1
CGGTAG	1																																																									1
CGGTCA	5	1																																																								6
CGGTCC				1																																																						1
CGGTCG	2																																																									2
CGGTCT			1																																																							1
CGGTGC	1																																																									1
CGGTGG	1																																																									1
CGTAGC	1																																																									1
CGTCAA	1																																																									1
CGTCAG	2																																																									2
CGTCAT	1																																																									1
CGTCCT	15	3	1																																																							19
CGTCGC	28	5	1																																																							34
CGTCGG	4	2	1																																																							7
CGTCTG	5																																																									5
CGTCTT	1																																																									1
CGTGAC	3	1																																																								4
CGTGAG	3	2																																																								5
CGTGAT	1																																																									1
CGTGCC	1	1																																																								2
CGTGCG	4		1																																																							5
CGTGGC	6	5																																																								11
CGTGGG	1																																																									1
CGTGGT	1																																																									1
CGTTGC	9	1																																																								10
CGTTGG	1																																																									1
CGTTGT	1																																																									1
CTACAG	1																																																									1
CTACGA	1																																																									1
CTACTG	1																																																									1
CTAGAG	4		2																																																							6
CTAGCT	3	1																																																								4
CTCAAG	1	2																																																								3
CTCACG		1																																																								1
CTCACT	1																																																									1
CTCAGA	1																																																									1
CTCAGC	11	3			1																																																					15
CTCAGG	1																																																									1
CTCAGT		1																																																								1
CTCCAA	1																																																									1
CTCCAG	5	1								1																																																7
CTCCCG	1																																																									1
CTCCGA	3		1																																																							4
CTCCGC	4																																																									4
CTCCGG	5																																																									5
CTCCTG	3																																																									3
CTCGAG	5																																																									5
CTCGCA	1																																																									1
CTCGCG	18	3																																																								21
CTCGCT	2																																																									2
CTCGGA	4	1	1																																																							6
CTCGGC	8																																																									8
CTCGGG	4																																																									4
CTCGGT	1																																																									1
CTCGTC	5	1																																																								6
CTCTAG	6	3	1																																																							10
CTCTCG	2																																																									2
CTCTGC	4	2								1																																																7
CTCTGG	9	3		1	1																																																					14
CTCTTC	1																																																									1
CTCTTG	2	1																																																								3
CTGACG	1																																																									1
CTGAGA	6	2																																																								8
CTGAGC	1				1																																																					2
CTGAGG	8	3	1																																																							12
CTGAGT		1																																																								1
CTGATG	2																																																									2
CTGCAC		1																																																								1
CTGCAG	2																																																									2
CTGCAT	3	1																																																								4
CTGCCA	2						1																																																			3
CTGCCC					1																																																					1
CTGCCG	29	1																																																								30
CTGCCT	4	1	1																																																							6
CTGCGA	1																																																									1
CTGCGC	18	5		1																																																						24
CTGCGG	10		1																																																							11
CTGCGT	5	2																																																								7
CTGCTA	2																																																									2
CTGCTC	10		1																																																							11
CTGCTT	1																																																									1
CTGGAG	1	2																																																								3
CTGGCA	4	1																																																								5
CTGGCC	4	1																																																								5
CTGGCG	38	14	7	1																																																						60
CTGGCT	17	3	1																																																							21
CTGGGA		1																																																								1
CTGGGC		1																																																								1
CTGGGG					1																																																					1
CTGGTG	1																																																									1
CTGGTT	4																																																									4
CTGTCG	1																																																									1
CTGTGG	2																																																									2
CTGTTG	26	6	3																																																							35
CTTCAC	1																																																									1
CTTCCT	1																																																									1
CTTCTC	1																																																									1
CTTGCA	1																																																									1
CTTGCC	3	1																																																								4
CTTGCT	4																																																									4
CTTGGC	3	1																																																								4
CTTGGG	1																																																									1
CTTGTC		1																																																								1
CTTTTT	1																																																									1
GAAAAC	1																																																									1
GAACCA	1																																																									1
GAAGAC		1																																																								1
GAAGCA	1																																																									1
GAATGC	1																																																									1
GAATGT	1																																																									1
GACAAG	1				1																																																					2
GACACA	1																																																									1
GACACC	1																																																									1
GACAGC	1																																																									1
GACCGA	2	1																																																								3
GACCGC	3																																																									3
GACCGG	1																																																									1
GACCGT	7	1				1																																																				9
GACGAG	27	9	1																																																							37
GACGAT	5	1																																																								6
GACGCA	5	1	1																																																							7
GACGCC	19	1	1																																																							21
GACGCG	4	1																																																								5
GACGCT	5	1		1		1																																																				8
GACGGA	1																																																									1
GACGGC	14	2																																																								16
GACGGT	1																																																									1
GACGTC	1																																																									1
GACTCA	1																																																									1
GACTCC	2																																																									2
GACTCG	4	1	1																																																							6
GACTGA	11		1																																																							12
GACTGC	2																																																									2
GACTGG	5		1	1																																																						7
GACTGT	1																																																									1
GAGAAA	1																																																									1
GAGAAG	1																																																									1
GAGACA	1																																																									1
GAGACT	2																																																									2
GAGAGC	1	1																																																								2
GAGCAA	4																																																									4
GAGCAG	14	2	1		1																																																					18
GAGCCA	9	2	1	1																																																						13
GAGCCC	2																																																									2
GAGCCG	17	1		1																																																						19
GAGCCT		1																																																								1
GAGCGA	1																																																									1
GAGCGC	15	2	1																																																							18
GAGCGG	2																																																									2
GAGCGT	1				1																																																					2
GAGCTA	6	3																																																								9
GAGCTC	7																																																									7
GAGCTG	11	1	1																																																							13
GAGCTT	3		1																																																							4
GAGGAC	17	7																																																								24
GAGGAT	3																																																									3
GAGGCA	2																																																									2
GAGGCC	28	3																																																								31
GAGGCG	10	2																																																								12
GAGGCT	17	5																																																								22
GAGGGC	1	1																																																								2
GAGGTA	1																																																									1
GAGGTC	1																																																									1
GAGTAC	1																																																									1
GAGTAT	1																																																									1
GAGTCA	2																																																									2
GAGTCC	2	2																																																								4
GAGTCG	5																																																									5
GAGTCT	1																																																									1
GAGTGC	1																																																									1
GAGTGG	1																																																									1
GAGTGT		1																																																								1
GAGTTG	1																																																									1
GATGAC	4		1																																																							5
GATGCT	1																																																									1
GATGGT	1																																																									1
GATTCG	1																																																									1
GCAACA	23	5	3	1			1																																																			33
GCAACG	10	1	1																																																							12
GCAACT	1																																																									1
GCAAGA	5																																																									5
GCAAGC	1																																																									1
GCAAGG	1	1																																																								2
GCAATG	1																																																									1
GCACAC	2																																																									2
GCACCA	2	1																																																								3
GCACGG		1																																																								1
GCACTC	1	1																																																								2
GCACTG	1	1																																																								2
GCAGAA	2																																																									2
GCAGAC	6	3																																																								9
GCAGAG	4	2																																																								6
GCAGAT	2	1																																																								3
GCAGCC	7																																																									7
GCAGCG	55	11	4		1																																																					71
GCAGCT	4																																																									4
GCAGGA	4																																																									4
GCAGGC	15	4	1																																																							20
GCAGGG	1	1		1																																																						3
GCAGTG	14	2	2																																																							18
GCAGTT	1																																																									1
GCATCG	1																																																									1
GCATCT	1	1																																																								2
GCATGG	1	1																																																								2
GCATTA	1																																																									1
GCCAAC	1																																																									1
GCCAAG	3		1																																																							4
GCCACC	1																																																									1
GCCACG	14	1	2	2																																																						19
GCCACT	7	1																																																								8
GCCAGA	15	1	1																																																							17
GCCAGC	34	6	1																																																							41
GCCAGG	5																																																									5
GCCAGT	6																																																									6
GCCCAC	1			1																																																						2
GCCCAG	5																																																									5
GCCCAT	3	1	1			1																																																				6
GCCCCA	1	1																																																								2
GCCCCC	3																																																									3
GCCCCG			1																																																							1
GCCCCT	2																																																									2
GCCCGA	1	1																																																								2
GCCCGC	25	3	2	2																																																						32
GCCCTC	1																																																									1
GCCCTG	4	1																																																								5
GCCCTT	7																																																									7
GCCGAA	2																																																									2
GCCGAC	14	1																																																								15
GCCGAG	16	5																																																								21
GCCGCA	17	5																																																								22
GCCGCG	29	2																																																								31
GCCGCT	61	16			1																																																					78
GCCGGA	15	3																																																								18
GCCGGC	7																																																									7
GCCGGG	2																																																									2
GCCGGT	3																																																									3
GCCGTA	1																																																									1
GCCGTC	9	1		1																																																						11
GCCGTG	27	6	1		1				1																																																	36
GCCGTT	17		2																																																							19
GCCTCA	13	2																																																								15
GCCTCC	4	1										1																																														6
GCCTCG	18	1																																																								19
GCCTCT	3			2																																																						5
GCCTGA	7	1	1							1																																																10
GCCTGC	14	3																																																								17
GCCTGG	5	1	1			1																																																				8
GCCTGT	3																																																									3
GCCTTG	2																																																									2
GCCTTT	1																																																									1
GCGAAC	1																																																									1
GCGACA	1																																																									1
GCGACG	20	5			1																																																					26
GCGACT	1																																																									1
GCGAGA	1																																																									1
GCGAGC	23	1																																																								24
GCGAGG	1																																																									1
GCGAGT	3																																																									3
GCGATG	1																																																									1
GCGCAA	1																																																									1
GCGCAC	5																																																									5
GCGCAG	22	5			1																																																					28
GCGCCA	29	4	2	1	1	1																																																				38
GCGCCC	35	4																																																								39
GCGCCG	23	1																																																								24
GCGCCT	6	2	1																																																							9
GCGCGA	16	3																																																								19
GCGCGG	27	1			1																																																					29
GCGCGT	6																																																									6
GCGCTC	13		1																																																							14
GCGCTG	26	10	1	2																																																						39
GCGGAC	1																																																									1
GCGGAG	9	2	1																																																							12
GCGGAT	1																																																									1
GCGGCA	53	8	1	1						1																																																64
GCGGCC	13	2																																																								15
GCGGCT	9		1																																																							10
GCGGGA	3	1																																																								4
GCGGGC	29	3	2																																																							34
GCGGGG	3																																																									3
GCGGTC	1																																																									1
GCGGTG	2																																																									2
GCGGTT	1																																																									1
GCGTCA	7	2																																																								9
GCGTCG	19	7																																																								26
GCGTCT	11	1		1																																																						13
GCGTGC	1	1																																																								2
GCGTGG	3																																																									3
GCGTGT	1																																																									1
GCGTTG	4	1																																																								5
GCTAAG	1																																																									1
GCTACA	1																																																									1
GCTAGA		2	1																																																							3
GCTCAC	1																																																									1
GCTCAG	4																																																									4
GCTCCA	5																																																									5
GCTCCC	2																																																									2
GCTCCG	2																																																									2
GCTCCT	2	3	1																																																							6
GCTCGA	5																																																									5
GCTCGC	5	1																																																								6
GCTCGG	1																																																									1
GCTCTA	6	2	1																																																							9
GCTCTC	2																																																									2
GCTCTG	4	3							1																																																	8
GCTCTT	1	1																																																								2
GCTGAC	4																																																									4
GCTGAG	13	4	3	1																																																						21
GCTGAT	3	1								1																																																5
GCTGCA	5																																																									5
GCTGCC	35	4	1																																																							40
GCTGCG	18	3																																																								21
GCTGGA	9		1				1																																																			11
GCTGGC	18	4																																																								22
GCTGGT	1	1																																																								2
GCTGTC		1																																																								1
GCTGTT	19	7																																																								26
GCTTCA	1																																																									1
GCTTCC			1																																																							1
GCTTCT		2																																																								2
GGACGA	5																																																									5
GGACGC	2	1																																																								3
GGACTC	3																																																									3
GGACTG	2																																																									2
GGAGCA	3																																																									3
GGAGCC	5	2																																																								7
GGAGCG	3																																																									3
GGAGCT	6	1							1																																																	8
GGAGGC	2																																																									2
GGAGTC	2																																																									2
GGCAAC	9		1																																																							10
GGCAAG	2	2	2																																																							6
GGCACA	1	1																																																								2
GGCACC	1																																																									1
GGCACG	2																																																									2
GGCACT	1																																																									1
GGCAGA	2		1																																																							3
GGCAGC	34	3	3	1																																																						41
GGCAGG	1																																																									1
GGCAGT	5	1	1	1																																																						8
GGCATG	5	2	1																																																							8
GGCCAA	1																																																									1
GGCCAC	10	2	1		1																																																					14
GGCCAG	3																																																									3
GGCCCA	1	1																																																								2
GGCCCC	1																																																									1
GGCCCT	1																																																									1
GGCCGA	7	1																																																								8
GGCCGC	7		1																																																							8
GGCCGG	2																																																									2
GGCCGT	8	1																																																								9
GGCCTC	6																																																									6
GGCCTG	1																																																									1
GGCCTT	13																																																									13
GGCGAC	10	2																																																								12
GGCGAG	2	1	1			1																																																				5
GGCGCA	15	1					1																																																			17
GGCGCC	13	1																																																								14
GGCGCG	53	5	1	3	2	1	1																																																			66
GGCGCT	41	4																																																								45
GGCGGA	4	1																																																								5
GGCGGG	6	1	1																																																							8
GGCGGT	5	1				1																																																				7
GGCGTC	11	1	1																																																							13
GGCGTG	2																																																									2
GGCGTT	3		1																																																							4
GGCTAC	2																																																									2
GGCTCA	2	1										1																																														4
GGCTCC	6	1																																																								7
GGCTCG	4																																																									4
GGCTCT	15	2						1																																																		18
GGCTGA	5																																																									5
GGCTGC	6	1																																																								7
GGCTGG	2																																																									2
GGCTTC	1																																																									1
GGCTTG	1																																																									1
GGGACA	2																																																									2
GGGCAA	1										1																																															2
GGGCAC	1																																																									1
GGGCAG	1	1																																																								2
GGGCCA	1																																																									1
GGGCCG	1																																																									1
GGGCCT	1																																																									1
GGGCGA	1																																																									1
GGGCGC	11	3			1				1																																																	16
GGGCGG	2	1																																																								3
GGGCGT		1																																																								1
GGGCTC	1																																																									1
GGGGAC	1																																																									1
GGGGCA	1	2																																																								3
GGGGCG	5																																																									5
GGGGGC	2	1																																																								3
GGTACG	1																																																									1
GGTCAA	1																																																									1
GGTCAC	1	1																																																								2
GGTCCA	1																																																									1
GGTCGA	1																																																									1
GGTCTC	1																																																									1
GGTCTT	1																																																									1
GGTGAA	1																																																									1
GGTGCG		1																																																								1
GGTGCT	2																																																									2
GGTGGC	2	1	1																																																							4
GGTTAC	1																																																									1
GTACAT	1																																																									1
GTACTA	2	1																																																								3
GTAGCA	1																																																									1
GTAGCT	1																																																									1
GTATTT	1																																																									1
GTCAAG	1																																																									1
GTCACG	2																																																									2
GTCAGA	1																																																									1
GTCAGC	1									1																																																2
GTCATC	2																																																									2
GTCCCA	1		1																																																							2
GTCCGA	4																																																									4
GTCCGC	2																																																									2
GTCCGT		1																																																								1
GTCCTC	10	1																																																								11
GTCCTT	1	1																																																								2
GTCGAC	1																																																									1
GTCGAG	1																																																									1
GTCGCC	17	4	2																																																							23
GTCGCG	2																																																									2
GTCGCT	2	1																																																								3
GTCGGA			1																																																							1
GTCGGC	5	1		1																																																						7
GTCGGT	1																																																									1
GTCGTA	1																																																									1
GTCTCA	2																																																									2
GTCTGC	5	2																																																								7
GTCTTT	1																																																									1
GTGACC	10	1																																																								11
GTGACG	1																																																									1
GTGATG	1																																																									1
GTGCAA	1																																																									1
GTGCAG	1																																																									1
GTGCCA		2		1																																																						3
GTGCCC	2				1																																																					3
GTGCGA	2																																																									2
GTGCGC	5																																																									5
GTGCGG	3																																																									3
GTGCGT	1																																																									1
GTGCTA	1																																																									1
GTGGCA	6																																																									6
GTGGCC	18	7	1			1	1																																																			28
GTGGCG	5																																																									5
GTGGGA	1																																																									1
GTGTCG	1																																																									1
GTGTCT	1																																																									1
GTGTGC	2																																																									2
GTTATT		1																																																								1
GTTCTG			1																																																							1
GTTGAA	1																																																									1
GTTGCA	1																																																									1
GTTGCC	8	2	1																																																							11
GTTGCG	1																																																									1
GTTGCT	23	5																																																								28
GTTGGC	6																																																									6
GTTGTG	1																																																									1
GTTTTT	1																																																									1
TAACAA	2																																																									2
TAACAG	1																																																									1
TACAGC	1																																																									1
TACATG	3																																																									3
TACGAG	1																																																									1
TACTAG	2																																																									2
TACTGT	1																																																									1
TAGAGC	2				1																																																					3
TAGAGT	1																																																									1
TAGCAG	1																																																									1
TAGCCG	1																																																									1
TAGCTC	3																																																									3
TAGTAC	1																																																									1
TATACT	1																																																									1
TATTGC	1																																																									1
TCAACG	1																																																									1
TCAAGC	1																																																									1
TCACGC	1																																																									1
TCACGG	7	1	1																																																							9
TCACTC	1																																																									1
TCAGAA	1																																																									1
TCAGAC	1																																																									1
TCAGAG	1																																																									1
TCAGCA		2																																																								2
TCAGCC	3	3	1		2																																																					9
TCAGCG	11	5	1																																																							17
TCAGGC	1																																																									1
TCAGGG									1																																																	1
TCAGTC	2																																																									2
TCAGTG	1																																																									1
TCATCC	1	1																																																								2
TCATCG	10																																																									10
TCCAGC	2	2																																																								4
TCCCAG	1																																																									1
TCCCCG	1																																																									1
TCCGAC	2																																																									2
TCCGAG	4																																																									4
TCCGCC	4																																																									4
TCCGCG	3																																																									3
TCCGGC	4																																																									4
TCCTCA	4																																																									4
TCCTCG	17	3	2	1																																																						23
TCCTCT	1																																																									1
TCCTGC	4		1																																																							5
TCGAAG	1																																																									1
TCGACG	1																																																									1
TCGACT	1																																																									1
TCGAGC	3																																																									3
TCGAGG	1																																																									1
TCGATG	3																																																									3
TCGCAC	2																																																									2
TCGCAG	2																																																									2
TCGCCC	1																																																									1
TCGCCG	18	7	1																																																							26
TCGCGC	7	2																																																								9
TCGCGG	7																																																									7
TCGCTT	1																																																									1
TCGGAC	2	1																																																								3
TCGGAG	1																																																									1
TCGGCC	4	2																																																								6
TCGGCG	13	2	2	1																																																						18
TCGGGC	1																																																									1
TCGGTG	1	1																																																								2
TCGTCA	6																																																									6
TCGTCC	31	6	3																																																							40
TCGTCT	2																																																									2
TCGTTG	3																																																									3
TCTAGA	1																																																									1
TCTAGC	5	1	2																																																							8
TCTAGT		1																																																								1
TCTATT	1																																																									1
TCTCAG	1																																																									1
TCTGAA	1																																																									1
TCTGCA	1																																																									1
TCTGCC	1																																																									1
TCTGCG	4	3																																																								7
TCTGCT	1																																																									1
TCTGGC	1	1	3																																																							5
TCTTCA			1																																																							1
TCTTCG	3																																																									3
TCTTGC	5																																																									5
TCTTGG	1																																																									1
TGAACA	1																																																									1
TGAAGT	1																																																									1
TGACCG	8	3																																																								11
TGACGA	3	1																																																								4
TGACGC	2		1																																																							3
TGAGAG	1																																																									1
TGAGCC	1																																																									1
TGAGCG	2		1																																																							3
TGAGGA	2																																																									2
TGAGGC	3	1	1																																																							5
TGAGGG	1																																																									1
TGAGTT	1																																																									1
TGATGC		1																																																								1
TGCAGA	1																																																									1
TGCAGC	4																																																									4
TGCAGG	1																																																									1
TGCATT		1																																																								1
TGCCAC	3																																																									3
TGCCAG	6																																																									6
TGCCAT	1																																																									1
TGCCCT	2																																																									2
TGCCGC	20	5	2	1	1																																																					29
TGCCGG	2																																																									2
TGCCGT	11	2	1		1	1																																																				16
TGCGAA	1																																																									1
TGCGCC	5	1																																																								6
TGCGCG	2																																																									2
TGCGGA	1																																																									1
TGCGGC	2																																																									2
TGCGGG	2																																																									2
TGCGTC	1	1																																																								2
TGCGTG		1																																																								1
TGCGTT	1																																																									1
TGCTAC	1																																																									1
TGCTCC	1	1																																																								2
TGCTCG	1																																																									1
TGCTCT	5	1																																																								6
TGCTGA	7	1																																																								8
TGCTGG	5	2			1		1																																																			9
TGCTGT	72	7	4		1		1																																																			85
TGGAGC	3		1																																																							4
TGGCAC	5																																																									5
TGGCAG	4	1																																																								5
TGGCCA	1																																																									1
TGGCCC	1		1																																																							2
TGGCCG	6	1			1																																																					8
TGGCGC	9	3																																																								12
TGGCGG	3	1																																																								4
TGGCGT	2	1	1			1																																																				5
TGGCTC	5	1		1																																																						7
TGGGAA	1																																																									1
TGGGAC	2																																																									2
TGGGCC	1																																																									1
TGGGCG	1																																																									1
TGGGCT	1																																																									1
TGGGGC	2																																																									2
TGGTCG	1																																																									1
TGGTTC	1																																																									1
TGTACA	2																																																									2
TGTAGC	1																																																									1
TGTCCC	1																																																									1
TGTCGC	3																																																									3
TGTCGG	1																																																									1
TGTGCG	1																																																									1
TGTGCT	1																																																									1
TGTGGC	1																																																									1
TGTGTA	1																																																									1
TGTGTC	1																																																									1
TGTTAT			1																																																							1
TGTTGA	2																																																									2
TGTTGC	39	2	6	2																																																						49
TGTTGG	2																																																									2
TGTTTG	1																																																									1
TGTTTT	3																																																									3
TTACCC		1																																																								1
TTAGCG	1																																																									1
TTATTG	1																																																									1
TTATTT	1																																																									1
TTCATG	1																																																									1
TTCTCT	1																																																									1
TTCTGA	1																																																									1
TTCTGC	1																																																									1
TTCTTG		1											1																																													2
TTGACT	1																																																									1
TTGCCC	3																																																									3
TTGCCG	4	1	2																																																							7
TTGCTC	3																																																									3
TTGCTG	16	6	1																																																							23
TTGGCA		1																																																								1
TTGGCG	1																																																									1
TTGTCA	1																																																									1
TTGTGT	1																																																									1
TTGTTA	1																																																									1
TTGTTT	1	1																																																								2
TTTCTC	1																																																									1
TTTGCG		1																																																								1
TTTGCT	1																																																									1
TTTGGG	1		1																																																							2
TTTGTT	3		1																																																							4
TTTTCT	1																																																									1
TTTTGT	2																																																									2
TTTTTG	1																																																									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	2	2	1	1	3	2	1	2	3	1			1	3					2									1											1	28
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1		2	1	1	2	2	2	1								1																								13
AC/GT	-	-	-	78	37	20	14	7	7	3	4	2	1	4	4	3	4	2	2	1	1			2	1	4	1	3	2		1				1		1																					210
AG/CT	-	-	-	60	22	17	4	5	5	3	4	2	2	1	2	1	1			2	2	1	1				1																															136
AT/AT	-	-	-	11	4	2	2	1	2																																																	22
CG/CG	-	-	-	1108	178	19	3																																																			1308
AAC/GTT	-	-	437	194	112	92	53	31	20	19	7	8	5	6	5	5	3	4	4	3	2	3	5	7	3	3	12	7	4	2		1										1								1								1059
AAG/CTT	-	-	25	6	2	2	3	1								1																																										40
AAT/ATT	-	-	10	3	1			1																																																		15
ACC/GGT	-	-	41	15	13	1				1																																																71
ACG/CGT	-	-	580	266	121	50	26	15	9	6	4	1		2				1	2						1																																	1084
ACT/AGT	-	-	6	4	5		1																																																			16
AGC/CTG	-	-	1670	830	557	324	244	167	96	60	35	36	24	15	12	10	3	10	9	3	5	9	5	3	3	2	4	4	2			1																										4143
AGG/CCT	-	-	80	20	7	2	5	1	1																																																	116
ATC/ATG	-	-	58	23	2	7	4	1	5	1		2	2	1									2					2	1																1													112
CCG/CGG	-	-	2835	1286	577	311	119	69	25	14	10	2	5	4	4	2	1	1		1																																						5266
AAAC/GTTT	-	10	2	3				1													2																																					18
AAAG/CTTT	-	7																																																								7
AAAT/ATTT	-	3																																																								3
AACC/GGTT	-	1	1																																																							2
AACG/CGTT	-																				2																																					2
AAGC/CTTG	-	7	2						1																																																	10
AAGG/CCTT	-	1	1																																																							2
AAGT/ACTT	-	1																																																								1
AATC/ATTG	-					1																																																				1
AATG/ATTC	-	1	1			1														2																																						5
AATT/AATT	-		1																																																							1
ACAG/CTGT	-	2		2									1				1				1																																					7
ACCG/CGGT	-	8	1	2	1							1		1	1																																											15
ACGC/CGTG	-	1		1																																																						2
ACGG/CCGT	-	4	1	1									1																																													7
ACGT/ACGT	-	6	1	1		1																																																				9
ACTC/AGTG	-	3	2																																																							5
ACTG/AGTC	-	3	1	1																																																						5
AGCC/CTGG	-	5	1																																																							6
AGCG/CGCT	-	6		2																																																						8
ATCG/ATCG	-	1				1																																																				2
CCCG/CGGG	-	2	2																																																							4
AAAAC/GTTTT	48	3	1																																																							52
AAAAG/CTTTT	11																																																									11
AAAAT/ATTTT	19																																																									19
AAACC/GGTTT	6																																																									6
AAACG/CGTTT	4		1																																																							5
AAACT/AGTTT	1																																																									1
AAAGC/CTTTG	15	4																																																								19
AAAGG/CCTTT	3																																																									3
AAATC/ATTTG	1																																																									1
AAATG/ATTTC	4	1																																																								5
AAATT/AATTT	1																																																									1
AACAC/GTGTT	4	2																																																								6
AACAG/CTGTT		1																																																								1
AACAT/ATGTT	2																																																									2
AACGC/CGTTG	4																																																									4
AACTC/AGTTG	3																																																									3
AACTG/AGTTC	3	1																																																								4
AAGAC/CTTGT	1																																																									1
AAGAG/CTCTT	3																																																									3
AAGAT/ATCTT	3																																																									3
AAGCG/CGCTT	2																																																									2
AAGCT/AGCTT	1																																																									1
AAGGC/CCTTG	2																																																									2
AAGGG/CCCTT	1																																																									1
AAGTC/ACTTG	5	1																																																								6
AAGTG/ACTTC	1	1																																																								2
AATAC/ATTGT	2																																																									2
AATAG/ATTCT	1																																																									1
AATAT/ATATT	8	1																																																								9
AATCC/ATTGG	1	1																																																								2
AATCG/ATTCG	1																																																									1
AATGC/ATTGC	1	2																																																								3
AATGT/ACATT	1																																																									1
AATTC/AATTG	2																																																									2
ACACC/GGTGT	1	1																																																								2
ACACG/CGTGT	1																																																									1
ACAGC/CTGTG	6	1				1																																																				8
ACAGT/ACTGT	1																																																									1
ACATC/ATGTG	2	1																																																								3
ACATG/ATGTC	2																																																									2
ACCCG/CGGGT	1																																																									1
ACCGC/CGGTG	2																																																									2
ACCTC/AGGTG	1																																																									1
ACCTG/AGGTC	1																																																									1
ACGAG/CGTCT	2																																																									2
ACGAT/ATCGT	1																																																									1
ACGCC/CGTGG	1																																																									1
ACGCG/CGCGT	3	1																																																								4
ACGTC/ACGTG	1																																																									1
ACTCG/AGTCG		1																																																								1
ACTGC/AGTGC	4								1																																																	5
ACTGG/AGTCC	2																																																									2
AGAGC/CTCTG	5	2																																																								7
AGAGG/CCTCT	3																																																									3
AGCAT/ATGCT	2										1					1																																										4
AGCCC/CTGGG	4																																																									4
AGCCT/AGGCT						1																																																				1
AGCGC/CGCTG	15																																																									15
AGCGG/CCGCT	1																																																									1
AGCTC/AGCTG	3	1																																																								4
AGGCG/CCTCG	2	1	2																																																							5
AGGGC/CCCTG	1																																																									1
ATATC/ATATG	1																																																									1
ATCGC/ATGCG	2																																																									2
CCCCG/CGGGG	15	2																																																								17
CCGCG/CGCGG	136	3																																																								139
AAAAAC/GTTTTT	20	1	1																																																							22
AAAAAG/CTTTTT	3	1																																																								4
AAAAAT/ATTTTT	5																																																									5
AAAACG/CGTTTT	1																																																									1
AAAAGC/CTTTTG	1																																																									1
AAACAC/GTGTTT	3																																																									3
AAACAT/ATGTTT		1																																																								1
AAACCC/GGGTTT	1		1																																																							2
AAACGC/CGTTTG	4	2																																																								6
AAACGG/CCGTTT	1																																																									1
AAACTC/AGTTTG	1																																																									1
AAAGAC/CTTTGT	1																																																									1
AAAGAG/CTCTTT	4																																																									4
AAAGCC/CTTTGG		1																																																								1
AAAGCG/CGCTTT	3																																																									3
AAAGGC/CCTTTG	1	1																																																								2
AAAGTC/ACTTTG	1																																																									1
AAAGTG/ACTTTC	1																																																									1
AAATAC/ATTTGT	2																																																									2
AAATAG/ATTTCT	1																																																									1
AAATGC/ATTTGC	1	1																																																								2
AAATTG/AATTTC	1																																																									1
AACAAG/CTTGTT	3	1	1										1																																													6
AACAAT/ATTGTT	5	3	1																																																							9
AACACC/GGTGTT	5																																																									5
AACAGC/CTGTTG	375	77	27	9	3	2	2				1																																															496
AACAGT/ACTGTT	2																																																									2
AACATC/ATGTTG	3																																																									3
AACATG/ATGTTC	4	1																																																								5
AACCAC/GGTTGT	1																																																									1
AACCAG/CTGGTT	6	1	1																																																							8
AACCGC/CGGTTG	3																																																									3
AACCGT/ACGGTT	1																																																									1
AACCTC/AGGTTG	2	1																																																								3
AACGAC/CGTTGT	8	1																																																								9
AACGCC/CGTTGG	28	3	3			1																																																				35
AACGCG/CGCGTT	4																																																									4
AACGCT/AGCGTT	1																																																									1
AACGGC/CCGTTG	118	22	11	2	1	1		1																																																		156
AACGGT/ACCGTT	1																																																									1
AACGTC/ACGTTG	3																																																									3
AACTAG/AGTTCT	2	1																																																								3
AACTCC/AGTTGG	2																																																									2
AACTCG/AGTTCG	5																																																									5
AACTCT/AGAGTT	1																																																									1
AACTGC/AGTTGC	5																																																									5
AACTTC/AAGTTG	2																																																									2
AAGACC/CTTGGT	3																																																									3
AAGACG/CGTCTT	8	1																																																								9
AAGAGC/CTCTTG	39	4																																																								43
AAGAGG/CCTCTT	7	1																																																								8
AAGAGT/ACTCTT	1																																																									1
AAGATG/ATCTTC	1	1	1																																																							3
AAGCAC/CTTGTG	1																																																									1
AAGCAG/CTGCTT	11	2																																																								13
AAGCCC/CTTGGG	3																																																									3
AAGCCG/CGGCTT	5																																																									5
AAGCGC/CGCTTG	4																																																									4
AAGCGG/CCGCTT			1																																																							1
AAGCTC/AGCTTG	7	2	1																																																							10
AAGCTG/AGCTTC	1		1																																																							2
AAGGAC/CCTTGT	5	2			1																																																					8
AAGGAG/CCTTCT	2																																																									2
AAGGCC/CCTTGG	31	1	1																																																							33
AAGGCT/AGCCTT	2																																																									2
AAGGGC/CCCTTG	39	4	3	1			1				1																																															49
AAGGGG/CCCCTT	2																																																									2
AAGGGT/ACCCTT	2	1																																																								3
AAGGTC/ACCTTG	2																																																									2
AAGGTG/ACCTTC	2																																																									2
AAGTAT/ACTTAT	1																																																									1
AAGTCC/ACTTGG	2																																																									2
AAGTCG/ACTTCG	2																																																									2
AAGTCT/ACTTAG	1																																																									1
AAGTGC/ACTTGC	3																																																									3
AATAGC/ATTGCT	1			1																																																						2
AATCAG/ATTCTG	2																																																									2
AATCAT/ATGATT	1																																																									1
AATCCG/ATTCGG	1																																																									1
AATCTG/AGATTC	1																																																									1
AATGAC/ATTGTC	1																																																									1
AATGAT/ATCATT	1																																																									1
AATGCC/ATTGGC	1	1																																																								2
AATGCG/ATTCGC	4																																																									4
AATGCT/AGCATT	1																																																									1
AATGGC/ATTGCC	3																																																									3
AATGGG/ATTCCC	1																																																									1
AATGGT/ACCATT										1																																																1
AATGTC/ACATTG	1																																																									1
AATGTG/ACATTC	2																																																									2
ACACAG/CTGTGT	4	1																																																								5
ACACAT/ATGTGT	1																																																									1
ACACCG/CGGTGT	8	2																																																								10
ACACGC/CGTGTG	9	3				1																																																				13
ACACGG/CCGTGT	6	1	1																																																							8
ACACTC/AGTGTG		1																																																								1
ACACTG/AGTGTC	1																																																									1
ACAGAG/CTCTGT	1																																																									1
ACAGCC/CTGTGG	6	1																																																								7
ACAGCG/CGCTGT	23	2																																																								25
ACAGCT/AGCTGT	7																																																									7
ACAGGC/CCTGTG	5	1																																																								6
ACAGGG/CCCTGT	8	1																																																								9
ACAGTC/ACTGTG	1																																																									1
ACATCG/ATGTCG	5																																																									5
ACATGG/ATGTCC	2	1																																																								3
ACATGT/ACATGT	9																																																									9
ACCACG/CGTGGT	3																																																									3
ACCAGC/CTGGTG	20	4			2		1																																																			27
ACCAGT/ACTGGT	1																																																									1
ACCATC/ATGGTG	3																																																									3
ACCCGC/CGGGTG	12	3	1																																																							16
ACCCGT/ACGGGT	1																																																									1
ACCCTC/AGGGTG	1																																																									1
ACCCTG/AGGGTC	1								1																																																	2
ACCGAG/CGGTCT	7	2	1																																																							10
ACCGCC/CGGTGG	38	4	1			1																																																				44
ACCGCG/CGCGGT	23																																																									23
ACCGCT/AGCGGT	2																																																									2
ACCGGC/CCGGTG	13	1	1																																																							15
ACCGGG/CCCGGT	2			1																																																						3
ACCGTC/ACGGTG	4	1																																																								5
ACCGTG/ACGGTC	69	10	2			1																																																				82
ACCTCC/AGGTGG	1																																																									1
ACCTCG/AGGTCG	7																																																									7
ACCTCT/AGAGGT	1																																																									1
ACCTGC/AGGTGC	4	1																																																								5
ACCTGG/AGGTCC	2																																																									2
ACGACT/AGTCGT	4																																																									4
ACGAGC/CGTGCT	2																																																									2
ACGAGG/CCTCGT	148	33	9	1	1																																																					192
ACGAGT/ACTCGT	4																																																									4
ACGATC/ATCGTG	1																																																									1
ACGATG/ATCGTC	42	2	1																																																							45
ACGCAG/CGTCTG	58	14	1	2		1																																																				76
ACGCAT/ATGCGT	1																																																									1
ACGCCC/CGTGGG	14	1		1																																																						16
ACGCCG/CGGCGT	147	24	6	2			1																																																			180
ACGCGC/CGCGTG	36	5	1																																																							42
ACGCGG/CCGCGT	14	2	1																																																							17
ACGCTC/AGCGTG	11	4	1		1																																																					17
ACGCTG/AGCGTC	42	12	3	1		1				1																																																60
ACGGAG/CCGTCT	1																																																									1
ACGGCC/CCGTGG	181	48	11	6	3	1	1		1																																																	252
ACGGCG/CCGTCG	215	53	8	1	2	1																																																				280
ACGGCT/AGCCGT	5	2																																																								7
ACGGGC/CCCGTG	13	6	1		1																																																					21
ACGGGG/CCCCGT	4																																																									4
ACGTAT/ACGTAT	1																																																									1
ACGTCG/ACGTCG	3																																																									3
ACTAGC/AGTGCT	1																																																									1
ACTAGT/ACTAGT	5	2																																																								7
ACTCAG/AGTCTG	5	1																																																								6
ACTCAT/AGTATG	1																																																									1
ACTCCC/AGTGGG	4																																																									4
ACTCCG/AGTCGG	20		2																																																							22
ACTCGC/AGTGCG	13	1																																																								14
ACTCGG/AGTCCG	29	8	4				1																																																			42
ACTCTC/AGAGTG	3	1																																																								4
ACTCTG/AGAGTC	10	1																																																								11
ACTGAG/AGTCTC	37	8	1	2																																																						48
ACTGCC/AGTGGC	53	7	4	1	1		1																																																			67
ACTGCG/AGTCGC	8																																																									8
ACTGCT/AGCAGT	21	1																																																								22
ACTGGC/AGTGCC	37	5		1																																																						43
ACTGGG/AGTCCC	16	2	2	1		1																																																				22
AGAGCC/CTCTGG	120	29	8	4	2			2	1																																																	166
AGAGCG/CGCTCT	13	1																																																								14
AGAGCT/AGCTCT	55	20	8	2	1				1																																																	87
AGAGGC/CCTCTG	27	8	2	2						1																																																40
AGATCT/AGATCT	1																																																									1
AGATGC/ATCTGC	11	4																																																								15
AGCAGG/CCTGCT	55	12	4	1	1				1																																																	74
AGCATC/ATGCTG	16	6								1																																																23
AGCCAT/ATGGCT	1																																																									1
AGCCCC/CTGGGG	12	2	1		1		1																																																			17
AGCCCG/CGGGCT	25	1	1																																																							27
AGCCGC/CGGCTG	98	12	2																																																							112
AGCCGG/CCGGCT	77	7	1	1							1																																															87
AGCCTC/AGGCTG	99	29	7	1	4	1																																																				141
AGCCTG/AGGCTC	22	3	3		1					1		2																																														32
AGCGCC/CGCTGG	330	75	12	4	1	2																																																				424
AGCGCG/CGCGCT	152	23	3																																																							178
AGCGGC/CCGCTG	435	72	16	6	3	1				1																																																534
AGCGGG/CCCGCT	20	2	1																																																							23
AGCTCC/AGCTGG	59	13	4				1		1	1																																																79
AGCTCG/AGCTCG	28	1																																																								29
AGCTGC/AGCTGC	18																																																									18
AGGATC/ATCCTG					1																																																					1
AGGATG/ATCCTC	13	2																																																								15
AGGCCC/CCTGGG	20	4	2			1	1		1																																																	29
AGGCCG/CCTCGG	135	18																																																								153
AGGCGC/CCTGCG	145	32	2	1	2		1																																																			183
AGGCGG/CCGCCT	55	11	1									1	1																																													69
AGGGCC/CCCTGG	32	5	1																																																							38
AGGGCG/CCCTCG	9	2	1			1																																																				13
AGGGGC/CCCCTG	16	6		1	1																																																					24
ATATCC/ATATGG	1																																																									1
ATCCCC/ATGGGG	2																																																									2
ATCCGC/ATGCGG	2																																																									2
ATCGCC/ATGGCG	4																																																									4
ATCGGC/ATGCCG	2										1																																															3
ATGCCC/ATGGGC	20	6	2			2																																																				30
ATGGCC/ATGGCC	2																																																									2
CCCCCG/CGGGGG	49	4	2																																																							55
CCCCGG/CCGGGG	15	1	1																																																							17
CCCGCG/CGCGGG	337	41	9	5	5	1	1		2																																																	401
CCGCGG/CCGCGG	91	6	1																																																							98
CCGGCG/CCGGCG	86	6																																																								92
