Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-1/megassr/results/hub_GCA_001602025.1/fasta/hub_GCA_001602025.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              833
Total size of examined sequences (bp):           20385537
Total number of identified SSRs:                 60213
Number of SSR containing sequences:              682
Number of sequences containing more than 1 SSR:  589
Number of SSRs present in compound formation:    23407


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	9922
2	35034
3	6038
4	3605
5	3948
6	1666

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	169	170	171	172	173	174	175	176	177	178	179	180	181	182	183	184	185	186	187	188	189	190	191	192	193	194	195	196	197	198	199	200	201	202	203	204	205	206	207	208	209	210	211	212	213	214	215	216	217	218	219	220	221	222	223	224	225	226	227	228	229	230	231	232	233	234	235	236	237	238	239	240	241	242	243	244	245	246	247	248	249	250	251	252	253	254	255	256	257	258	259	260	261	262	263	264	265	266	267	268	269	270	271	272	273	274	275	276	277	278	279	280	281	282	283	284	285	286	287	288	289	290	291	292	293	294	295	296	297	298	299	300	301	302	303	304	305	306	307	308	309	310	311	312	313	314	315	316	317	318	319	320	321	322	323	324	325	326	327	328	329	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	636	529	452	450	401	301	299	249	213	228	154	126	107	86	58	57	64	35	29	49	44	26	40	22	21	20	7	19	14	14	15	21	10	16	10	10	10	10	10	8	17	12	8	6	7	8	6	3	6	3	20	7	4	4	3	5	8	4	1	2	2	2	6	1	2	3	2	7	2	2	3	1	2	2	1	1	1	2	4	1	2	2	3	2	1	3	1	2	2	1	1	1		3	2	1		3		2		2			1	1	1	1			1	1			2		2		1			1					1			1	3				1							1		1							1													1																																																																																																																																																			5107
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	590	452	438	447	350	288	296	253	220	185	152	138	101	81	56	66	59	39	40	34	37	14	24	16	19	13	14	19	21	10	15	11	7	13	7	9	5	8	7	2	16	9	7	5	8	5	10	1	9	8	24	9	4	5	5	3	6	4	8	3	4	2		5	5		2	4	1	3	3	1	2	4	1	2	2	1	3	2	2	4	3	1	3			1			1	3	2		1	4	1	2	3		1	2	1	2		1	3	1		1	2					1	2		1	1	1				1	1					1							1	1			1		1		1											1																																			1															1																																																																																																							1	4815
AC	-	-	-	25	14	11	2	3	2																																																																																																																																																																																																																																																																																																																															57
AG	-	-	-	4	3	1			1																																																																																																																																																																																																																																																																																																																															9
AT	-	-	-	3793	2696	2199	1980	1691	1638	1562	1304	1137	1003	835	624	542	465	353	271	195	141	88	58	38	22	27	13	7	5	2	4	3		3	1	2	2		2			3	3	1		1																																																																																																																																																																																																																																																																																										22714
CA	-	-	-	7	3	6	1						1																																																																																																																																																																																																																																																																																																																											18
CT	-	-	-	1	3		1	1																																																																																																																																																																																																																																																																																																																																6
GA	-	-	-	1																																																																																																																																																																																																																																																																																																																																				1
GT	-	-	-	12	10	8	1			1																																																																																																																																																																																																																																																																																																																														32
TA	-	-	-	2760	1801	1297	1052	896	777	701	597	497	399	314	265	201	176	144	100	63	35	24	16	14	7	7	3	1	2	2	1		1	1												2																																																																																																																																																																																																																																																																																										12156
TC	-	-	-	4	2	1	1																																																																																																																																																																																																																																																																																																																																	8
TG	-	-	-	19	10	2	1	1																																																																																																																																																																																																																																																																																																																																33
AAC	-	-	18	8	3		1	1																																																																																																																																																																																																																																																																																																																																31
AAG	-	-	18	12	3	1		1				2																																																																																																																																																																																																																																																																																																																												37
AAT	-	-	401	240	169	103	74	36	22	20	14	4	3	2	1	1			1											1																																																																																																																																																																																																																																																																																																										1092
ACA	-	-	8	3	1	1																																																																																																																																																																																																																																																																																																																																		13
ACC	-	-	1																																																																																																																																																																																																																																																																																																																																					1
ACT	-	-	8	5						1																																																																																																																																																																																																																																																																																																																														14
AGA	-	-	8	3	2	1																																																																																																																																																																																																																																																																																																																																		14
AGC	-	-	2																																																																																																																																																																																																																																																																																																																																					2
AGG	-	-	1																																																																																																																																																																																																																																																																																																																																					1
AGT	-	-	4	4	1	1				1																																																																																																																																																																																																																																																																																																																														11
ATA	-	-	401	210	160	98	60	36	19	14	6	5	4	3		1	1	2	1		1																																																																																																																																																																																																																																																																																																																			1022
ATC	-	-	41	11	1	1	1					1																																																																																																																																																																																																																																																																																																																												56
ATG	-	-	39	21	6	3	2	1																																																																																																																																																																																																																																																																																																																																72
ATT	-	-	269	145	113	93	59	34	22	14	9	4	1	2		1	1										1																																																																																																																																																																																																																																																																																																													768
CAA	-	-	10	2	5	1			1																																																																																																																																																																																																																																																																																																																															19
CAC	-	-		1																																																																																																																																																																																																																																																																																																																																				1
CAT	-	-	6	4	1																																																																																																																																																																																																																																																																																																																																			11
CCA	-	-	2																																																																																																																																																																																																																																																																																																																																					2
CCT	-	-			1																																																																																																																																																																																																																																																																																																																																			1
CTA	-	-	4						1																																																																																																																																																																																																																																																																																																																															5
CTT	-	-	4	2		1			1																																																																																																																																																																																																																																																																																																																															8
GAA	-	-	20	9	10		1	2				1																																																																																																																																																																																																																																																																																																																												43
GAG	-	-	5																																																																																																																																																																																																																																																																																																																																					5
GAT	-	-	19	14	2		1			1				1																																																																																																																																																																																																																																																																																																																										38
GGA	-	-	2																																																																																																																																																																																																																																																																																																																																					2
GGT	-	-	1																																																																																																																																																																																																																																																																																																																																					1
GTA	-	-	5	2	2	1																																																																																																																																																																																																																																																																																																																																		10
GTG	-	-	1																																																																																																																																																																																																																																																																																																																																					1
GTT	-	-	3	3	2					1																																																																																																																																																																																																																																																																																																																														9
TAA	-	-	185	130	97	53	24	14	9	12	4	6	2	1	2	1	1																																																																																																																																																																																																																																																																																																																							541
TAC	-	-	16	6	1	4		1																				1																																																																																																																																																																																																																																																																																																												29
TAG	-	-	16	7	1	1	1																																																																																																																																																																																																																																																																																																																																	26
TAT	-	-	480	294	193	133	73	43	16	9	8	5		2		1			2	1		2		2										1																																																																																																																																																																																																																																																																																																						1265
TCA	-	-	28	16	3	2	2				1																																																																																																																																																																																																																																																																																																																													52
TCC	-	-		2																																																																																																																																																																																																																																																																																																																																				2
TCG	-	-	1																																																																																																																																																																																																																																																																																																																																					1
TCT	-	-	19	10	1	1		1																																																																																																																																																																																																																																																																																																																																32
TGA	-	-	12	9	3	2																																																																																																																																																																																																																																																																																																																																		26
TGG	-	-	1																																																																																																																																																																																																																																																																																																																																					1
TGT	-	-	10	7	1	2																																																																																																																																																																																																																																																																																																																																		20
TTA	-	-	265	144	98	54	44	32	12	15	4	3		3	1	3		1				1																																																																																																																																																																																																																																																																																																																		680
TTC	-	-	31	12	3	1	1																																																																																																																																																																																																																																																																																																																																	48
TTG	-	-	13	8	1	1	2																																																																																																																																																																																																																																																																																																																																	25
AAAC	-	12	1	1																																																																																																																																																																																																																																																																																																																																				14
AAAG	-	5		2	1	2																																																																																																																																																																																																																																																																																																																																		10
AAAT	-	343	173	80	42	16	8	3	2	2	2	1																																																																																																																																																																																																																																																																																																																												672
AACA	-	1																																																																																																																																																																																																																																																																																																																																						1
AAGA	-		1		1																																																																																																																																																																																																																																																																																																																																			2
AATA	-	220	126	55	16	6	6	3	4	3	4		1				1																																																																																																																																																																																																																																																																																																																							445
AATC	-	1																																																																																																																																																																																																																																																																																																																																						1
AATG	-	3	1				1																																																																																																																																																																																																																																																																																																																																	5
AATT	-	7	1		1																																																																																																																																																																																																																																																																																																																																			9
ACAA	-	2																																																																																																																																																																																																																																																																																																																																						2
ACAT	-	18	3	2																																																																																																																																																																																																																																																																																																																																				23
AGAA	-	2																																																																																																																																																																																																																																																																																																																																						2
AGAT	-	1																																																																																																																																																																																																																																																																																																																																						1
ATAA	-	264	78	22	12	12	4	3	2	1																																																																																																																																																																																																																																																																																																																														398
ATAC	-	39	15	6	4	1																																																																																																																																																																																																																																																																																																																																		65
ATGA	-	1	1																																																																																																																																																																																																																																																																																																																																					2
ATGG	-	1																																																																																																																																																																																																																																																																																																																																						1
ATGT	-	7	5	4		1																																																																																																																																																																																																																																																																																																																																		17
ATTA	-	5	1																																																																																																																																																																																																																																																																																																																																					6
ATTC	-	2							1																																																																																																																																																																																																																																																																																																																															3
ATTG	-	2																																																																																																																																																																																																																																																																																																																																						2
ATTT	-	177	77	31	9	5	6	1	3																																																																																																																																																																																																																																																																																																																															309
CAAA	-	1																																																																																																																																																																																																																																																																																																																																						1
CATA	-	11	4	4																																																																																																																																																																																																																																																																																																																																				19
CTTA	-				1																																																																																																																																																																																																																																																																																																																																			1
CTTC	-	1	1																																																																																																																																																																																																																																																																																																																																					2
CTTT	-	1	1																																																																																																																																																																																																																																																																																																																																					2
GAAA	-	3	1																																																																																																																																																																																																																																																																																																																																					4
GAAT	-							1																																																																																																																																																																																																																																																																																																																																1
GTAT	-	12	1	1	1																																																																																																																																																																																																																																																																																																																																			15
TAAA	-	94	44	20	6	1	2																																																																																																																																																																																																																																																																																																																																	167
TAAT	-	5	1																																																																																																																																																																																																																																																																																																																																					6
TACA	-	6	1					1																																																																																																																																																																																																																																																																																																																																8
TAGC	-	1																																																																																																																																																																																																																																																																																																																																						1
TATC	-					1																																																																																																																																																																																																																																																																																																																																		1
TATG	-	23	11	4	2			1												1																																																																																																																																																																																																																																																																																																																				42
TATT	-	355	138	76	22	16	5	3		1	1		1																																																																																																																																																																																																																																																																																																																											618
TGAA	-	1																																																																																																																																																																																																																																																																																																																																						1
TGAT	-	1																																																																																																																																																																																																																																																																																																																																						1
TGTA	-	10	4	1	1																																																																																																																																																																																																																																																																																																																																			16
TGTT	-	3	1																																																																																																																																																																																																																																																																																																																																					4
TTAA	-	4	1																																																																																																																																																																																																																																																																																																																																					5
TTAT	-	206	81	33	16	7	6	1	1	2	1	1			1																																																																																																																																																																																																																																																																																																																									356
TTCA	-	1																																																																																																																																																																																																																																																																																																																																						1
TTCC	-	1																																																																																																																																																																																																																																																																																																																																						1
TTCT	-	2																																																																																																																																																																																																																																																																																																																																						2
TTGT	-	4			1																																																																																																																																																																																																																																																																																																																																			5
TTTA	-	196	57	37	15	5	2	2		2	1				2																																																																																																																																																																																																																																																																																																																									319
TTTC	-	6	1				1																																																																																																																																																																																																																																																																																																																																	8
TTTG	-	6		1		1																																																																																																																																																																																																																																																																																																																																		8
AAAAC	12	8	3																																																																																																																																																																																																																																																																																																																																					23
AAAAG	36	14	2																																																																																																																																																																																																																																																																																																																																					52
AAAAT	387	141	59	16	8	1																																																																																																																																																																																																																																																																																																																																		612
AAACA	6	1																																																																																																																																																																																																																																																																																																																																						7
AAAGA	11		1	1																																																																																																																																																																																																																																																																																																																																				13
AAATA	119	50	18	1		1																																																																																																																																																																																																																																																																																																																																		189
AAATC	2																																																																																																																																																																																																																																																																																																																																							2
AAATG	4	1	2																																																																																																																																																																																																																																																																																																																																					7
AAATT	12	4	5																																																																																																																																																																																																																																																																																																																																					21
AACAT	1																																																																																																																																																																																																																																																																																																																																							1
AAGAA	8	2																																																																																																																																																																																																																																																																																																																																						10
AATAA	100	29	7	1		1																																																																																																																																																																																																																																																																																																																																		138
AATAT	66	12	4	2			1																																																																																																																																																																																																																																																																																																																																	85
AATTA	5																																																																																																																																																																																																																																																																																																																																							5
AATTC		1																																																																																																																																																																																																																																																																																																																																						1
AATTT	11	1																																																																																																																																																																																																																																																																																																																																						12
ACAAA	1	1																																																																																																																																																																																																																																																																																																																																						2
AGAAA	9	2	1																																																																																																																																																																																																																																																																																																																																					12
AGAAG	1																																																																																																																																																																																																																																																																																																																																							1
AGAAT	1																																																																																																																																																																																																																																																																																																																																							1
ATAAA	72	20	6		1																																																																																																																																																																																																																																																																																																																																			99
ATAAC	1																																																																																																																																																																																																																																																																																																																																							1
ATAAG	1																																																																																																																																																																																																																																																																																																																																							1
ATAAT	56	8	2	2		1	1				1						1																																																																																																																																																																																																																																																																																																																							72
ATATA	299	32	15	4			1																																																																																																																																																																																																																																																																																																																																	351
ATATC	3																																																																																																																																																																																																																																																																																																																																							3
ATATG	1	2																																																																																																																																																																																																																																																																																																																																						3
ATATT	45	12	3	3	1		1																																																																																																																																																																																																																																																																																																																																	65
ATCAA	1	1																																																																																																																																																																																																																																																																																																																																						2
ATCAT	2					1																																																																																																																																																																																																																																																																																																																																		3
ATGAA	1																																																																																																																																																																																																																																																																																																																																							1
ATGAT			1																																																																																																																																																																																																																																																																																																																																					1
ATGTT	1																																																																																																																																																																																																																																																																																																																																							1
ATTAA	3	1	1																																																																																																																																																																																																																																																																																																																																					5
ATTAC		1																																																																																																																																																																																																																																																																																																																																						1
ATTAG	1																																																																																																																																																																																																																																																																																																																																							1
ATTAT	38	3	1						1		1																																																																																																																																																																																																																																																																																																																													44
ATTGA	1																																																																																																																																																																																																																																																																																																																																							1
ATTTA	10	4																																																																																																																																																																																																																																																																																																																																						14
ATTTC	7	2	1																																																																																																																																																																																																																																																																																																																																					10
ATTTG	1																																																																																																																																																																																																																																																																																																																																							1
ATTTT	104	27	11	4	1			1																																																																																																																																																																																																																																																																																																																																148
CAAAA	2																																																																																																																																																																																																																																																																																																																																							2
CAAAT	1																																																																																																																																																																																																																																																																																																																																							1
CATTT	3																																																																																																																																																																																																																																																																																																																																							3
CTATT		1																																																																																																																																																																																																																																																																																																																																						1
CTTTT	6																																																																																																																																																																																																																																																																																																																																							6
GAAAA	12	3		1																																																																																																																																																																																																																																																																																																																																				16
GAAAG	1																																																																																																																																																																																																																																																																																																																																							1
GAAAT	2																																																																																																																																																																																																																																																																																																																																							2
GTATT	1																																																																																																																																																																																																																																																																																																																																							1
GTGTT		1																																																																																																																																																																																																																																																																																																																																						1
GTTGT		1																																																																																																																																																																																																																																																																																																																																						1
GTTTG	1																																																																																																																																																																																																																																																																																																																																							1
GTTTT	1																																																																																																																																																																																																																																																																																																																																							1
TAAAA	70	17	7	1																																																																																																																																																																																																																																																																																																																																				95
TAAAT	10	2																																																																																																																																																																																																																																																																																																																																						12
TAATA	25	2	2	1		1		2																																																																																																																																																																																																																																																																																																																																33
TAATT	5	2																																																																																																																																																																																																																																																																																																																																						7
TACAA	1																																																																																																																																																																																																																																																																																																																																							1
TATAA	28	5	1																																																																																																																																																																																																																																																																																																																																					34
TATAT	234	34	6	2	4			2			1	3																																																																																																																																																																																																																																																																																																																												286
TATGA	1																																																																																																																																																																																																																																																																																																																																							1
TATTA	41	18	6			2		2						1																																																																																																																																																																																																																																																																																																																										70
TATTC	1																																																																																																																																																																																																																																																																																																																																							1
TATTG	1																																																																																																																																																																																																																																																																																																																																							1
TATTT	124	32	11	6	1																																																																																																																																																																																																																																																																																																																																			174
TCAAA	3																																																																																																																																																																																																																																																																																																																																							3
TCTAT	1																																																																																																																																																																																																																																																																																																																																							1
TCTTA	1																																																																																																																																																																																																																																																																																																																																							1
TCTTC	1																																																																																																																																																																																																																																																																																																																																							1
TCTTT	13	2																																																																																																																																																																																																																																																																																																																																						15
TGAAA	1																																																																																																																																																																																																																																																																																																																																							1
TGATA	1																																																																																																																																																																																																																																																																																																																																							1
TGATT	1																																																																																																																																																																																																																																																																																																																																							1
TGTAT	2																																																																																																																																																																																																																																																																																																																																							2
TGTTG	1																																																																																																																																																																																																																																																																																																																																							1
TGTTT	8	2	1		1			1																																																																																																																																																																																																																																																																																																																																13
TTAAA	7	1																																																																																																																																																																																																																																																																																																																																						8
TTAAT	5			1																																																																																																																																																																																																																																																																																																																																				6
TTACT	1																																																																																																																																																																																																																																																																																																																																							1
TTATA	67	6	3	1																																																																																																																																																																																																																																																																																																																																				77
TTATC	2																																																																																																																																																																																																																																																																																																																																							2
TTATG	1																																																																																																																																																																																																																																																																																																																																							1
TTATT	180	57	25	5	3																																																																																																																																																																																																																																																																																																																																			270
TTCAT	1																																																																																																																																																																																																																																																																																																																																							1
TTCTT	18																																																																																																																																																																																																																																																																																																																																							18
TTGAT	1																																																																																																																																																																																																																																																																																																																																							1
TTGTA	1																																																																																																																																																																																																																																																																																																																																							1
TTGTT	5																																																																																																																																																																																																																																																																																																																																							5
TTTAA	9	2																																																																																																																																																																																																																																																																																																																																						11
TTTAT	185	55	15	2	1			1																																																																																																																																																																																																																																																																																																																																259
TTTCA	4	2																																																																																																																																																																																																																																																																																																																																						6
TTTCT	8	3	3																																																																																																																																																																																																																																																																																																																																					14
TTTGA	1	1																																																																																																																																																																																																																																																																																																																																						2
TTTGG	1																																																																																																																																																																																																																																																																																																																																							1
TTTGT	7																																																																																																																																																																																																																																																																																																																																							7
TTTTA	250	83	32	8	2		1																																																																																																																																																																																																																																																																																																																																	376
TTTTC	37	9	1			1																																																																																																																																																																																																																																																																																																																																		48
TTTTG	10	7	1									1																																																																																																																																																																																																																																																																																																																												19
AAAAAC	5	3																																																																																																																																																																																																																																																																																																																																						8
AAAAAG	19	5																																																																																																																																																																																																																																																																																																																																						24
AAAAAT	79	34	4	1																																																																																																																																																																																																																																																																																																																																				118
AAAAGA	12																																																																																																																																																																																																																																																																																																																																							12
AAAAGC	1																																																																																																																																																																																																																																																																																																																																							1
AAAAGT		1																																																																																																																																																																																																																																																																																																																																						1
AAAATA	45	16	1	2		1																																																																																																																																																																																																																																																																																																																																		65
AAAATC	1																																																																																																																																																																																																																																																																																																																																							1
AAAATG	1	1																																																																																																																																																																																																																																																																																																																																						2
AAAATT	8		1																																																																																																																																																																																																																																																																																																																																					9
AAACAA	1	1																																																																																																																																																																																																																																																																																																																																						2
AAACAT	3	1																																																																																																																																																																																																																																																																																																																																						4
AAAGAA	7	2																																																																																																																																																																																																																																																																																																																																						9
AAAGAC	1																																																																																																																																																																																																																																																																																																																																							1
AAAGAT		1																																																																																																																																																																																																																																																																																																																																						1
AAATAA	14	7	2	1																																																																																																																																																																																																																																																																																																																																				24
AAATAC	1	1																																																																																																																																																																																																																																																																																																																																						2
AAATAT	34	9	3			1																																																																																																																																																																																																																																																																																																																																		47
AAATCA	1																																																																																																																																																																																																																																																																																																																																							1
AAATGA	4	1	2																																																																																																																																																																																																																																																																																																																																					7
AAATGG	4																																																																																																																																																																																																																																																																																																																																							4
AAATGT	2																																																																																																																																																																																																																																																																																																																																							2
AAATTA	1																																																																																																																																																																																																																																																																																																																																							1
AAATTG		1																																																																																																																																																																																																																																																																																																																																						1
AAATTT	1																																																																																																																																																																																																																																																																																																																																							1
AACAAA	2	1																																																																																																																																																																																																																																																																																																																																						3
AACAAG	1		1																																																																																																																																																																																																																																																																																																																																					2
AACACA				1																																																																																																																																																																																																																																																																																																																																				1
AACATA	1																																																																																																																																																																																																																																																																																																																																							1
AACATT	1																																																																																																																																																																																																																																																																																																																																							1
AACTGC	1																																																																																																																																																																																																																																																																																																																																							1
AAGAAA	8																																																																																																																																																																																																																																																																																																																																							8
AAGAAT	2																																																																																																																																																																																																																																																																																																																																							2
AAGAGG	1																																																																																																																																																																																																																																																																																																																																							1
AAGATA	1																																																																																																																																																																																																																																																																																																																																							1
AAGATG	1		1																																																																																																																																																																																																																																																																																																																																					2
AAGGAA					1																																																																																																																																																																																																																																																																																																																																			1
AATAAA	8	4	2																																																																																																																																																																																																																																																																																																																																					14
AATAAC	3	1																																																																																																																																																																																																																																																																																																																																						4
AATAAG			1																																																																																																																																																																																																																																																																																																																																					1
AATACA	1																																																																																																																																																																																																																																																																																																																																							1
AATACG	1																																																																																																																																																																																																																																																																																																																																							1
AATAGT	4	1																																																																																																																																																																																																																																																																																																																																						5
AATATA	34	6	2	1																																																																																																																																																																																																																																																																																																																																				43
AATATC	1																																																																																																																																																																																																																																																																																																																																							1
AATATG	1																																																																																																																																																																																																																																																																																																																																							1
AATATT	5																																																																																																																																																																																																																																																																																																																																							5
AATCAT	1																																																																																																																																																																																																																																																																																																																																							1
AATGAA		1																																																																																																																																																																																																																																																																																																																																						1
AATGAT	1																																																																																																																																																																																																																																																																																																																																							1
AATTAA	1																																																																																																																																																																																																																																																																																																																																							1
AATTAC	1																																																																																																																																																																																																																																																																																																																																							1
AATTAG	1																																																																																																																																																																																																																																																																																																																																							1
AATTAT	2																																																																																																																																																																																																																																																																																																																																							2
AATTTA	1																																																																																																																																																																																																																																																																																																																																							1
AATTTT	2		1																																																																																																																																																																																																																																																																																																																																					3
ACAAAA	1		2																																																																																																																																																																																																																																																																																																																																					3
ACAAAC	2																																																																																																																																																																																																																																																																																																																																							2
ACACCA	1																																																																																																																																																																																																																																																																																																																																							1
ACATAC					1																																																																																																																																																																																																																																																																																																																																			1
ACATAT	7	2																																																																																																																																																																																																																																																																																																																																						9
ACATTA		1																																																																																																																																																																																																																																																																																																																																						1
ACTATT	2																																																																																																																																																																																																																																																																																																																																							2
AGAAAA	6																																																																																																																																																																																																																																																																																																																																							6
AGAGAA	1	1																																																																																																																																																																																																																																																																																																																																						2
AGAGAT	2																																																																																																																																																																																																																																																																																																																																							2
AGTAGA	1																																																																																																																																																																																																																																																																																																																																							1
AGTGAT	2																																																																																																																																																																																																																																																																																																																																							2
ATAAAA	17	5	1	1																																																																																																																																																																																																																																																																																																																																				24
ATAAAC	6	3	1																																																																																																																																																																																																																																																																																																																																					10
ATAAAG	2																																																																																																																																																																																																																																																																																																																																							2
ATAAAT	48	15	1		1																																																																																																																																																																																																																																																																																																																																			65
ATAACA		1																																																																																																																																																																																																																																																																																																																																						1
ATAATG	1																																																																																																																																																																																																																																																																																																																																							1
ATAATT	3																																																																																																																																																																																																																																																																																																																																							3
ATACAC	1																																																																																																																																																																																																																																																																																																																																							1
ATACAT	8																																																																																																																																																																																																																																																																																																																																							8
ATAGAA		1																																																																																																																																																																																																																																																																																																																																						1
ATAGTA	4																																																																																																																																																																																																																																																																																																																																							4
ATAGTT		1																																																																																																																																																																																																																																																																																																																																						1
ATATAA	37	1	1																																																																																																																																																																																																																																																																																																																																					39
ATATAC	7	4																																																																																																																																																																																																																																																																																																																																						11
ATATAG	3																																																																																																																																																																																																																																																																																																																																							3
ATATCC	1																																																																																																																																																																																																																																																																																																																																							1
ATATCT	1																																																																																																																																																																																																																																																																																																																																							1
ATATGT	2	1																																																																																																																																																																																																																																																																																																																																						3
ATATTA	3				1																																																																																																																																																																																																																																																																																																																																			4
ATATTC	1																																																																																																																																																																																																																																																																																																																																							1
ATATTT	19	5	3		2																																																																																																																																																																																																																																																																																																																																			29
ATCAAG	1																																																																																																																																																																																																																																																																																																																																							1
ATCATT	4																																																																																																																																																																																																																																																																																																																																							4
ATCTTC				1																																																																																																																																																																																																																																																																																																																																				1
ATGAAA	4	2				1																																																																																																																																																																																																																																																																																																																																		7
ATGAAC	1																																																																																																																																																																																																																																																																																																																																							1
ATGAAG	2	1																																																																																																																																																																																																																																																																																																																																						3
ATGATA	3	1																																																																																																																																																																																																																																																																																																																																						4
ATGATT	1																																																																																																																																																																																																																																																																																																																																							1
ATGTAT	3	1																																																																																																																																																																																																																																																																																																																																						4
ATTAAA	3																																																																																																																																																																																																																																																																																																																																							3
ATTAAC				1																																																																																																																																																																																																																																																																																																																																				1
ATTAAT	3																																																																																																																																																																																																																																																																																																																																							3
ATTACT	2																																																																																																																																																																																																																																																																																																																																							2
ATTATA	11	2																																																																																																																																																																																																																																																																																																																																						13
ATTATC	5																																																																																																																																																																																																																																																																																																																																							5
ATTGTT	2																																																																																																																																																																																																																																																																																																																																							2
ATTTAA	2																																																																																																																																																																																																																																																																																																																																							2
ATTTAT	21	6		1																																																																																																																																																																																																																																																																																																																																				28
ATTTCT	1																																																																																																																																																																																																																																																																																																																																							1
ATTTTA	7	2	1																																																																																																																																																																																																																																																																																																																																					10
ATTTTC	5		1																																																																																																																																																																																																																																																																																																																																					6
ATTTTG	2																																																																																																																																																																																																																																																																																																																																							2
ATTTTT	16	4	2	1																																																																																																																																																																																																																																																																																																																																				23
CAAAAA	1	1																																																																																																																																																																																																																																																																																																																																						2
CAAAAT	1																																																																																																																																																																																																																																																																																																																																							1
CAACAG	1																																																																																																																																																																																																																																																																																																																																							1
CAACAT		1																																																																																																																																																																																																																																																																																																																																						1
CAAGAT		1																																																																																																																																																																																																																																																																																																																																						1
CACAAA		1																																																																																																																																																																																																																																																																																																																																						1
CACGAT	1																																																																																																																																																																																																																																																																																																																																							1
CATAAA						1																																																																																																																																																																																																																																																																																																																																		1
CATAAT	1																																																																																																																																																																																																																																																																																																																																							1
CATATA	1																																																																																																																																																																																																																																																																																																																																							1
CATCAA	1																																																																																																																																																																																																																																																																																																																																							1
CATCAC	1																																																																																																																																																																																																																																																																																																																																							1
CATCTA	1																																																																																																																																																																																																																																																																																																																																							1
CATTAC	1																																																																																																																																																																																																																																																																																																																																							1
CATTTA		1	1																																																																																																																																																																																																																																																																																																																																					2
CATTTT	1		1																																																																																																																																																																																																																																																																																																																																					2
CCATCT	1																																																																																																																																																																																																																																																																																																																																							1
CTATTA	1	1																																																																																																																																																																																																																																																																																																																																						2
CTCATT	1																																																																																																																																																																																																																																																																																																																																							1
CTCCTT	1																																																																																																																																																																																																																																																																																																																																							1
CTTCAT	2																																																																																																																																																																																																																																																																																																																																							2
CTTTCA	1																																																																																																																																																																																																																																																																																																																																							1
CTTTCT	1																																																																																																																																																																																																																																																																																																																																							1
CTTTTA	1																																																																																																																																																																																																																																																																																																																																							1
CTTTTT	6	2	1																																																																																																																																																																																																																																																																																																																																					9
GAAAAA	8	1	1	1																																																																																																																																																																																																																																																																																																																																				11
GAAAAG	4			1																																																																																																																																																																																																																																																																																																																																				5
GAAAAT	4	1		1																																																																																																																																																																																																																																																																																																																																				6
GAAAGG	1																																																																																																																																																																																																																																																																																																																																							1
GAAATA	1	1																																																																																																																																																																																																																																																																																																																																						2
GAAGAG	1																																																																																																																																																																																																																																																																																																																																							1
GAAGAT			1																																																																																																																																																																																																																																																																																																																																					1
GAATGA	1																																																																																																																																																																																																																																																																																																																																							1
GACGAA	1																																																																																																																																																																																																																																																																																																																																							1
GAGAAC	1																																																																																																																																																																																																																																																																																																																																							1
GATAAA	1																																																																																																																																																																																																																																																																																																																																							1
GATAAG	1																																																																																																																																																																																																																																																																																																																																							1
GATAAT	1																																																																																																																																																																																																																																																																																																																																							1
GATATA	1																																																																																																																																																																																																																																																																																																																																							1
GATTTT	1																																																																																																																																																																																																																																																																																																																																							1
GCTGTT	1																																																																																																																																																																																																																																																																																																																																							1
GGACGT	1																																																																																																																																																																																																																																																																																																																																							1
GTAAAT	1																																																																																																																																																																																																																																																																																																																																							1
GTAATT	1																																																																																																																																																																																																																																																																																																																																							1
GTATAT	1																																																																																																																																																																																																																																																																																																																																							1
GTATGT	1																																																																																																																																																																																																																																																																																																																																							1
GTATTT	1				1																																																																																																																																																																																																																																																																																																																																			2
GTCTGT	1																																																																																																																																																																																																																																																																																																																																							1
GTGTAA	1																																																																																																																																																																																																																																																																																																																																							1
GTTGTA	1																																																																																																																																																																																																																																																																																																																																							1
GTTTTA	1																																																																																																																																																																																																																																																																																																																																							1
TAAAAA	13	5	2	1																																																																																																																																																																																																																																																																																																																																				21
TAAAAC		1																																																																																																																																																																																																																																																																																																																																						1
TAAAAT	2																																																																																																																																																																																																																																																																																																																																							2
TAAATA	9	2	1																																																																																																																																																																																																																																																																																																																																					12
TAAATC	1																																																																																																																																																																																																																																																																																																																																							1
TAACAA	1																																																																																																																																																																																																																																																																																																																																							1
TAAGTG		1																																																																																																																																																																																																																																																																																																																																						1
TAATAG	8	4																																																																																																																																																																																																																																																																																																																																						12
TAATAT	4																																																																																																																																																																																																																																																																																																																																							4
TAATGA	1		1																																																																																																																																																																																																																																																																																																																																					2
TAATTA		1																																																																																																																																																																																																																																																																																																																																						1
TAATTC	1																																																																																																																																																																																																																																																																																																																																							1
TAATTG	1																																																																																																																																																																																																																																																																																																																																							1
TAATTT	2																																																																																																																																																																																																																																																																																																																																							2
TACAAC		1																																																																																																																																																																																																																																																																																																																																						1
TACAAT	1																																																																																																																																																																																																																																																																																																																																							1
TACATA	2		1																																																																																																																																																																																																																																																																																																																																					3
TACATC	1																																																																																																																																																																																																																																																																																																																																							1
TACTAT	2																																																																																																																																																																																																																																																																																																																																							2
TAGTAA		1																																																																																																																																																																																																																																																																																																																																						1
TAGTGG	2																																																																																																																																																																																																																																																																																																																																							2
TATAAA	7	2				1																																																																																																																																																																																																																																																																																																																																		10
TATAAT	3																																																																																																																																																																																																																																																																																																																																							3
TATACT	1																																																																																																																																																																																																																																																																																																																																							1
TATATG	8																																																																																																																																																																																																																																																																																																																																							8
TATATT	62	5	3	1																																																																																																																																																																																																																																																																																																																																				71
TATCAT	1																																																																																																																																																																																																																																																																																																																																							1
TATCTA	1																																																																																																																																																																																																																																																																																																																																							1
TATCTC	1																																																																																																																																																																																																																																																																																																																																							1
TATCTT	3																																																																																																																																																																																																																																																																																																																																							3
TATGAA	1																																																																																																																																																																																																																																																																																																																																							1
TATGTA	5	1																																																																																																																																																																																																																																																																																																																																						6
TATGTT	4																																																																																																																																																																																																																																																																																																																																							4
TATTAA	7	1																																																																																																																																																																																																																																																																																																																																						8
TATTAC	13	1	1																																																																																																																																																																																																																																																																																																																																					15
TATTCT	1																																																																																																																																																																																																																																																																																																																																							1
TATTGT		1																																																																																																																																																																																																																																																																																																																																						1
TATTTA	51	13	3																																																																																																																																																																																																																																																																																																																																					67
TATTTG		1	1																																																																																																																																																																																																																																																																																																																																					2
TATTTT	42	11	3	1																																																																																																																																																																																																																																																																																																																																				57
TCATAA	1																																																																																																																																																																																																																																																																																																																																							1
TCATAT	1																																																																																																																																																																																																																																																																																																																																							1
TCATCT	2																																																																																																																																																																																																																																																																																																																																							2
TCATTA	1	2																																																																																																																																																																																																																																																																																																																																						3
TCATTG	1																																																																																																																																																																																																																																																																																																																																							1
TCCTCT	1																																																																																																																																																																																																																																																																																																																																							1
TCTGCA	1																																																																																																																																																																																																																																																																																																																																							1
TCTTCA	2	1	1																																																																																																																																																																																																																																																																																																																																					4
TCTTCC	1																																																																																																																																																																																																																																																																																																																																							1
TCTTTA	1																																																																																																																																																																																																																																																																																																																																							1
TCTTTC	2																																																																																																																																																																																																																																																																																																																																							2
TCTTTT	5	1																																																																																																																																																																																																																																																																																																																																						6
TGAAAA	3	1																																																																																																																																																																																																																																																																																																																																						4
TGATAA	1	1																																																																																																																																																																																																																																																																																																																																						2
TGATGG	1																																																																																																																																																																																																																																																																																																																																							1
TGGTTG	1																																																																																																																																																																																																																																																																																																																																							1
TGTAAA	1																																																																																																																																																																																																																																																																																																																																							1
TGTATA	3																																																																																																																																																																																																																																																																																																																																							3
TGTGCA		1																																																																																																																																																																																																																																																																																																																																						1
TGTTTA	1	1																																																																																																																																																																																																																																																																																																																																						2
TGTTTG		1																																																																																																																																																																																																																																																																																																																																						1
TGTTTT	2																																																																																																																																																																																																																																																																																																																																							2
TTAATA	4																																																																																																																																																																																																																																																																																																																																							4
TTACAA	1																																																																																																																																																																																																																																																																																																																																							1
TTACTA	1																																																																																																																																																																																																																																																																																																																																							1
TTATAA	2																																																																																																																																																																																																																																																																																																																																							2
TTATAT	13	1																																																																																																																																																																																																																																																																																																																																						14
TTATCG	1																																																																																																																																																																																																																																																																																																																																							1
TTATCT	1																																																																																																																																																																																																																																																																																																																																							1
TTATTC	2	2																																																																																																																																																																																																																																																																																																																																						4
TTATTG	3																																																																																																																																																																																																																																																																																																																																							3
TTATTT	35	9																																																																																																																																																																																																																																																																																																																																						44
TTCATC		1																																																																																																																																																																																																																																																																																																																																						1
TTCATT	1																																																																																																																																																																																																																																																																																																																																							1
TTCCTG	1																																																																																																																																																																																																																																																																																																																																							1
TTCTTA	2																																																																																																																																																																																																																																																																																																																																							2
TTCTTT	5	1	1																																																																																																																																																																																																																																																																																																																																					7
TTGATT		1																																																																																																																																																																																																																																																																																																																																						1
TTGTGT		1																																																																																																																																																																																																																																																																																																																																						1
TTGTTA	3	1																																																																																																																																																																																																																																																																																																																																						4
TTGTTC	1																																																																																																																																																																																																																																																																																																																																							1
TTGTTT	3																																																																																																																																																																																																																																																																																																																																							3
TTTAAT	3																																																																																																																																																																																																																																																																																																																																							3
TTTACT	1																																																																																																																																																																																																																																																																																																																																							1
TTTAGT	1																																																																																																																																																																																																																																																																																																																																							1
TTTATA	8		1																																																																																																																																																																																																																																																																																																																																					9
TTTATG	5	2	1																																																																																																																																																																																																																																																																																																																																					8
TTTATT	45	8	4																																																																																																																																																																																																																																																																																																																																					57
TTTCTA	1																																																																																																																																																																																																																																																																																																																																							1
TTTCTC		1																																																																																																																																																																																																																																																																																																																																						1
TTTCTT	8	3	1																																																																																																																																																																																																																																																																																																																																					12
TTTGCT		1																																																																																																																																																																																																																																																																																																																																						1
TTTGTA	1																																																																																																																																																																																																																																																																																																																																							1
TTTGTT	2	2	1																																																																																																																																																																																																																																																																																																																																					5
TTTTAA	2	1																																																																																																																																																																																																																																																																																																																																						3
TTTTAC	2																																																																																																																																																																																																																																																																																																																																							2
TTTTAT	30	4																																																																																																																																																																																																																																																																																																																																						34
TTTTCA	1																																																																																																																																																																																																																																																																																																																																							1
TTTTCC	1																																																																																																																																																																																																																																																																																																																																							1
TTTTCT	12	1																																																																																																																																																																																																																																																																																																																																						13
TTTTGT	1			1																																																																																																																																																																																																																																																																																																																																				2
TTTTTA	62	14	2	2																																																																																																																																																																																																																																																																																																																																				80
TTTTTC	19	8	3	1																																																																																																																																																																																																																																																																																																																																				31
TTTTTG	3	3	1	2																																																																																																																																																																																																																																																																																																																																				9

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	169	170	171	172	173	174	175	176	177	178	179	180	181	182	183	184	185	186	187	188	189	190	191	192	193	194	195	196	197	198	199	200	201	202	203	204	205	206	207	208	209	210	211	212	213	214	215	216	217	218	219	220	221	222	223	224	225	226	227	228	229	230	231	232	233	234	235	236	237	238	239	240	241	242	243	244	245	246	247	248	249	250	251	252	253	254	255	256	257	258	259	260	261	262	263	264	265	266	267	268	269	270	271	272	273	274	275	276	277	278	279	280	281	282	283	284	285	286	287	288	289	290	291	292	293	294	295	296	297	298	299	300	301	302	303	304	305	306	307	308	309	310	311	312	313	314	315	316	317	318	319	320	321	322	323	324	325	326	327	328	329	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1226	981	890	897	751	589	595	502	433	413	306	264	208	167	114	123	123	74	69	83	81	40	64	38	40	33	21	38	35	24	30	32	17	29	17	19	15	18	17	10	33	21	15	11	15	13	16	4	15	11	44	16	8	9	8	8	14	8	9	5	6	4	6	6	7	3	4	11	3	5	6	2	4	6	2	3	3	3	7	3	4	6	6	3	4	3	1	3	2	1	2	4	2	3	3	5	1	5	3	2	1	4	1	2	1	2	4	2		1	3	1			2	1	4		2	1	1	1			1	1	1			1	4				1			1	1			2		2		1					1						1							1																												1															1																																																																																																							1	9922
AC/GT	-	-	-	63	37	27	5	4	2	1			1																																																																																																																																																																																																																																																																																																																											140
AG/CT	-	-	-	10	8	2	2	1	1																																																																																																																																																																																																																																																																																																																															24
AT/AT	-	-	-	6553	4497	3496	3032	2587	2415	2263	1901	1634	1402	1149	889	743	641	497	371	258	176	112	74	52	29	34	16	8	7	4	5	3	1	4	1	2	2		2			3	3	1		3																																																																																																																																																																																																																																																																																										34870
AAC/GTT	-	-	62	31	13	5	3	1	1	1																																																																																																																																																																																																																																																																																																																														117
AAG/CTT	-	-	100	48	19	5	2	4	1			3																																																																																																																																																																																																																																																																																																																												182
AAT/ATT	-	-	2001	1163	830	534	334	195	100	84	45	27	10	13	4	8	3	3	4	1	1	3		2			1			1				1																																																																																																																																																																																																																																																																																																						5368
ACC/GGT	-	-	6	1																																																																																																																																																																																																																																																																																																																																				7
ACG/CGT	-	-	1																																																																																																																																																																																																																																																																																																																																					1
ACT/AGT	-	-	53	24	5	7	1	1	1	2																		1																																																																																																																																																																																																																																																																																																												95
AGC/CTG	-	-	2																																																																																																																																																																																																																																																																																																																																					2
AGG/CCT	-	-	8	2	1																																																																																																																																																																																																																																																																																																																																			11
ATC/ATG	-	-	145	75	16	8	6	1		1	1	1		1																																																																																																																																																																																																																																																																																																																										255
AAAC/GTTT	-	29	2	2	1	1																																																																																																																																																																																																																																																																																																																																		35
AAAG/CTTT	-	19	4	2	2	2	1																																																																																																																																																																																																																																																																																																																																	30
AAAT/ATTT	-	1855	774	354	138	68	39	16	12	11	9	2	2		3		1																																																																																																																																																																																																																																																																																																																							3284
AAGG/CCTT	-	2	1																																																																																																																																																																																																																																																																																																																																					3
AAGT/ACTT	-				1																																																																																																																																																																																																																																																																																																																																			1
AATC/ATTG	-	4																																																																																																																																																																																																																																																																																																																																						4
AATG/ATTC	-	8	2				1	1	1																																																																																																																																																																																																																																																																																																																															13
AATT/AATT	-	21	4		1																																																																																																																																																																																																																																																																																																																																			26
ACAT/ATGT	-	126	44	22	8	2		2												1																																																																																																																																																																																																																																																																																																																				205
AGAT/ATCT	-	1				1																																																																																																																																																																																																																																																																																																																																		2
AGCT/AGCT	-	1																																																																																																																																																																																																																																																																																																																																						1
ATCC/ATGG	-	1																																																																																																																																																																																																																																																																																																																																						1
AAAAC/GTTTT	52	19	5		1			1				1																																																																																																																																																																																																																																																																																																																												79
AAAAG/CTTTT	158	35	8	2		1																																																																																																																																																																																																																																																																																																																																		204
AAAAT/ATTTT	1591	511	191	44	17	3	1	2																																																																																																																																																																																																																																																																																																																																2360
AAACC/GGTTT	2																																																																																																																																																																																																																																																																																																																																							2
AAAGG/CCTTT	1																																																																																																																																																																																																																																																																																																																																							1
AAAGT/ACTTT	1																																																																																																																																																																																																																																																																																																																																							1
AAATC/ATTTG	11	2																																																																																																																																																																																																																																																																																																																																						13
AAATG/ATTTC	23	5	3																																																																																																																																																																																																																																																																																																																																					31
AAATT/AATTT	77	17	6	1																																																																																																																																																																																																																																																																																																																																				101
AACAC/GTGTT	1	2																																																																																																																																																																																																																																																																																																																																						3
AACAT/ATGTT	4																																																																																																																																																																																																																																																																																																																																							4
AAGAG/CTCTT	2																																																																																																																																																																																																																																																																																																																																							2
AAGAT/ATCTT	4																																																																																																																																																																																																																																																																																																																																							4
AATAC/ATTGT	6																																																																																																																																																																																																																																																																																																																																							6
AATAG/ATTCT	3	1																																																																																																																																																																																																																																																																																																																																						4
AATAT/ATATT	899	132	43	15	5	4	4	6	1		3	3		1			1																																																																																																																																																																																																																																																																																																																							1117
AATCT/AGATT	1																																																																																																																																																																																																																																																																																																																																							1
AATGT/ACATT		1																																																																																																																																																																																																																																																																																																																																						1
AATTC/AATTG	1	1																																																																																																																																																																																																																																																																																																																																						2
ATATC/ATATG	8	2	1			1																																																																																																																																																																																																																																																																																																																																		12
AAAAAC/GTTTTT	21	11	4	3																																																																																																																																																																																																																																																																																																																																				39
AAAAAG/CTTTTT	115	24	7	2																																																																																																																																																																																																																																																																																																																																				148
AAAAAT/ATTTTT	406	121	23	10		1																																																																																																																																																																																																																																																																																																																																		561
AAAACT/AGTTTT	2	1																																																																																																																																																																																																																																																																																																																																						3
AAAAGC/CTTTTG	1	1																																																																																																																																																																																																																																																																																																																																						2
AAAAGG/CCTTTT	5			1	1																																																																																																																																																																																																																																																																																																																																			7
AAAAGT/ACTTTT	4	1																																																																																																																																																																																																																																																																																																																																						5
AAAATC/ATTTTG	6	1																																																																																																																																																																																																																																																																																																																																						7
AAAATG/ATTTTC	24	7	4	1		1																																																																																																																																																																																																																																																																																																																																		37
AAAATT/AATTTT	31	3	3																																																																																																																																																																																																																																																																																																																																					37
AAACAC/GTGTTT	2	3		1																																																																																																																																																																																																																																																																																																																																				6
AAACAT/ATGTTT	20	7	2			1																																																																																																																																																																																																																																																																																																																																		30
AAAGAC/CTTTGT	1																																																																																																																																																																																																																																																																																																																																							1
AAAGAG/CTCTTT	4	2																																																																																																																																																																																																																																																																																																																																						6
AAAGAT/ATCTTT	9	1																																																																																																																																																																																																																																																																																																																																						10
AAAGGG/CCCTTT	1																																																																																																																																																																																																																																																																																																																																							1
AAAGTG/ACTTTC	1																																																																																																																																																																																																																																																																																																																																							1
AAATAC/ATTTGT	4	2	1		1																																																																																																																																																																																																																																																																																																																																			8
AAATAG/ATTTCT	3	2																																																																																																																																																																																																																																																																																																																																						5
AAATAT/ATATTT	343	65	18	3	3	2																																																																																																																																																																																																																																																																																																																																		434
AAATCT/AGATTT	1																																																																																																																																																																																																																																																																																																																																							1
AAATGG/ATTTCC	4																																																																																																																																																																																																																																																																																																																																							4
AAATGT/ACATTT	4	1	1																																																																																																																																																																																																																																																																																																																																					6
AAATTG/AATTTC		1																																																																																																																																																																																																																																																																																																																																						1
AAATTT/AAATTT	4																																																																																																																																																																																																																																																																																																																																							4
AACAAG/CTTGTT	2		1																																																																																																																																																																																																																																																																																																																																					3
AACAAT/ATTGTT	12	4																																																																																																																																																																																																																																																																																																																																						16
AACACC/GGTGTT	1																																																																																																																																																																																																																																																																																																																																							1
AACAGC/CTGTTG	2																																																																																																																																																																																																																																																																																																																																							2
AACAGG/CCTGTT	1																																																																																																																																																																																																																																																																																																																																							1
AACATC/ATGTTG	1	1																																																																																																																																																																																																																																																																																																																																						2
AACATG/ATGTTC	1																																																																																																																																																																																																																																																																																																																																							1
AACATT/AATGTT	1	1		1																																																																																																																																																																																																																																																																																																																																				3
AACCAC/GGTTGT	1																																																																																																																																																																																																																																																																																																																																							1
AACGAG/CGTTCT	1																																																																																																																																																																																																																																																																																																																																							1
AACGAT/ATCGTT	1																																																																																																																																																																																																																																																																																																																																							1
AACTAC/AGTTGT	1	1																																																																																																																																																																																																																																																																																																																																						2
AACTAT/AGTTAT		1																																																																																																																																																																																																																																																																																																																																						1
AACTGC/AGTTGC	1																																																																																																																																																																																																																																																																																																																																							1
AAGAAT/ATTCTT	7	2	1																																																																																																																																																																																																																																																																																																																																					10
AAGACG/CGTCTT	1																																																																																																																																																																																																																																																																																																																																							1
AAGAGG/CCTCTT	4																																																																																																																																																																																																																																																																																																																																							4
AAGATC/ATCTTG	1	1																																																																																																																																																																																																																																																																																																																																						2
AAGATG/ATCTTC	9	3	3	1																																																																																																																																																																																																																																																																																																																																				16
AAGGAG/CCTTCT	1																																																																																																																																																																																																																																																																																																																																							1
AAGGAT/ATCCTT	1																																																																																																																																																																																																																																																																																																																																							1
AAGTAG/ACTTCT	1																																																																																																																																																																																																																																																																																																																																							1
AAGTAT/ACTTAT	1																																																																																																																																																																																																																																																																																																																																							1
AAGTGT/ACACTT	1	1																																																																																																																																																																																																																																																																																																																																						2
AATACG/ATTCGT	1																																																																																																																																																																																																																																																																																																																																							1
AATAGT/ACTATT	37	8	1																																																																																																																																																																																																																																																																																																																																					46
AATATC/ATATTG	1																																																																																																																																																																																																																																																																																																																																							1
AATATG/ATATTC	4																																																																																																																																																																																																																																																																																																																																							4
AATATT/AATATT	26	1			1																																																																																																																																																																																																																																																																																																																																			28
AATCAT/ATGATT	4																																																																																																																																																																																																																																																																																																																																							4
AATGAC/ATTGTC	1																																																																																																																																																																																																																																																																																																																																							1
AATGAG/ATTCTC	2																																																																																																																																																																																																																																																																																																																																							2
AATGAT/ATCATT	19	4	1																																																																																																																																																																																																																																																																																																																																					24
AATGGT/ACCATT	1																																																																																																																																																																																																																																																																																																																																							1
AATTAC/AATTGT	5																																																																																																																																																																																																																																																																																																																																							5
AATTAG/AATTCT	2																																																																																																																																																																																																																																																																																																																																							2
AATTAT/AATTAT	21	3																																																																																																																																																																																																																																																																																																																																						24
ACACAG/CTGTGT	1																																																																																																																																																																																																																																																																																																																																							1
ACACAT/ATGTGT	2				1																																																																																																																																																																																																																																																																																																																																			3
ACATAT/ATATGT	47	9	1																																																																																																																																																																																																																																																																																																																																					57
ACATCT/AGATGT	2																																																																																																																																																																																																																																																																																																																																							2
ACATGC/ATGTGC		1																																																																																																																																																																																																																																																																																																																																						1
ACCACT/AGTGGT	2																																																																																																																																																																																																																																																																																																																																							2
ACCATC/ATGGTG	2																																																																																																																																																																																																																																																																																																																																							2
ACGATC/ATCGTG	1																																																																																																																																																																																																																																																																																																																																							1
ACGTCC/ACGTGG	1																																																																																																																																																																																																																																																																																																																																							1
ACTATC/AGTGAT	2																																																																																																																																																																																																																																																																																																																																							2
AGAGAT/ATCTCT	3																																																																																																																																																																																																																																																																																																																																							3
AGATAT/ATATCT	6																																																																																																																																																																																																																																																																																																																																							6
AGATGC/ATCTGC	1																																																																																																																																																																																																																																																																																																																																							1
AGATGG/ATCTCC	1																																																																																																																																																																																																																																																																																																																																							1
ATATCC/ATATGG	1																																																																																																																																																																																																																																																																																																																																							1
