Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_001630785.1/fasta/hub_GCA_001630785.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              132826
Total size of examined sequences (bp):           112559038
Total number of identified SSRs:                 67552
Number of SSR containing sequences:              32577
Number of sequences containing more than 1 SSR:  8525
Number of SSRs present in compound formation:    24503


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	7
2	57359
3	674
4	4406
5	1544
6	3562

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			2		2	4
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1			2	3
AC	-	-	-	1037	717	867	897	238	77	15											2		3850
AG	-	-	-	2951	2621	2829	2087	1101	1983	5			16										13593
AT	-	-	-	31	23	18	6	7	1	1													87
CA	-	-	-	788	592	743	814	278	60	44				2									3321
CG	-	-	-	22	8	7	2	1	1														41
CT	-	-	-	1868	1653	1601	1688	983	320	78								486	3	3			8683
GA	-	-	-	1739	1884	1768	1509	328	327	245	377	164	2	1	1								8345
GC	-	-	-	17	6	1	1																25
GT	-	-	-	807	662	717	893	407	131	19				14	5			6		2			3663
TA	-	-	-	58	16	8	5	4															91
TC	-	-	-	2826	2309	2757	1908	1123	550	361	32	2		2				5	1	56			11932
TG	-	-	-	956	755	782	887	223	103	11	2	1	4	1	1			1	1				3728
AAC	-	-	11	3	2	2	1																19
AAG	-	-	26	9	2	1																	38
AAT	-	-	6	6	3																		15
ACA	-	-	13	8	2	1	2																26
ACC	-	-	4	2		1																	7
ACG	-	-	1																				1
ACT	-	-	2	1	1	1																	5
AGA	-	-	13	4	1	2	1																21
AGC	-	-	2																				2
AGG	-	-	21	2	4	2																	29
ATA	-	-	4	5	2	1																	12
ATC	-	-		1																			1
ATG	-	-	2			1	1																4
ATT	-	-	10	5	3																		18
CAA	-	-	14	7	1		1																23
CAC	-	-	3																				3
CAG	-	-	5	1																			6
CAT	-	-	3	1		1	1																6
CCA	-	-	5		1																		6
CCT	-	-	25	5	1																		31
CGA	-	-		1																			1
CGC	-	-	5																				5
CGG	-	-	2	1																			3
CGT	-	-	2																				2
CTA	-	-	3	1	1																		5
CTC	-	-	26	3	1	1																	31
CTG	-	-	4	3																			7
CTT	-	-	9	1																			10
GAA	-	-	13	7	3																		23
GAC	-	-	2																				2
GAG	-	-	29	6	2	1																	38
GAT	-	-	4	3	1																		8
GCA	-	-	10			2																	12
GCC	-	-	3																				3
GCG	-	-	3																				3
GCT	-	-	7	1																			8
GGA	-	-	31	2			1																34
GGC	-	-			1																		1
GGT	-	-	3																				3
GTA	-	-	2	1		1																	4
GTC	-	-	3																				3
GTG	-	-	6	2																			8
GTT	-	-	14	5	1	1																	21
TAA	-	-	7	2	4																		13
TAC	-	-	1	1																			2
TAG	-	-	2			1																	3
TAT	-	-		1	1																		2
TCA	-	-	2	1		1																	4
TCC	-	-	25	5	5	2																	37
TCG	-	-	4																				4
TCT	-	-	15	7		1																	23
TGA	-	-	2				1																3
TGC	-	-	3																				3
TGG	-	-	1																				1
TGT	-	-	10	4	2		1																17
TTA	-	-	4	2	1																		7
TTC	-	-	13	3	1																		17
TTG	-	-	16	7	3	2	2																30
AAAC	-	11	1	1																			13
AAAG	-	15	7																				22
AAAT	-	2																					2
AACA	-	19	1																				20
AAGA	-	11	13																				24
AAGC	-	1																					1
AATA	-	6																					6
AATC	-		1																				1
AATG	-	4	2																				6
AATT	-		1																				1
ACAA	-	3	1	1																			5
ACAG	-	13	3	5																			21
ACAT	-	13	5																				18
ACCA	-			1																			1
ACGA	-	1																					1
ACGC	-	4	3																				7
ACGG	-	2																					2
ACTC	-	207	154	8	1																		370
ACTG	-	5	2	1																			8
ACTT	-			1																			1
AGAA	-	25	11	3																			39
AGAC	-	41	10	6																			57
AGAT	-	20	20	2																			42
AGCG	-	1	1																				2
AGGC	-	1																					1
AGGG	-	1	1																				2
AGTA	-	1																					1
AGTC	-	5	1																				6
AGTG	-	239	102																				341
ATAA	-	1	3																				4
ATAC	-	3	2																				5
ATAG	-	5	284																				289
ATCA	-	1																					1
ATCC	-	1																					1
ATCG	-		1																				1
ATCT	-	36	5																				41
ATGA	-	1																					1
ATGC	-	2																					2
ATGG	-	1		1																			2
ATGT	-	5	1	1	1																		8
ATTA	-	1																					1
ATTC	-	1	2																				3
ATTG	-	2	2																				4
ATTT	-	5	1																				6
CAAA	-	5	1																				6
CACG	-	5	5																				10
CACT	-	175	77	1																			253
CAGA	-	11		2	1																		14
CAGG	-	1																					1
CAGT	-	1	1		1																		3
CATA	-	4	1	1																			6
CATT	-	1	2																				3
CCGG	-	1																					1
CCGT	-	2	1	2																			5
CCTA	-	1																					1
CCTC	-	6	1																				7
CGAG	-	1																					1
CGAT	-	1																					1
CGCA	-	4	1																				5
CGCT	-	2	1																				3
CGTG	-	1	2																				3
CTAA	-	1																					1
CTAC	-			1																			1
CTAT	-	7	4																				11
CTCA	-	319	131	10	12																		472
CTCC	-	6																					6
CTCG	-	6	2																				8
CTGA	-		2																				2
CTGT	-	9	16	1	1																		27
CTTA	-	1																					1
CTTC	-		1																				1
CTTG	-	1																					1
CTTT	-	7	2	2																			11
GAAA	-	6	3																				9
GAAG	-	1																					1
GACA	-	2	5																				7
GACT	-	2		1																			3
GAGC	-	12	3		1																		16
GAGG	-	5																					5
GAGT	-	274	195					6															475
GATA	-	1	2																				3
GATG	-	1																					1
GATT	-	2																					2
GCAC	-	3	2																				5
GCGA	-	2																					2
GCGT	-		3																				3
GCTC	-	2																					2
GCTG	-	1																					1
GCTT	-	1																					1
GGAG	-	3																					3
GGCA	-	1																					1
GGCT	-	1																					1
GGGA	-	2																					2
GTAA	-	1	1	1																			3
GTAT	-	4	4																				8
GTCA	-		1																				1
GTCT	-	5	5																				10
GTGA	-	227	134																				361
GTGC	-	11	5	1																			17
GTGG	-	1																					1
GTTG	-	2																					2
GTTT	-	3	2																				5
TAAA	-	3																					3
TAAG	-	1																					1
TAAT	-	2																					2
TACA	-	6	3																				9
TACG	-	1		1																			2
TAGA	-	9	8																				17
TAGT	-	1																					1
TATC	-	7	3	1																			11
TATG	-	7	4																				11
TATT	-	4																					4
TCAA	-	1	1	1																			3
TCAC	-	236	151	19	3																		409
TCAG	-			1																			1
TCAT	-	2	1																				3
TCCC	-	1																					1
TCCG	-	3		1																			4
TCGC	-	1	1																				2
TCTA	-	88	13																				101
TCTG	-	27	12	4																			43
TCTT	-	36	10	2	3																		51
TGAA	-	1																					1
TGAC	-	2																					2
TGAG	-	207	127	3																			337
TGAT	-	1		1																			2
TGCC	-	4																					4
TGCG	-	7	2																				9
TGGA	-	1																					1
TGGC	-	1																					1
TGGT	-	1																					1
TGTA	-	16	3																				19
TGTC	-	53	20	2																			75
TGTT	-	22	1																				23
TTAA	-		1																				1
TTAC	-	1																					1
TTAG	-	1		1																			2
TTAT	-	2	1																				3
TTCA	-	2	1																				3
TTCC	-	1																					1
TTCG	-	1		1																			2
TTCT	-	4	2	1																			7
TTGA	-	1	1																				2
TTGT	-	3																					3
TTTA	-	5																					5
TTTC	-	5	3																				8
TTTG	-	5	2	1																			8
AAAAC	20	1																					21
AAAAG	9																						9
AAAAT	20																						20
AAACA	9																						9
AAACC	1																						1
AAACG	2																						2
AAACT	2																						2
AAAGA	4																						4
AAAGC	1																						1
AAAGG	2																						2
AAAGT	17	6																					23
AAATA	3																						3
AAATC	1																						1
AAATG	3																						3
AAATT	5																						5
AACAA	5																						5
AACAC		1																					1
AACAG	2																						2
AACAT	2																						2
AACCA		1																					1
AACGA	1																						1
AACGG		1																					1
AACGT	1																						1
AACTA	3																						3
AACTT	1	1																					2
AAGAG	5																						5
AAGAT	1																						1
AAGCG	1																						1
AAGCT		1																					1
AAGGA	1																						1
AAGGT	12	12																					24
AAGTA	4																						4
AAGTT	1																						1
AATAA	5																						5
AATAC	7	3																					10
AATAT	1																						1
AATGA	3																						3
AATTA	4																						4
AATTC	2																						2
AATTT	1																						1
ACAAA	12																						12
ACAAC	1																						1
ACAAT	2	2																					4
ACACA	8																						8
ACATT	1																						1
ACCGC	1																						1
ACCTA		1																					1
ACCTC	7	14	1																				22
ACCTT	27	9																					36
ACGGA	2																						2
ACGGT	1																						1
ACTCA	2																						2
ACTTC	1																						1
ACTTG	1																						1
ACTTT	22	2																					24
AGAAA	5																						5
AGAAC	1																						1
AGAAG	1																						1
AGAAT		1																					1
AGAGA	6	1	1																				8
AGAGC	2	1																					3
AGAGG	3	1																					4
AGAGT		1																					1
AGATG	1																						1
AGATT	2																						2
AGCAC	1																						1
AGCAG		1																					1
AGCGG	1																						1
AGCTC	1																						1
AGGAA	1																						1
AGGAG		1		1																			2
AGGAT	1																						1
AGGGA	1																						1
AGGGG	2																						2
AGGTA	18	13																					31
AGGTG	7	13																					20
AGTAA	4	1																					5
AGTAC	1																						1
AGTCT	1																						1
AGTTA	1																						1
AGTTT	2	1																					3
ATAAA	5																						5
ATAAG	2																						2
ATACA	8	2																					10
ATACT	1																						1
ATATA		1																					1
ATATC	1																						1
ATCAA	1																						1
ATCAC	1																						1
ATGAA	1																						1
ATGGT	1																						1
ATGTG	1																						1
ATGTT	3																						3
ATTAA	1																						1
ATTAC	2																						2
ATTCA	1																						1
ATTCT	1																						1
ATTGA	1																						1
ATTGT		3																					3
ATTTA	2																						2
ATTTC	5																						5
ATTTG	2																						2
ATTTT	16	1																					17
CAAAA	16	1																					17
CAACA	3																						3
CAAGA	1																						1
CAATA	2	3																					5
CAATG			1																				1
CAATT	3																						3
CACAA	1																						1
CACAC	2																						2
CACAT	1		1																				2
CACCT	10	8																					18
CACTT	2																						2
CAGAA	2																						2
CAGAG	1																						1
CAGTC	1																						1
CATCT	1																						1
CATTT	2																						2
CCACA	1																						1
CCATT	1																						1
CCCAA	1																						1
CCCCT	2																						2
CCCGG	1																						1
CCCTA	1																						1
CCCTC	2	1																					3
CCGCC	1																						1
CCGCG	1																						1
CCGGC	3																						3
CCGGG	3																						3
CCGTT	2																						2
CCTAA	2																						2
CCTCA	11	9	2																				22
CCTCT	4	1																					5
CCTTA	16	11																					27
CCTTG	1																						1
CCTTT	1																						1
CGATC	1																						1
CGCGA	1																						1
CGCGC	5																						5
CGCGG	1																						1
CGCGT	1																						1
CGGAT	1																						1
CGGCC	14																						14
CGGGC	16																						16
CGGGG	1																						1
CGTAG	1																						1
CGTCC	1																						1
CGTTC	2																						2
CGTTT	1																						1
CTACC	2																						2
CTAGT	1																						1
CTATT	1																						1
CTCAA	1																						1
CTCAC	7	12																					19
CTCAT	1																						1
CTCCC	1																						1
CTCCT	7	2																					9
CTCGG	1																						1
CTCTA	1																						1
CTCTC	18			1																			19
CTCTT	2	1																					3
CTGAA	3																						3
CTGAT	1																						1
CTGGC	1																						1
CTGGG	1																						1
CTGTA	1																						1
CTGTC	1																						1
CTGTT	1																						1
CTTAA	3																						3
CTTAC	23	10	1																				34
CTTCT	2																						2
CTTTA	1																						1
CTTTT	2																						2
GAAAA	7																						7
GAAAC	2																						2
GAAAG	2																						2
GAAAT	3																						3
GAACA	1																						1
GAAGA	1																						1
GAATA	1																						1
GAATC	1																						1
GAATG	1																						1
GAGAA	2																						2
GAGAC	1																						1
GAGAG	19	2																					21
GAGAT	4																						4
GAGGA	1	2																					3
GAGGG	1																						1
GAGGT	10	11																					21
GATAA	1																						1
GATCA	1																						1
GATTA	1																						1
GATTT	2																						2
GCAAA	1																						1
GCAAT	1																						1
GCCCA	2																						2
GCCCC	2																						2
GCCCG	9																						9
GCCGA	1																						1
GCCGC	2																						2
GCCGG	2																						2
GCCTA	1																						1
GCGAT	1																						1
GCGCG	2																						2
GCGGC	1																						1
GCGGG	1																						1
GCTTT	1																						1
GGAAC	1																						1
GGAAT	1																						1
GGAGA	3	2																					5
GGAGG	1																						1
GGCCC	12																						12
GGCCG	2																						2
GGCGC	2																						2
GGGAA	1																						1
GGGCC	11	1																					12
GGGGA	1																						1
GGGGC	2																						2
GGGTT	1																						1
GGTAA	17	3																					20
GGTGA	7	13																					20
GGTTG	1																						1
GGTTT	1																						1
GTAAA	5	1																					6
GTAAC	2																						2
GTAAG	12	6																					18
GTACT		1																					1
GTAGC	1																						1
GTAGG	1		1																				2
GTATG		1																					1
GTATT	1	1																					2
GTCTT	1																						1
GTGAG	10	9	1																				20
GTGAT		1																					1
GTGGG	1																						1
GTGTC	1																						1
GTGTG	1																						1
GTTAG	2																						2
GTTCA	1																						1
GTTCC	1																						1
GTTGC	2																						2
GTTTC	2	1																					3
GTTTG	1																						1
GTTTT	14	1																					15
TAAAA	12																						12
TAAAG	1	1																					2
TAAAT	2																						2
TAACA	1																						1
TAACC	2																						2
TAACG	2																						2
TAAGC	1	1																					2
TAAGG	40	11																					51
TAATT	5																						5
TACAA	5	6																					11
TACAC	1																						1
TACAG	1																						1
TACAT	1																						1
TACCC	2																						2
TACCT	15	14																					29
TACGA	2																						2
TACGG	1																						1
TACTC	1																						1
TACTT	2																						2
TAGCT	1																						1
TAGGA			1																				1
TAGGC	1																						1
TAGGG	1																						1
TAGGT	3																						3
TAGTC	1																						1
TATAC	1																						1
TATAT		1																					1
TATCA	1																						1
TATCT	1																						1
TATTG	4	5																					9
TATTT	5																						5
TCAAA	2																						2
TCAAG	1																						1
TCAAT	2																						2
TCACC	12	11	3																				26
TCACT	1																						1
TCAGC	2																						2
TCAGT	1																						1
TCATT	4																						4
TCCCC	2																						2
TCCCT	1																						1
TCCGT	1																						1
TCCTC	4																						4
TCCTT	1																						1
TCGGG	2																						2
TCGTT	1																						1
TCTCC	4	1																					5
TCTCG	1																						1
TCTCT	15	2	1																				18
TCTGA	1																						1
TCTGT	1																						1
TCTTC	2																						2
TCTTT	3																						3
TGAAA	5																						5
TGAAT	1																						1
TGACG	1																						1
TGAGA		1																					1
TGAGC	2																						2
TGAGG	13	12																					25
TGAGT	1																						1
TGATC	1																						1
TGATT	1																						1
TGCAA	1																						1
TGCCC	1																						1
TGCTT	2																						2
TGGGA	2																						2
TGGTC	1																						1
TGTAA	2	1																					3
TGTAT	1																						1
TGTCT	1																						1
TGTGA		1																					1
TGTGT	5	1																					6
TGTTT	13																						13
TTAAA	1																						1
TTACC	26	10																					36
TTACT	3	1																					4
TTAGC	1																						1
TTAGG	1																						1
TTATG	1																						1
TTATT	3																						3
TTCAA	2																						2
TTCAC	1																						1
TTCAG	1																						1
TTCAT	1																						1
TTCCG	1																						1
TTCCT	1																						1
TTCGC	1																						1
TTCGT	1																						1
TTCTA	2																						2
TTCTC	5	1																					6
TTCTG	1																						1
TTGAA	2	1																					3
TTGAG	1																						1
TTGAT	1																						1
TTGCC	1																						1
TTGTA	18	5																					23
TTGTC	1																						1
TTGTT	12																						12
TTTAA	3																						3
TTTAC	1																						1
TTTAG	1																						1
TTTAT	4																						4
TTTCA	6	1																					7
TTTCC	4																						4
TTTCT	6																						6
TTTGA	1																						1
TTTGG	2																						2
TTTGT	10																						10
TTTTA	12																						12
TTTTC	15																						15
TTTTG	26	2																					28
AAAAAC	6																						6
AAAAAG	1																						1
AAAAAT	3																						3
AAAACA	2																						2
AAAACG	1																						1
AAACAG	3																						3
AAAGAA	3																						3
AAAGAG	14	2																					16
AAAGTC		1																					1
AAATAA	1																						1
AAATAC	1																						1
AAATAG	1																						1
AAATTT	1																						1
AACAAA	2																						2
AACAAG	1																						1
AACATG	1																						1
AACATT	1																						1
AACCTC	1																						1
AACCTT	25																						25
AACTAC	2																						2
AACTCT		1																					1
AAGAGA	27																						27
AAGCCT	3																						3
AAGGGT	1																						1
AAGGTA	2																						2
AAGGTC	1																						1
AAGGTT	17																						17
AATAAA	2																						2
AATACA		1																					1
AATCCA	1																						1
AATCTG	1																						1
AATGTG	1	2																					3
AATTAC	1																						1
AATTGA	1																						1
AATTGT	3																						3
AATTTT	1																						1
ACAAAA	2																						2
ACAAAC	2																						2
ACAACG	1																						1
ACAACT	1																						1
ACAATC	1																						1
ACAATT	2																						2
ACACAA	9																						9
ACACAG	23	8																					31
ACACAT	15																						15
ACACCA	1																						1
ACACGC	9																						9
ACACGT	4																						4
ACACTA	1																						1
ACACTC	39	4																					43
ACACTG	1	1																					2
ACAGAC	11	4																					15
ACAGAT	1																						1
ACAGCC	1																						1
ACATAC	11																						11
ACATAG	5	1																					6
ACCAAC	1																						1
ACCCTA	1																						1
ACCTCC	1																						1
ACCTTA	16	1																					17
ACCTTT	1																						1
ACGCAC	4	1																					5
ACGCTC	1																						1
ACGTAC	1																						1
ACTACA	2																						2
ACTACG	1																						1
ACTCAC	63	5																					68
ACTCAG		1																					1
ACTCAT	1																						1
ACTCTC	1																						1
ACTGAG	18	4																					22
ACTTCC	1																						1
ACTTCT		1																					1
ACTTTT	1																						1
AGAAAA	1																						1
AGAAAC	2																						2
AGAAAG	10	2																					12
AGACAC	4																						4
AGACAT	1																						1
AGACTC	1																						1
AGACTG	30																						30
AGAGAA	23	4																					27
AGAGAT	60	173																					233
AGAGCA	2																						2
AGAGCG	2																						2
AGAGGC	6																						6
AGAGGG	4	1																					5
AGAGGT	2																						2
AGAGTC	2																						2
AGAGTG	5	4																					9
AGATAG	14																						14
AGCCAC		2																					2
AGCCAT	1																						1
AGCCTA	1	1																					2
AGCCTC		1																					1
AGCTAA		1																					1
AGGAAG	2																						2
AGGAGA	1																						1
AGGCAG		2																					2
AGGCTT	4																						4
AGGGAG	1	1																					2
AGGTTA	17	1																					18
AGGTTC	1																						1
AGGTTG	1																						1
AGTAGA	1																						1
AGTCTC	16	6																					22
AGTCTG	1																						1
AGTGAG	3																						3
AGTGTG	46	9																					55
AGTGTT	1																						1
AGTTTG	1																						1
ATACAA	3																						3
ATACAC	17	3																					20
ATACTA	1																						1
ATAGAG	10	4																					14
ATAGGC	1																						1
ATATGT	1																						1
ATCTCC	1																						1
ATCTCT	19	13																					32
ATGCAA	1																						1
ATGGAA	1																						1
ATGTCT	3																						3
ATGTGT	3																						3
ATTACA	2																						2
ATTCCC	1																						1
ATTGTA	1																						1
ATTTAA	1																						1
ATTTGA	1																						1
ATTTTG	2																						2
ATTTTT	2																						2
CAAAAA	2																						2
CAAACA	2																						2
CAAATT	1																						1
CAACTA	1																						1
CAAGCA	1																						1
CAAGTC	1																						1
CAAGTG	1																						1
CAATTT	1																						1
CACACC	3																						3
CACACG	17																						17
CACACT	103	11			5																		119
CACAGA	2																						2
CACAGC	1																						1
CACATA	21	25	9	5																			60
CACATT	1	1																					2
CACCCT	1																						1
CACGCA	11	2																					13
CACGCG	1																						1
CACTCA	53	3																					56
CACTCT		1																					1
CACTGA	1																						1
CACTGG	1																						1
CACTTC	1																						1
CAGACA	4	1																					5
CAGACT			1																				1
CAGAGG	1																						1
CAGAGT		1																					1
CAGCCA	2																						2
CAGGCC	1																						1
CAGGGA	1																						1
CAGGTC		1																					1
CAGTCC	1																						1
CAGTCT	10																						10
CATAAC	1																						1
CATACA	53	2																					55
CATACT		2	3																				5
CATAGA	2																						2
CCAAAA	1																						1
CCAAGT		1																					1
CCAATG	1																						1
CCACAG	2	1																					3
CCAGTC	1																						1
CCCACA	4																						4
CCCTAG		1																					1
CCCTCT	2	2																					4
CCTCAG	1																						1
CCTCCC	1																						1
CCTCGC	1																						1
CCTCTC	1																						1
CCTCTG	2	1																					3
CCTCTT	1																						1
CCTTAA	19	12																					31
CCTTAC	1																						1
CCTTCC	1																						1
CGAGAT	1																						1
CGAGCC	1																						1
CGCACA	11																						11
CGCACG	1																						1
CGCAGC	1																						1
CGCATC	1																						1
CGCCTC	2																						2
CGCGCA	1																						1
CGCTCC	1																						1
CGGGAG	1																						1
CGGGTG	1																						1
CGTCCA	1																						1
CGTGAG	1																						1
CGTGTG	7																						7
CTAACC	1																						1
CTAAGC	1																						1
CTATCT	9	3																					12
CTATGT	1																						1
CTCAAC		1																					1
CTCACA	51																						51
CTCACC		2																					2
CTCACT	1	1																					2
CTCAGC	3																						3
CTCAGT	14	1																					15
CTCCCT		3																					3
CTCCGC	1																						1
CTCCTG	1																						1
CTCCTT	1																						1
CTCGAC	1																						1
CTCGCT	4																						4
CTCTAA	1																						1
CTCTAT	9	5																					14
CTCTCA	2																						2
CTCTCC	12	2																					14
CTCTCG	3		4																				7
CTCTGA	1																						1
CTCTGC	8																						8
CTCTTC	1	1																					2
CTCTTT	3	4																					7
CTGACT		1																					1
CTGAGA	13	2																					15
CTGAGT		1																					1
CTGCCT	1																						1
CTGCTC	1																						1
CTGGCT	1																						1
CTGGGT	1																						1
CTGTGT	8																						8
CTGTTT	2																						2
CTTAAC	26																						26
CTTCAA	1																						1
CTTTAA	1																						1
CTTTCT	4	1																					5
GAAAAA	2																						2
GAAAAC	2																						2
GAAAGA	8																						8
GAAATA	1																						1
GAAATT	1																						1
GACAAG	1																						1
GACACA	10																						10
GACATA	4																						4
GACCTT	1																						1
GACTGA	21	5	1																				27
GACTGG	1																						1
GACTTC		1																					1
GAGAAA	12	1																					13
GAGACT	31	6	1																				38
GAGAGC	9	1	12																				22
GAGAGG	19	4																					23
GAGAGT	4																						4
GAGATA	24	161																					185
GAGATG	6																						6
GAGATT	2	1																					3
GAGCCT	1																						1
GAGGAC	1																						1
GAGGCA	5																						5
GAGGGA	3	1																					4
GAGGTA	1																						1
GAGTAT	1																						1
GAGTCT	1																						1
GAGTGA	4	1																					5
GAGTGT	37	10																					47
GATAAG		1																					1
GATAGA	15	3																					18
GATATA	1																						1
GATCGT	1																						1
GATTGA	1																						1
GCAACA	2																						2
GCACAC	12																						12
GCACCG	1																						1
GCAGAG	2																						2
GCATCT	1																						1
GCCACA	1																						1
GCCACG	1																						1
GCCACT	1																						1
GCCGGC	1																						1
GCCTAA	4																						4
GCCTCA		1																					1
GCGTGT	5	1																					6
GCTGAG		1																					1
GCTGTG	4																						4
GCTTAG	1																						1
GGAGAC	1																						1
GGAGAG	4	2																					6
GGAGAT	2		1																				3
GGATAC	1																						1
GGATGA	1																						1
GGCAGA	1	1																					2
GGCAGG	1																						1
GGCCTG	2																						2
GGCTAC	1																						1
GGCTGA	1																						1
GGCTGT		1																					1
GGCTTA	9																						9
GGGAGA	5	1																					6
GGGAGG	1																						1
GGGCAT	1																						1
GGGCCG	1																						1
GGGCCT	1																						1
GGGGGA	1																						1
GGGTGT	2																						2
GGTAAA		1																					1
GGTAAG	1																						1
GGTAGA	1																						1
GGTAGT	1																						1
GGTGAG		1																					1
GGTGGC	2																						2
GGTGTG	2																						2
GGTTAA	21	3																					24
GGTTAG	2																						2
GTAAGG	1																						1
GTAGAG	2																						2
GTAGCC		1																					1
GTAGTT	1																						1
GTATCT		1																					1
GTATGT	4	29																					33
GTATTA	1																						1
GTCACA	1	1																					2
GTCACG	1																						1
GTCAGT	1																						1
GTCCGT		1																					1
GTCCTC	1																						1
GTCTAT	1																						1
GTCTCA	35	1	1																				37
GTCTGA	2																						2
GTCTGT	3																						3
GTGAAC		1																					1
GTGAGA	2																						2
GTGAGC	1																						1
GTGAGT	71	20																					91
GTGATG	1																						1
GTGCAA	1																						1
GTGCCG	1																						1
GTGCGA	1																						1
GTGCGC	1																						1
GTGCGT	11	2																					13
GTGGCT	1	1																					2
GTGGTT	1																						1
GTGTAC	5	1																					6
GTGTAT	4	7																					11
GTGTCT	3	5																					8
GTGTGA	96	11																					107
GTGTGC	23	1																					24
GTGTGG	8		1																				9
GTGTTG	2																						2
GTGTTT	3																						3
GTTAAA	1																						1
GTTAAG	31	3																					34
GTTAAT	1																						1
GTTGCG	1																						1
GTTGTA	1																						1
GTTGTG	2		1																				3
GTTTAC	1																						1
GTTTTT	3																						3
TAAAAA	1																						1
TAAAGG	1																						1
TAAATG		1																					1
TAACAT	1	1																					2
TAACCC	2																						2
TAACCG	1																						1
TAACCT	26																						26
TAAGCC	1																						1
TAAGGC	2																						2
TAAGGG	1																						1
TAAGGT	20	1																					21
TAATGA	1																						1
TACAAA	2																						2
TACAAC		1																					1
TACACA	10																						10
TACACG		1																					1
TACCAC	1																						1
TACTCA			1																				1
TAGAGA	7	3																					10
TAGAGC	2																						2
TATACT		1																					1
TATCTA	1																						1
TATCTC	21	1																					22
TATGGA	1																						1
TATGTA	1																						1
TATGTC	4																						4
TATGTG	9																						9
TATTTT	2																						2
TCAAAA	2																						2
TCAAAC	1																						1
TCACAA	2																						2
TCACAC	37																						37
TCACAG	1																						1
TCACAT		1	1																				2
TCACGG	1																						1
TCACTC	2																						2
TCAGAC	2																						2
TCAGTC	27																						27
TCAGTG	1																						1
TCCATC	5																						5
TCCCTC	4	1																					5
TCCTCA	1																						1
TCCTCG	2																						2
TCGACT	1																						1
TCTACC	1																						1
TCTATC	23	10																					33
TCTCAC	2	1																					3
TCTCAG	29	13	1																				43
TCTCCC	2	1																					3
TCTCGC	2																						2
TCTCTA	37	7	90																				134
TCTCTT	34																						34
TCTGCC	2	3																					5
TCTGGA	1																						1
TCTGTA	1																						1
TCTGTG	10	1																					11
TCTGTT	2																						2
TCTTTC	14	1																					15
TCTTTG	1																						1
TGAAAG	1																						1
TGAAAT	1																						1
TGACTA	1																						1
TGAGAC	15																						15
TGAGAG	7																						7
TGAGAT		1																					1
TGAGGC	2																						2
TGAGTA			4																				4
TGAGTG	47	9																					56
TGATTG	2																						2
TGATTT	1																						1
TGCCCA		1	1																				2
TGCCTC	4	1																					5
TGCGGC	1																						1
TGCGTG	7	2																					9
TGGCTG		1																					1
TGGTTT	1																						1
TGTAAC	1																						1
TGTACT	1																						1
TGTATG	10																						10
TGTCTA		1																					1
TGTCTG	8	9																					17
TGTCTT	1																						1
TGTGAA	3																						3
TGTGAC	1																						1
TGTGAG	61	13																					74
TGTGCG	13	2																					15
TGTGGC	2	2																					4
TGTGTA	27	3																					30
TGTGTC	12	2																					14
TGTGTT	3	1																					4
TGTTAC	1																						1
TGTTGA	1																						1
TGTTTG	4																						4
TGTTTT	1																						1
TTAACC	24	1																					25
TTAAGA	1																						1
TTAAGC	1	1																					2
TTAAGG	18	3																					21
TTACAG	1																						1
TTACCC	1																						1
TTACCT	1																						1
TTAGAG		1																					1
TTAGCT	1																						1
TTAGGC	1																						1
TTCAAG	1																						1
TTCACT		1																					1
TTCTCT	4	4																					8
TTCTGA	2																						2
TTCTTA	1																						1
TTGAAA	3																						3
TTGAGA		1																					1
TTGTAG	1																						1
TTGTGA	1																						1
TTGTGT	1																						1
TTGTTC	1																						1
TTTAAA	1																						1
TTTACC	2																						2
TTTATT	1																						1
TTTCAA	1																						1
TTTCAT	2																						2
TTTCTC	7	1																					8
TTTCTG	1																						1
TTTCTT	3																						3
TTTGTC	1																						1
TTTGTG	3																						3
TTTTAG	1																						1
TTTTCA	2																						2
TTTTCT	1																						1
TTTTGT	2																						2
TTTTTA	1																						1
TTTTTC	1																						1
TTTTTG	1																						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	2		4	7
AC/GT	-	-	-	3588	2726	3109	3491	1146	371	89	2	1	4	17	6			7	1	2	2		14562
AG/CT	-	-	-	9384	8467	8955	7192	3535	3180	689	409	166	18	3	1			491	4	59			42553
AT/AT	-	-	-	89	39	26	11	11	1	1													178
CG/CG	-	-	-	39	14	8	3	1	1														66
AAC/GTT	-	-	78	34	11	6	7																136
AAG/CTT	-	-	89	31	7	4	1																132
AAT/ATT	-	-	31	21	14	1																	67
ACC/GGT	-	-	22	4	1	1																	28
ACG/CGT	-	-	12	1																			13
ACT/AGT	-	-	10	4	2	3																	19
AGC/CTG	-	-	31	5		2																	38
AGG/CCT	-	-	157	23	13	6	1																200
ATC/ATG	-	-	13	6	1	3	3																26
CCG/CGG	-	-	13	1	1																		15
AAAC/GTTT	-	71	9	3																			83
AAAG/CTTT	-	109	51	8	3																		171
AAAT/ATTT	-	28	5																				33
AACC/GGTT	-	3		1																			4
AACG/CGTT	-	2		1																			3
AACT/AGTT	-	3		1																			4
AAGC/CTTG	-	3																					3
AAGG/CCTT	-	2	1																				3
AAGT/ACTT	-	5	1	2																			8
AATC/ATTG	-	8	5	2																			15
AATG/ATTC	-	12	8																				20
AATT/AATT	-	3	2																				5
ACAG/CTGT	-	161	71	20	2																		254
ACAT/ATGT	-	58	23	2	1																		84
ACCC/GGGT	-	1																					1
ACCT/AGGT	-	1		1																			2
ACGC/CGTG	-	35	23	1																			59
ACGG/CCGT	-	7	1	3																			11
ACGT/ACGT	-	1		1																			2
ACTC/AGTG	-	1884	1071	41	16			6															3018
ACTG/AGTC	-	15	7	3	1																		26
AGAT/ATCT	-	173	339	3																			515
AGCC/CTGG	-	3																					3
AGCG/CGCT	-	27	8		1																		36
AGGC/CCTG	-	7																					7
AGGG/CCCT	-	24	2																				26
ATCC/ATGG	-	4		1																			5
ATCG/ATCG	-	1	1																				2
ATGC/ATGC	-	2																					2
CCGG/CCGG	-	1																					1
AAAAC/GTTTT	137	5																					142
AAAAG/CTTTT	51																						51
AAAAT/ATTTT	85	1																					86
AAACC/GGTTT	5	1																					6
AAACG/CGTTT	10	1																					11
AAACT/AGTTT	8	1																					9
AAAGC/CTTTG	5																						5
AAAGG/CCTTT	13																						13
AAAGT/ACTTT	60	12																					72
AAATC/ATTTG	11																						11
AAATG/ATTTC	33	1																					34
AAATT/AATTT	24																						24
AACAC/GTGTT	18	2																					20
AACAG/CTGTT	9																						9
AACAT/ATGTT	7																						7
AACCC/GGGTT	3																						3
AACCT/AGGTT	10	1																					11
AACGC/CGTTG	2																						2
AACGG/CCGTT	10	1																					11
AACGT/ACGTT	5																						5
AACTC/AGTTG	5																						5
AACTG/AGTTC	6																						6
AACTT/AAGTT	6	1																					7
AAGAC/CTTGT	4																						4
AAGAG/CTCTT	41	5	2																				48
AAGAT/ATCTT	5																						5
AAGCG/CGCTT	2																						2
AAGCT/AGCTT	3	2																					5
AAGGC/CCTTG	2																						2
AAGGG/CCCTT	3																						3
AAGGT/ACCTT	206	99	1																				306
AAGTC/ACTTG	2																						2
AAGTG/ACTTC	5																						5
AATAC/ATTGT	48	30																					78
AATAG/ATTCT	5	1																					6
AATAT/ATATT	1	2																					3
AATCG/ATTCG	1																						1
AATCT/AGATT	3																						3
AATGC/ATTGC	2		1																				3
AATGG/ATTCC	3																						3
AATGT/ACATT	6	1																					7
AATTC/AATTG	14	1																					15
ACACC/GGTGT	4																						4
ACACG/CGTGT	1																						1
ACACT/AGTGT	1																						1
ACAGC/CTGTG	1																						1
ACAGG/CCTGT	1																						1
ACAGT/ACTGT	3	1																					4
ACATC/ATGTG	3	2	1																				6
ACCAG/CTGGT	1																						1
ACCAT/ATGGT	1	1																					2
ACCCC/GGGGT	1																						1
ACCCG/CGGGT	2																						2
ACCCT/AGGGT	7		1																				8
ACCGC/CGGTG	1																						1
ACCGT/ACGGT	2																						2
ACCTC/AGGTG	94	112	7																				213
ACGAG/CGTCT	2																						2
ACGAT/ATCGT	2																						2
ACGCG/CGCGT	2																						2
ACGCT/AGCGT	2																						2
ACGGG/CCCGT	1																						1
ACGTC/ACGTG	1																						1
ACTAG/AGTCT	3																						3
ACTAT/AGTAT	2																						2
ACTCT/AGAGT	2	1																					3
ACTGG/AGTCC	1																						1
AGAGC/CTCTG	3	2																					5
AGAGG/CCTCT	63	12		2																			77
AGATC/ATCTG	4																						4
AGATG/ATCTC	7	1																					8
AGCCC/CTGGG	3																						3
AGCCG/CGGCT	2																						2
AGCCT/AGGCT	2																						2
AGCGG/CCGCT	1																						1
AGCTC/AGCTG	5																						5
AGGAT/ATCCT	1		1																				2
AGGCC/CCTGG	1																						1
AGGGC/CCCTG	1																						1
AGGGG/CCCCT	12	1																					13
ATATC/ATATG	2																						2
ATCCC/ATGGG	2																						2
ATCCG/ATCGG	2																						2
ATCGC/ATGCG	1																						1
CCCCG/CGGGG	7																						7
CCCGG/CCGGG	73	1																					74
CCGCG/CGCGG	14																						14
AAAAAC/GTTTTT	21																						21
AAAAAG/CTTTTT	12																						12
AAAAAT/ATTTTT	13																						13
AAAACC/GGTTTT	2																						2
AAAACG/CGTTTT	3																						3
AAAACT/AGTTTT	1																						1
AAAAGT/ACTTTT	1																						1
AAAATC/ATTTTG	5																						5
AAAATG/ATTTTC	4																						4
AAAATT/AATTTT	1																						1
AAACAC/GTGTTT	27	1																					28
AAACAG/CTGTTT	10																						10
AAACGT/ACGTTT	1																						1
AAACTC/AGTTTG	2																						2
AAAGAC/CTTTGT	3																						3
AAAGAG/CTCTTT	160	20																					180
AAAGCT/AGCTTT	1	1																					2
AAAGGT/ACCTTT	7	1																					8
AAAGTC/ACTTTG		1																					1
AAAGTG/ACTTTC	1	1																					2
AAAGTT/AACTTT	2																						2
AAATAC/ATTTGT	6	1																					7
AAATAG/ATTTCT	2																						2
AAATCC/ATTTGG	1																						1
AAATGC/ATTTGC	1																						1
AAATGG/ATTTCC	1																						1
AAATGT/ACATTT		1																					1
AAATTC/AATTTG	2																						2
AAATTG/AATTTC	8																						8
AAATTT/AAATTT	3																						3
AACAAG/CTTGTT	2																						2
AACACC/GGTGTT	4																						4
AACACT/AGTGTT	2																						2
AACAGC/CTGTTG	2																						2
AACAGT/ACTGTT	1																						1
AACATC/ATGTTG	1																						1
AACATG/ATGTTC	1																						1
AACATT/AATGTT	3	1																					4
AACCAC/GGTTGT	3		1																				4
AACCAT/ATGGTT	1																						1
AACCCT/AGGGTT	6																						6
AACCGC/CGGTTG	1																						1
AACCGT/ACGGTT	1																						1
AACCTC/AGGTTG	2	1																					3
AACCTG/AGGTTC	1																						1
AACCTT/AAGGTT	260	25																					285
AACGAC/CGTTGT	1																						1
AACGTG/ACGTTC		1																					1
AACTAC/AGTTGT	9	1																					10
AACTCT/AGAGTT	1	2																					3
AACTGT/ACAGTT	2																						2
AACTTC/AAGTTG	1																						1
AACTTG/AAGTTC	1																						1
AAGAAT/ATTCTT	1																						1
AAGAGC/CTCTTG	2																						2
AAGAGG/CCTCTT	4	1																					5
AAGATT/AATCTT	1																						1
AAGCAC/CTTGTG	1																						1
AAGCCT/AGGCTT	25	1																					26
AAGCTT/AAGCTT	1	1																					2
AAGGAC/CCTTGT	1																						1
AAGGAG/CCTTCT	2																						2
AAGGAT/ATCCTT		1																					1
AAGGCT/AGCCTT	2																						2
AAGGGG/CCCCTT	1																						1
AAGGGT/ACCCTT	6																						6
AAGGTC/ACCTTG	2																						2
AAGTAC/ACTTGT	1																						1
AAGTAG/ACTTCT	1	1																					2
AAGTAT/ACTTAT		1																					1
AAGTCC/ACTTGG	1	1																					2
AAGTCG/ACTTCG	1	1																					2
AAGTGC/ACTTGC	2																						2
AAGTGG/ACTTCC	2																						2
AATACT/AGTATT	2																						2
AATCAC/ATTGTG	6																						6
AATCAG/ATTCTG	2																						2
AATCTC/AGATTG	3	3																					6
AATCTG/AGATTC	1																						1
AATGAT/ATCATT	1																						1
AATGCC/ATTGGC	1																						1
AATGGG/ATTCCC	1																						1
AATGTG/ACATTC	5	4	1																				10
AATTAC/AATTGT	9																						9
ACACAG/CTGTGT	98	30																					128
ACACAT/ATGTGT	184	69	9	5																			267
ACACCC/GGGTGT	19		1																				20
ACACGC/CGTGTG	130	11																					141
ACACGG/CCGTGT		1																					1
ACACGT/ACGTGT	10	2																					12
ACACTC/AGTGTG	704	95			5																		804
ACACTG/AGTGTC	4	1																					5
ACAGAT/ATCTGT	2	1																					3
ACAGCC/CTGTGG	14	8																					22
ACAGGG/CCCTGT	1																						1
ACAGTC/ACTGTG	3	1																					4
ACATAG/ATGTCT	21	2																					23
ACATAT/ATATGT	2																						2
ACCACT/AGTGGT	2																						2
ACCATC/ATGGTG	1																						1
ACCCAG/CTGGGT	1																						1
ACCCGC/CGGGTG	1																						1
ACCCTC/AGGGTG	1	3																					4
ACCGCC/CGGTGG	2																						2
ACCGGC/CCGGTG	2																						2
ACCGTG/ACGGTC	2																						2
ACCTCC/AGGTGG	1																						1
ACCTCG/AGGTCG	1																						1
ACCTCT/AGAGGT	7																						7
ACCTGG/AGGTCC		1																					1
ACGACT/AGTCGT	1																						1
ACGAGG/CCTCGT	4																						4
ACGATC/ATCGTG	1																						1
ACGCGC/CGCGTG	4																						4
ACGCTC/AGCGTG	3																						3
ACGGAG/CCGTCT	1																						1
ACGGAT/ATCCGT	1																						1
ACGGCC/CCGTGG	1																						1
ACGGCT/AGCCGT	1	1																					2
ACGTCC/ACGTGG	1																						1
ACTATG/AGTCAT	1																						1
ACTCAG/AGTCTG	7	2	1																				10
ACTCAT/AGTATG	2	2	8																				12
ACTCGC/AGTGCG	1																						1
ACTCTC/AGAGTG	33	8																					41
ACTCTG/AGAGTC	3	2																					5
ACTGAG/AGTCTC	259	38	4																				301
ACTGCC/AGTGGC	1																						1
ACTGGC/AGTGCC	1																						1
ACTGGG/AGTCCC	3																						3
AGAGAT/ATCTCT	248	383	90																				721
AGAGCC/CTCTGG	1																						1
AGAGCG/CGCTCT	20	1	16																				37
AGAGCT/AGCTCT	2																						2
AGAGGC/CCTCTG	32	8																					40
AGAGGG/CCCTCT	57	19																					76
AGATAT/ATATCT	2																						2
AGATCC/ATCTGG	1																						1
AGATCG/ATCTCG	1																						1
AGATGC/ATCTGC	1																						1
AGATGG/ATCTCC	14		1																				15
AGCAGG/CCTGCT	2																						2
AGCCAT/ATGGCT	1																						1
AGCCCG/CGGGCT	1																						1
AGCCCT/AGGGCT		1																					1
AGCCGC/CGGCTG	2																						2
AGCCTC/AGGCTG	7	3																					10
AGCCTG/AGGCTC	1																						1
AGCGGG/CCCGCT	2																						2
AGGATG/ATCCTC	2																						2
AGGCAT/ATGCCT	1																						1
AGGCCC/CCTGGG	4																						4
AGGCGG/CCGCCT	3																						3
AGGGCG/CCCTCG	1																						1
AGGGGC/CCCCTG	1																						1
AGGGGG/CCCCCT	3																						3
ATATCC/ATATGG	1																						1
ATCCGC/ATGCGG	1																						1
ATGCCC/ATGGGC	1	1	1																				3
CCCCGG/CCGGGG	1																						1
CCGGCG/CCGGCG	1																						1
