Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-1/megassr/results/hub_GCA_001307345.1/fasta/hub_GCA_001307345.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              239
Total size of examined sequences (bp):           36072589
Total number of identified SSRs:                 5022
Number of SSR containing sequences:              137
Number of sequences containing more than 1 SSR:  87
Number of SSRs present in compound formation:    376


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	590
2	902
3	875
4	591
5	1152
6	912

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	26	27	27	24	16	18	15	14	28	13	10	9	12	12	7	1	5	4	5	2	6		1	1		1			1	1	1		1				1			1					1	291
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1																																											2
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	28	24	20	16	29	14	19	17	20	9	10	10	9	4	5	7	10	12	6	3	6	6	2	1	3	2	1	1			2												1			297
AC	-	-	-	8	3	3	3	2		2	4	1	2	3	1	1	1			1																	1																										36
AG	-	-	-	47	25	20	21	12	8	5	8	8	2	6	2	3	3	2	1	1	1	1	2	3				2																																			183
AT	-	-	-	34	17	7	2	2	2		1	1																																																			66
CA	-	-	-	8	6	4	4	2		1	1				1		2		1							1			1				1			1																											34
CG	-	-	-	4	2																																																										6
CT	-	-	-	34	23	25	7	10	9	7	4	2	4	2	2	2	3	2	1	1	1	2	1																																								142
GA	-	-	-	42	29	10	6	11	9	5	2	6	6	1	3	5			1			1			1	1			2																																		141
GC	-	-	-	2	2	1																																																									5
GT	-	-	-	7	4	1	2	1	1	2					2				1			1																																									22
TA	-	-	-	45	11	11	1	2	1		3																																																				74
TC	-	-	-	48	20	18	14	8	7	6	3	3	5	2	2	5	3	3		4	2											1																															154
TG	-	-	-	12	4	2	2	6	1	5	1	1				1		1						2													1																										39
AAC	-	-	3	1	1	1																																																									6
AAG	-	-	13	8	4	3	1	1				1						1	1			2	1																																								36
AAT	-	-	8	3	5			1						1																																																	18
ACA	-	-	3	3	1	2				1		1																																																			11
ACC	-	-	13	5	1	1			1																																																						21
ACG	-	-	2		2	1																																																									5
ACT	-	-	2		2																																																										4
AGA	-	-	13	7	4	1	1	1		2			1										1																																								31
AGC	-	-	8	4	2	2																																																									16
AGG	-	-	5	7			1																																																								13
AGT	-	-	1	1				1			1																																																				4
ATA	-	-	7	2	1	2	2		1		1																																																				16
ATC	-	-	5	7	1	1	1																																																								15
ATG	-	-	3	3	2	1	1																																																								10
ATT	-	-	5	7	1	1	1							1																																																	16
CAA	-	-	9	4	2	2	3	1		1		1	1																																																		24
CAC	-	-	6	3		1		1																																																							11
CAG	-	-	6	4	4	1	1	1																																																							17
CAT	-	-	4	5	2	2	3	1	3								1																																														21
CCA	-	-	10	2	3		1	2																																																							18
CCG	-	-	5	4																																																											9
CCT	-	-	9	2	1	3		1																																																							16
CGA	-	-	6	1	1																																																										8
CGC	-	-	4																																																												4
CGG	-	-	5	3																																																											8
CGT	-	-	1	1																																																											2
CTA	-	-	1	3																																																											4
CTC	-	-	4	4	3		2	1	1																																																						15
CTG	-	-	8	3	3	3	1	2																																																							20
CTT	-	-	16	1	1	4	1	2	2	1	1		1					1					1	2																																							34
GAA	-	-	14	4	4	6	1	2	1	2					1																																																35
GAC	-	-	4	2	1	1																																																									8
GAG	-	-	7	3	2	2	1	1	1																																																						17
GAT	-	-	9	1	2			1																																																							13
GCA	-	-	9	4	1		1	2																																																							17
GCC	-	-	10	2	1																																																										13
GCG	-	-	4	1	1																																																										6
GCT	-	-	14	5	3	1	1																																																								24
GGA	-	-	7	3	1	1	3		1																																																						16
GGC	-	-	13	1	3	1																																																									18
GGT	-	-	10	4	2	2																																																									18
GTA	-	-	5	1																																																											6
GTC	-	-	4	6	1		1			1																																																					13
GTG	-	-	3	1	1			1																																																							6
GTT	-	-	7	5																																																											12
TAA	-	-	3	2	1	1																																																									7
TAC	-	-	1	3			2																																																								6
TAG	-	-			1			1				1			1									1																																							5
TAT	-	-	7		4				1																																																						12
TCA	-	-	6	3	3		1	1	1										1																																												16
TCC	-	-	7	2	1	3	1																																																								14
TCG	-	-	6		3					2																																																					11
TCT	-	-	15	8	3	1	2	3		1						1			1	1			1	2																																							39
TGA	-	-	7	4	2	3									1							1																																									18
TGC	-	-	8	6	2	2	4	1	1																																																						24
TGG	-	-	6	2	2																																																										10
TGT	-	-	6	2	2	1		2		1																																																					14
TTA	-	-	5	3	4		1	1																																																							14
TTC	-	-	7	2	3	1	1					2										1	1																																								18
TTG	-	-	6		3		1	1						1																																																	12
AAAC	-	2	1	1																																																											4
AAAG	-	9	4				1		2																																																						16
AAAT	-	4																																																													4
AACA	-		2																																																												2
AACC	-	2																																																													2
AAGA	-	10		2													1																																														13
AAGC	-		1																																																												1
AAGG	-	1	1												1																																																3
AATA	-	5	1																																																												6
AATC	-	5	2		1																																																										8
AATG	-	3																																																													3
AATT	-	3	1																																																												4
ACAA	-	2																																																													2
ACAG	-	1								1																																																					2
ACAT	-	6	1																																																												7
ACCA	-	2																																																													2
ACCG	-	1	1																																																												2
ACCT	-	10	2																																																												12
ACTA	-	1																																																													1
ACTC	-		1																																																												1
ACTT	-			1																																																											1
AGAA	-	6	2																																																												8
AGAC	-	5	2	1							1		1																																																		10
AGCA	-	2	1																																																												3
AGCC	-	1	1																																																												2
AGCG	-	1		2																																																											3
AGCT	-	1																																																													1
AGGA	-			2		1																																																									3
AGGC	-	1																																																													1
AGGG	-	3																																																													3
AGGT	-	2	1	1																																																											4
AGTC	-		1																																																												1
ATAC	-	2	2																																																												4
ATAG	-	4	1																																																												5
ATCA	-	7	5	1		1																																																									14
ATCC	-	1		1																																																											2
ATCT	-		1	1			1																																																								3
ATGC	-	1	1																																																												2
ATGG	-	2	2	1																																																											5
ATGT	-	3	3	1								1																																																			8
ATTA	-	1																																																													1
ATTC	-	1	1																																																												2
ATTG	-	2			1										1																																																4
ATTT	-	1																																																													1
CAAA	-	1	1				1																																																								3
CAAC	-		1																																																												1
CAAG	-	2																																																													2
CAAT	-	1	1	1	1																																																										4
CACT	-	1																																																													1
CAGA	-	5	2	1																																																											8
CAGC	-	1	1																																																												2
CAGG	-	2	2																																																												4
CATA	-	1	1																																																												2
CATC	-	3		1																																																											4
CATG	-	1																																																													1
CATT	-	1	2																																																												3
CCAA	-	1																																																													1
CCAT	-	1	1																																																												2
CCCT	-	2																																																													2
CCGA	-		1																																																												1
CCGG	-	1																																																													1
CCTA	-	4	1		1																																																										6
CCTC	-	1																																																													1
CCTG	-		1					1																																																							2
CCTT	-	3	1	1																																																											5
CGAC	-	2																																																													2
CGAT	-	2																																																													2
CGGC	-	1																																																													1
CGTC	-		1																																																												1
CTAC	-	7			1																																																										8
CTAG	-		1																																																												1
CTAT	-	2	1			1																																																									4
CTCA	-		1																																																												1
CTCC	-	2																																																													2
CTCG	-	1																																																													1
CTGA	-	1	1																																																												2
CTGC	-		1	1	1																																																										3
CTGG	-	1																																																													1
CTGT	-	3	1																																																												4
CTTC	-		4																																																												4
CTTG	-					1																																																									1
CTTT	-	5	4		1	2																																																									12
GAAA	-	5	4	1		1											1																																														12
GAAG	-	2																																																													2
GAAT	-	1																																																													1
GACA	-	4																																																													4
GACT	-			1																																																											1
GAGC	-		1																																																												1
GAGG	-	4																																																													4
GAGT	-	1																																																													1
GATA	-	2																																																													2
GATC	-	1																																																													1
GATG	-	4		1			1						1																																																		7
GATT	-	3	3	2	1																																																										9
GCAA	-	1																																																													1
GCAG	-	1																																																													1
GCAT	-	2																																																													2
GCCA	-	2																																																													2
GCCT	-	1	1																																																												2
GCTA	-	1																																																													1
GCTC	-	1																																																													1
GGAA	-	1																																																													1
GGAC	-	1																																																													1
GGAG	-	1	1																																																												2
GGAT	-				2																																																										2
GGCA	-	1			1																																																										2
GGCT	-	1																																																													1
GGGA	-	1																																																													1
GGTA	-	3	2																																																												5
GGTC	-	3																																																													3
GGTT	-	3	1																																																												4
GTAG	-	6	3	2													1																																														12
GTAT	-	1	1																																																												2
GTCA	-					1																																																									1
GTCG	-	1																																																													1
GTCT	-	3					1																																																								4
GTGA	-		1						1																																																						2
GTTC	-	1																																																													1
GTTG	-	2																																																													2
GTTT	-				1																																																										1
TAAC	-	1																																																													1
TACA	-	9	4	1												1																																															15
TACC	-	4	1	1	1	1																																																									8
TACT	-			1																																																											1
TAGA	-	3			1																																																										4
TAGC	-	2	1																																																												3
TAGG	-	5			1	1																																																									7
TAGT	-	2	1																																																												3
TATC	-	2	1		1																																																										4
TATG	-	3		1																																																											4
TATT	-	1																																																													1
TCAA	-	2			1																																																										3
TCAC	-	1																																																													1
TCAG	-	2		1																																																											3
TCAT	-	2	2																																																												4
TCCA	-	2																																																													2
TCCC	-	2																																																													2
TCCG	-		1																																																												1
TCCT	-	3																																																													3
TCGC	-		1																																																												1
TCGG	-	1																																																													1
TCTA	-	2				1																																																									3
TCTG	-	2		2																																																											4
TCTT	-	7	6	2	1																																																										16
TGAC	-	1																																																													1
TGAT	-	5	2		1																																																										8
TGCT	-	3		1																																																											4
TGGA	-	1		1																																																											2
TGGC	-	1	1	1																																																											3
TGGT	-	1	1		1																																																										3
TGTA	-	6	3	2																																																											11
TGTC	-	2																																																													2
TGTT	-		1																																																												1
TTAG	-	1	1																																																												2
TTAT	-	4	1																																																												5
TTCC	-	3	1																																																												4
TTCG	-				1																																																										1
TTCT	-	8	3					1			1		1																																																		14
TTGA	-	7	1	1		1																																																									10
TTGC	-	1						1																																																							2
TTGG	-	2																																																													2
TTGT	-		1																																																												1
TTTA	-	6		2	1																																																										9
TTTC	-	4	5	1	1		1																																																								12
TTTG	-	3		1																																																											4
AAAAC	7																																																														7
AAAAG	36	11	1	1																																																											49
AAAAT	17	7	2	1																																																											27
AAACA	2									1																																																					3
AAACC	3																																																														3
AAACT		1																																																													1
AAAGA	14	2																																																													16
AAAGC	2	1											1																																																		4
AAAGG	6	1	1																																																												8
AAAGT	1																																																														1
AAATA	11	1	1																																																												13
AAATC	5																																																														5
AAATG	2																																																														2
AACAA	3																																																														3
AACAC		1																																																													1
AACAG	1	1																																																													2
AACAT	2																																																														2
AACCC	1																																																														1
AAGAA	13	1											1																																																		15
AAGAC	2																																																														2
AAGAG	3																																																														3
AAGCC	1																																																														1
AAGGA	1	1																																																													2
AAGGG	1		1																																																												2
AAGGT	2																																																														2
AAGTC	1																																																														1
AATAA	2																																																														2
AATAG	1	1																																																													2
AATAT	1																																																														1
AATCA	3																																																														3
AATCC	5	1	1																																																												7
AATGA	1																																																														1
AATGC	1																																																														1
AATTA	5																																																														5
AATTC	1	1																																																													2
ACAAA	1	1																																																													2
ACAAG	1																																																														1
ACACT								1																																																							1
ACAGA	1																																																														1
ACAGG	3																																																														3
ACATC	1																																																														1
ACCAC	2																																																														2
ACCAG	2																																																														2
ACCAT	1																																																														1
ACCCC	1																																																														1
ACCTG	2																																																														2
ACGAA		1																																																													1
ACGAG	1																																																														1
ACGTG	1																																																														1
ACTAA	1																																																														1
ACTCA	1																																																														1
ACTCT	2																																																														2
ACTGA			1																																																												1
AGAAA	12	3	1																																																												16
AGAAG	4																																																														4
AGAAT	1																																																														1
AGACA	1																																																														1
AGACG	2		1																																																												3
AGACT	2																																																														2
AGAGA	4	1																																																													5
AGATA	3																																																														3
AGATC	1																																																														1
AGATG	1	1																																																													2
AGATT	1																																																														1
AGCAA	1																																																														1
AGCAG	1																																																														1
AGCCA	1																																																														1
AGCCC	2																																																														2
AGCGG	1																																																														1
AGCTA	1																																																														1
AGCTC	2																																																														2
AGGAA	1																																																														1
AGGAC	2																																																														2
AGGCA		1																																																													1
AGGGA	4	1	1																																																												6
AGGGC						1																																																									1
AGGGG	4																																																														4
AGGTA	4																																																														4
AGGTT	1																																																														1
AGTAC	1																																																														1
AGTCA	1																																																														1
AGTCC	2																																																														2
AGTTC	1																																																														1
AGTTT	1																																																														1
ATAAA	2																																																														2
ATAGG	1	2																																																													3
ATAGT	1																																																														1
ATATA	2																																																														2
ATATC		1																																																													1
ATATG		1																																																													1
ATATT				1																																																											1
ATCAA	4		1																																																												5
ATCAG	4																																																														4
ATCAT	4	1																																																													5
ATCCA	1																																																														1
ATCCC	1																																																														1
ATCCT	1		1																																																												2
ATCGA	2																																																														2
ATCGC		1																																																													1
ATCTA	1																																																														1
ATCTC	1																																																														1
ATCTG	1																																																														1
ATCTT	1																																																														1
ATGAC	2																																																														2
ATGAT	2																																																														2
ATGCC	2																																																														2
ATGCT	1																																																														1
ATGGA	1																																																														1
ATGGG	2																																																														2
ATGTA	2																																																														2
ATGTC	1																																																														1
ATGTG		1																																																													1
ATGTT	1																																																														1
ATTAA	1																																																														1
ATTAG	2																																																														2
ATTAT	3																																																														3
ATTCA	2																																																														2
ATTCC	2																																																														2
ATTCG	1																																																														1
ATTGA	1	1																																																													2
ATTTA	1																																																														1
ATTTC	1	1																																																													2
ATTTG	1																																																														1
ATTTT	6		1																																																												7
CAAAA	2																																																														2
CAAAC	2	1																																																													3
CAAAG	1																																																														1
CAAAT	1																																																														1
CAACT	1																																																														1
CAAGA	1																																																														1
CAAGG	1																																																														1
CAAGT	1																																																														1
CAATA	1																																																														1
CAATC	2																																																														2
CAATG	3	1																																																													4
CACAT	1																																																														1
CACCA	2																																																														2
CACCC	1																																																														1
CACCT							1																																																								1
CACGA	1			1																																																											2
CACTA	1				1																																																										2
CACTC	1																																																														1
CACTG	1																																																														1
CAGAC	2	2																																																													4
CAGAT	2																																																														2
CAGCA	1																																																														1
CAGCT	1																																																														1
CAGGA	1																																																														1
CAGGT	1		1																																																												2
CAGTA	1																																																														1
CAGTC	3																																																														3
CAGTG	1																																																														1
CATAG					1																																																										1
CATAT	1			1																																																											2
CATCA	1																																																														1
CATCC		1																																																													1
CATCG	2																																																														2
CATCT		1																																																													1
CATGA	1			1																																																											2
CATGC	3																																																														3
CATGG	2	1																																																													3
CATGT	1	1																																																													2
CATTC	1																																																														1
CCAAC	3																																																														3
CCAAG	1																																																														1
CCAGC	1																																																														1
CCAGT	3																																																														3
CCATC	5	1																																																													6
CCCAA	1																																																														1
CCCAC	1																																																														1
CCCAG	1																																																														1
CCCAT	1																																																														1
CCCCG	1																																																														1
CCCCT	1																																																														1
CCCGA	1																																																														1
CCCGG	1																																																														1
CCCGT	1																																																														1
CCCTC	2																																																														2
CCCTT		1		1																																																											2
CCGAC		1																																																													1
CCGAT	1																																																														1
CCGTA	2																																																														2
CCGTC	1																																																														1
CCGTT	1																																																														1
CCTAC	1																																																														1
CCTAT	1																																																														1
CCTCC	2																																																														2
CCTCT	3	1																																																													4
CCTGA	1																																																														1
CCTGG	1																																																														1
CCTTC	3	1																																																													4
CCTTG	1		1																																																												2
CCTTT	2		1	1																																																											4
CGAAA	1																																																														1
CGACT	1																																																														1
CGAGT	1																																																														1
CGATC	2																																																														2
CGATT	1																																																														1
CGCAT	1																																																														1
CGCCA	2																																																														2
CGCCT	1																																																														1
CGGAC	1																																																														1
CGGCA	1																																																														1
CGGCG	1																																																														1
CGTCT	2																																																														2
CGTGT	1																																																														1
CGTTG	1																																																														1
CTAGA	1																																																														1
CTATT	1																																																														1
CTCCC	6																																																														6
CTCCT	2																																																														2
CTCGA	2																																																														2
CTCGT		1																																																													1
CTCTC	3	1	2																																																												6
CTCTT	3	2																																																													5
CTGAA	1																																																														1
CTGAC	1																																																														1
CTGAG			1																																																												1
CTGAT	2																																																														2
CTGCG	1																																																														1
CTGCT	1																																																														1
CTGGG	1																																																														1
CTGGT	2	1																																																													3
CTGTC	1																																																														1
CTGTG	1																																																														1
CTGTT	2																																																														2
CTTAT			1																																																												1
CTTCA	1																																																														1
CTTCC	2	2																																																													4
CTTCT	1																																																														1
CTTGT	2																																																														2
CTTTC	2		1	1																																																											4
CTTTG		1																																																													1
CTTTT	15	5		1																																																											21
GAAAA	15	5	1				1																																																								22
GAAAC	2																																																														2
GAAAG	1								1																																																						2
GAAAT	1	1																																																													2
GAAGA	4		1								1																																																				6
GAAGG	2																																																														2
GAAGT		1																																																													1
GAATG	2																																																														2
GAATT	1																																																														1
GACAA	1	1																																																													2
GACAG	3																																																														3
GACAT	1																																																														1
GACCA				1																																																											1
GACCT	1																																																														1
GACGG	1																																																														1
GACTA	1			1																																																											2
GACTG	2																																																														2
GAGAA	3																																																														3
GAGAC	4			1																																																											5
GAGAG	4	3																																																													7
GAGAT	3			1																																																											4
GAGCG	1																																																														1
GAGCT	1																																																														1
GAGGA	2	1		1																																																											4
GAGGG	1	1																																																													2
GAGGT	2																																																														2
GAGTC			1																																																												1
GATAG	1																																																														1
GATAT	2																																																														2
GATCA	1	1																																																													2
GATCG	1																																																														1
GATCT	1																																																														1
GATGA	5	1																																																													6
GATGC	1	1																																																													2
GATTT	4	1																																																													5
GCAAC	1	1																																																													2
GCAAG	1																																																														1
GCAAT	2																																																														2
GCATC	1																																																														1
GCCAA		1																																																													1
GCCAT	1																																																														1
GCCCA	1																																																														1
GCCCC	1																																																														1
GCCGT	1																																																														1
GCCTC	1																																																														1
GCCTT	1																																																														1
GCGAG	2																																																														2
GCGCT	1																																																														1
GCGTC	1																																																														1
GCGTG			1																																																												1
GCTGT	1																																																														1
GCTTG	1																																																														1
GGAAA	2	1																																																													3
GGAAG	2	2																																																													4
GGAAT	2																																																														2
GGACA	1																																																														1
GGACG	1		1																																																												2
GGACT	2																																																														2
GGAGA	2		1																																																												3
GGAGG	4																																																														4
GGATA			1																																																												1
GGATC	1																																																														1
GGATG	4																																																														4
GGATT	2	1																																																													3
GGCAG	2																																																														2
GGCAT		1																																																													1
GGCTG	2																																																														2
GGCTT	1																																																														1
GGGAA	1																																																														1
GGGAG	3	1																																																													4
GGGAT	2																																																														2
GGGCT	1																																																														1
GGGGA	1	1																																																													2
GGGTA	1																																																														1
GGGTC	1																																																														1
GGGTT	1																																																														1
GGTAC	1																																																														1
GGTAG	1																																																														1
GGTCT	2	2																																																													4
GGTGA	1																																																														1
GGTGG	1																																																														1
GGTGT	1																																																														1
GGTTA		1																																																													1
GGTTG	1																																																														1
GGTTT		1																																																													1
GTAAG	1																																																														1
GTACA	1																																																														1
GTACC	1																																																														1
GTACG	1																																																														1
GTAGA	1																																																														1
GTAGT	1																																																														1
GTATT	1																																																														1
GTCAG	1																																																														1
GTCAT	1	1																																																													2
GTCTA		1																																																													1
GTCTG	3																																																														3
GTCTT						1																																																									1
GTGAC	1																																																														1
GTGGT	1																																																														1
GTGTC	1																																																														1
GTGTT	4																																																														4
GTTAG	1																																																														1
GTTCA	2																																																														2
GTTCC	1																																																														1
GTTGA		1	1																																																												2
GTTGG	2	1																																																													3
GTTTA	1																																																														1
GTTTG			1																																																												1
TAAAC		1																																																													1
TAAAT	1																																																														1
TAACA	1																																																														1
TAATA	3																																																														3
TAATC	1																																																														1
TAATT	3																																																														3
TACAC	1																																																														1
TACCA	1																																																														1
TACCG	2																																																														2
TACCT	1																																																														1
TACGG	2																																																														2
TACTT	1																																																														1
TAGGG	1																																																														1
TAGGT	1																																																														1
TAGTT	1																																																														1
TATAT	3																																																														3
TATCA	2																																																														2
TATCC	1																																																														1
TATCG	1																																																														1
TATGA	3	1																																																													4
TATGC	1																																																														1
TATGT	1																																																														1
TATTA	2	2																																																													4
TATTC	2																																																														2
TATTT	8																																																														8
TCAAA	2																																																														2
TCAAT		1																																																													1
TCAGC	3	1																																																													4
TCATA	2	1																																																													3
TCATG	1																																																														1
TCCAG	2																																																														2
TCCAT	1																																																														1
TCCCA		1																																																													1
TCCCC	2																																																														2
TCCCG	1																																																														1
TCCCT	1																																																														1
TCCTC	3	1																																																													4
TCCTT	1	1																																																													2
TCGAA	1																																																														1
TCGAG		1																																																													1
TCGCA		1																																																													1
TCGGC	1	1																																																													2
TCGGT	1																																																														1
TCGTC	1																																																														1
TCTAG	3																																																														3
TCTCA	1		1																																																												2
TCTCC	1																																																														1
TCTCG	2																																																														2
TCTCT	3																																																														3
TCTGA	1																																																														1
TCTGC	1																																																														1
TCTTC	4																																																														4
TCTTG	3																																																														3
TCTTT	11	2		1																																																											14
TGACA			1																																																												1
TGACG	1																																																														1
TGACT		1																																																													1
TGAGA	1																																																														1
TGAGC	1																																																														1
TGATA	4																																																														4
TGATT	3	1	1																																																												5
TGCAG			1																																																												1
TGCAT	3																																																														3
TGCCC	1																																																														1
TGCCT		1																																																													1
TGCGA	1	1																																																													2
TGCGG		1																																																													1
TGCTA	1																																																														1
TGCTC	2																																																														2
TGCTT	1																																																														1
TGGAA	1																																																														1
TGGAG	1																																																														1
TGGAT	2																																																														2
TGGCC	2																																																														2
TGGCG	1																																																														1
TGGGA	2	1			1																																																										4
TGGGC		1																																																													1
TGGTA	1																																																														1
TGGTT	5	1																																																													6
TGTAC	2																																																														2
TGTAT	1																																																														1
TGTCA	1																																																														1
TGTCC				1																																																											1
TGTCG		1																																																													1
TGTCT			1																																																												1
TGTGA	1																																																														1
TGTGC	1	1																																																													2
TGTGG	2																																																														2
TGTTA	2																																																														2
TGTTC	3												1																																																		4
TGTTT	4																																																														4
TTAAT	1																																																														1
TTAGG				1																																																											1
TTATA	1																																																														1
TTATC	1																																																														1
TTATT	6	1	1																																																												8
TTCAG	1																																																														1
TTCAT	1																																																														1
TTCCA	1																																																														1
TTCCC	3																																																														3
TTCCT	1	1																																																													2
TTCTA		1																																																													1
TTCTC	5																																																														5
TTCTG		1																																																													1
TTCTT	14	2	1																																																												17
TTGAC		2																																																													2
TTGAT	5	1																																																													6
TTGCA	3	1																																																													4
TTGCT	3																																																														3
TTGGA	2			1																																																											3
TTGGC	1																																																														1
TTGGG	2	1																																																													3
TTGGT	1	1																																																													2
TTGTA		1																																																													1
TTGTC	1																																																														1
TTGTT	2																																																														2
TTTAA	3																																																														3
TTTAT	9	1																																																													10
TTTCA	1																																																														1
TTTCC	2																																																														2
TTTCG	1																																																														1
TTTCT	8	1																																																													9
TTTGA	2	2																																																													4
TTTGG	4																																																														4
TTTGT	1	1																																																													2
TTTTA	9	2																																																													11
TTTTC	35	10	3																																																												48
TTTTG	3	1																																																													4
AAAAAG	6	1																																																													7
AAAAAT	4																																																														4
AAAACA	1																																																														1
AAAACC	1																																																														1
AAAAGA	4	3																																																													7
AAAAGG		1																																																													1
AAAATA	1	2																																																													3
AAACGG	1																																																														1
AAAGAA	5																																																														5
AAAGAC	1																																																														1
AAAGAG	1																																																														1
AAAGCA	1																																																														1
AAAGGA	1																																																														1
AAATAA	2																																																														2
AAATAG	1																																																														1
AAATAT	1																																																														1
AAATGA	1	1																																																													2
AAATGG	1																																																														1
AACAAA	1																																																														1
AACACC			1																																																												1
AACAGC	1																																																														1
AACCCA			1																																																												1
AACCCG	2																																																														2
AACGAG	1																																																														1
AACGGA	1																																																														1
AACTGA	1																																																														1
AAGAAA	3	1																																																													4
AAGACG	2																																																														2
AAGACT	1																																																														1
AAGAGA	1																																																														1
AAGAGG	1	1																																																													2
AAGCCC	1																																																														1
AAGGAA		1																																																													1
AAGGAT	1																																																														1
AAGGCT	1																																																														1
AAGGGC	1																																																														1
AAGTCG	1																																																														1
AAGTGG			1																																																												1
AATAAA	3																																																														3
AATAAC	1																																																														1
AATAAG		1																																																													1
AATCCC	1																																																														1
AATCTG		1																																																													1
AATGGC	1																																																														1
ACACAT	1																																																														1
ACACCC	1																																																														1
ACAGCA		1																																																													1
ACAGCT		1																																																													1
ACAGGA	1																																																														1
ACATGA	1																																																														1
ACATGG	1																																																														1
ACCAAC	1																																																														1
ACCACT	1																																																														1
ACCAGC	1																																																														1
ACCCGA	1																																																														1
ACCGCC	1																																																														1
ACCGTG	1																																																														1
ACCTCC	3																																																														3
ACGAGA	2																																																														2
ACGATC	2																																																														2
ACGCCC	1																																																														1
ACGGCG	1																																																														1
ACTAGT	1																																																														1
ACTCTG	1																																																														1
ACTGCG	1																																																														1
ACTTCA		1																																																													1
ACTTCC	1																																																														1
ACTTCT	1																																																														1
ACTTGA	1																																																														1
AGAAAA	2																																																														2
AGAAAC	1																																																														1
AGAAAG	1	1																																																													2
AGAAGC	1																																																														1
AGAATT	1																																																														1
AGACGC	1																																																														1
AGAGAC	1																																																														1
AGAGGA	2																																																														2
AGAGGC	1																																																														1
AGAGGG		2																																																													2
AGATCA	1																																																														1
AGATGC	1																																																														1
AGATGG		1																																																													1
AGATTT	1																																																														1
AGCAAC	1	1																																																													2
AGCACC		1																																																													1
AGCAGA	1																																																														1
AGCCAG		1																																																													1
AGCCCA	1																																																														1
AGCCCT	1																																																														1
AGCGAA	1																																																														1
AGCGGC	1																																																														1
AGGAAA	2																																																														2
AGGAAG	5																																																														5
AGGAGC	1																																																														1
AGGCAC		1																																																													1
AGGCGC	1																																																														1
AGGCTC	1																																																														1
AGGGAG	1																																																														1
AGGGAT	1																																																														1
AGGGCA	1																																																														1
AGGGGA	1																																																														1
AGGGGG	1																																																														1
AGGTGC	1																																																														1
AGGTGG	1																																																														1
AGTATG	1																																																														1
AGTCCA	1			1																																																											2
AGTGAC	1																																																														1
AGTTGA	1																																																														1
ATAAAA	1																																																														1
ATAAGT	1																																																														1
ATACTA	1																																																														1
ATAGAA	1																																																														1
ATAGGA	1																																																														1
ATATTA	1																																																														1
ATCACC	1																																																														1
ATCCAC	1																																																														1
ATCCTC	1																																																														1
ATCGAA	1																																																														1
ATCGGA	1																																																														1
ATCGTC	1																																																														1
ATCTAC	1																																																														1
ATCTCC	2																																																														2
ATCTGG	1																																																														1
ATGAAG	2																																																														2
ATGAAT	1																																																														1
ATGAGC		1		1																																																											2
ATGATA		1																																																													1
ATGCCG	1																																																														1
ATGGAT	1																																																														1
ATGGCT	2																																																														2
ATGTAC	1																																																														1
ATGTCA	1																																																														1
ATGTCG	1																																																														1
ATTTTT	3																																																														3
CAAAAC		1																																																													1
CAAACC		1	1																																																												2
CAAAGC	1																																																														1
CAAAGG	1																																																														1
CAAATG		1																																																													1
CAACAC	1																																																														1
CAACAG	1	2																																																													3
CAACAT	1																																																														1
CAACCT	1																																																														1
CAACTT	1																																																														1
CAAGCC	2																																																														2
CAAGGT	1																																																														1
CAATAG	1																																																														1
CAATAT	1																																																														1
CAATCG		1																																																													1
CAATGG	1																																																														1
CACAAC	1																																																														1
CACCAA	1	1																																																													2
CACCGA		1																																																													1
CACCGG	1																																																														1
CACCGT		1																																																													1
CACCTT	1																																																														1
CACGAA	1																																																														1
CACGCT	1																																																														1
CAGACA	1																																																														1
CAGAGC	1																																																														1
CAGATC	1																																																														1
CAGCAA	3	1																																																													4
CAGCAC	1																																																														1
CAGCAT	1	1																																																													2
CAGCCA	1																																																														1
CAGCCC	1																																																														1
CAGCCT	1																																																														1
CAGCGA	2	1																																																													3
CAGCGG	2																																																														2
CAGCTC	2																																																														2
CAGGCA	1																																																														1
CAGGGA	2																																																														2
CAGTGA	1																																																														1
CAGTGC	1																																																														1
CAGTTC	1																																																														1
CATAAA				1																																																											1
CATCAC		1																																																													1
CATCCC	1																																																														1
CATCCT		1																																																													1
CATCGG	1																																																														1
CATCTA		1																																																													1
CATCTC	2																																																														2
CATGAA	1																																																														1
CATGAG	2																																																														2
CATGAT	1																																																														1
CATGGA	1																																																														1
CATGTT	1																																																														1
CATTTC	1																																																														1
CCAACA	1																																																														1
CCAAGT		1																																																													1
CCAATT	1																																																														1
CCACGG	1																																																														1
CCAGAG	1	1																																																													2
CCAGCA	1																																																														1
CCAGCT		1																																																													1
CCAGGT	1																																																														1
CCATAT	1																																																														1
CCATCA	1																																																														1
CCATGT	2																																																														2
CCATTT	1	1																																																													2
CCCAAG	2																																																														2
CCCCAG	1																																																														1
CCCCCT	2																																																														2
CCCCTC	1																																																														1
CCCCTT	2																																																														2
CCCGAG	1																																																														1
CCCGCT	2																																																														2
CCCTAT		1																																																													1
CCCTCA	1																																																														1
CCCTGG	1																																																														1
CCCTTC	1																																																														1
CCGAAA		1																																																													1
CCGACA	1																																																														1
CCGAGC	1																																																														1
CCGCTC	1																																																														1
CCGGAG		1																																																													1
CCGGGT	1																																																														1
CCGGTG		1																																																													1
CCGTCC	1																																																														1
CCGTCG	1																																																														1
CCGTGG	1																																																														1
CCTAGT	2																																																														2
CCTCAA	1																																																														1
CCTCCC	2																																																														2
CCTCCG	1																																																														1
CCTCGA		1																																																													1
CCTCGC	1																																																														1
CCTCTC	2		2																																																												4
CCTCTT	2																																																														2
CCTGCT	2																																																														2
CCTGGC	1																																																														1
CCTGGG	1																																																														1
CCTTCT		1																																																													1
CCTTGA	1																																																														1
CCTTGC	2																																																														2
CCTTTC	1																																																														1
CGACAT		1																																																													1
CGACCG	2																																																														2
CGACCT		1																																																													1
CGACGG	1																																																														1
CGACTA	1																																																														1
CGACTG	1																																																														1
CGACTT	1																																																														1
CGAGAC	1																																																														1
CGAGGA			1																																																												1
CGAGGC	1																																																														1
CGAGGT	2																																																														2
CGAGTC	1																																																														1
CGATCC	1																																																														1
CGATCG	1																																																														1
CGATGC	1																																																														1
CGCAGC	1																																																														1
CGCAGG		1																																																													1
CGCAGT	1																																																														1
CGCCCG	1																																																														1
CGCCGA	2																																																														2
CGCGGC	1																																																														1
CGGAGC	1																																																														1
CGGCAA	1																																																														1
CGGCAT		1																																																													1
CGGCGC	1																																																														1
CGGCTC	1																																																														1
CGGGCT	1																																																														1
CGGGGA	1																																																														1
CGGTCA	1																																																														1
CGGTGA	1																																																														1
CGGTGT	1																																																														1
CGTAGA							1																																																								1
CGTCAA	1																																																														1
CGTCCG	1																																																														1
CGTCTG	1																																																														1
CTACTG	1																																																														1
CTACTT	1																																																														1
CTAGGT	1																																																														1
CTCACC	1																																																														1
CTCAGC		1																																																													1
CTCATC	1																																																														1
CTCCCT			1																																																												1
CTCCGT	1																																																														1
CTCCTG	1																																																														1
CTCCTT	2																																																														2
CTCGCA	1																																																														1
CTCGGG	2																																																														2
CTCGTC	1																																																														1
CTCTCC	3																																																														3
CTCTCG	1																																																														1
CTCTTC	2																																																														2
CTCTTT	2																																																														2
CTGAAA		1																																																													1
CTGACA	1																																																														1
CTGAGT	1																																																														1
CTGATG	1																																																														1
CTGATT	1																																																														1
CTGCGG	1																																																														1
CTGGAC	1																																																														1
CTGGAG	1																																																														1
CTGGTT	1																																																														1
CTGTAT	1																																																														1
CTGTCC		1																																																													1
CTGTGC	1																																																														1
CTTCAC	1																																																														1
CTTCCT	3	1																																																													4
CTTCGC	2																																																														2
CTTCGG	1																																																														1
CTTCTA	1																																																														1
CTTCTC	2																																																														2
CTTGTT	1																																																														1
CTTTCT	1																																																														1
CTTTTT	3	1																																																													4
GAAAAA	2	1	1																																																												4
GAAAAC	1																																																														1
GAAAAG		1																																																													1
GAAACA	1																																																														1
GAAACC	1																																																														1
GAAAGA	1																																																														1
GAACAT	1																																																														1
GAACCA	2																																																														2
GAACCC	1																																																														1
GAACCG	1																																																														1
GAACTA	1																																																														1
GAAGAG	9	1																																																													10
GAAGCC	1																																																														1
GAAGGG	1																																																														1
GAAGTC	1																																																														1
GAAGTT	1																																																														1
GAATCC	1																																																														1
GAATCT	1																																																														1
GAATGT	1																																																														1
GACAAC	1																																																														1
GACACC		1																																																													1
GACACT	1																																																														1
GACAGA	1																																																														1
GACAGC	1																																																														1
GACAGG		1																																																													1
GACCAG		1																																																													1
GACCAT	2																																																														2
GACGAA	1																																																														1
GACGAG	2																																																														2
GACGAT	1																																																														1
GACGCC		1																																																													1
GACTCG	1																																																														1
GAGAAG	1																																																														1
GAGACC	1																																																														1
GAGAGG	4	1																																																													5
GAGATG	2																																																														2
GAGATT	1																																																														1
GAGCAG	1																																																														1
GAGCCC		1																																																													1
GAGCCT	1																																																														1
GAGCGC	1																																																														1
GAGGAA	3																																																														3
GAGGGA	2																																																														2
GAGGGG	1																																																														1
GAGGTG	1																																																														1
GAGTAT	1																																																														1
GAGTCA		2																																																													2
GAGTCG	3																																																														3
GAGTTG	1																																																														1
GATATA		1																																																													1
GATATG	1																																																														1
GATCCA	1																																																														1
GATCCT	1																																																														1
GATCTT	1																																																														1
GATGAA	2																																																														2
GATGAC	2																																																														2
GATGAG	2																																																														2
GATGCA	1																																																														1
GATGCC	1																																																														1
GATGGA	1		1																																																												2
GATGGC	4																																																														4
GATGGG	1																																																														1
GATGGT	1																																																														1
GATGTT	1																																																														1
GATTAG	1																																																														1
GATTCG		1																																																													1
GATTCT	1																																																														1
GCAAGA	1																																																														1
GCAAGG	1																																																														1
GCACCA	2																																																														2
GCAGCG	1																																																														1
GCAGGA				1																																																											1
GCAGTA		1																																																													1
GCATCG	1																																																														1
GCATCT	2																																																														2
GCCAAC	1																																																														1
GCCACG	2																																																														2
GCCCAC	1																																																														1
GCCCCT		1																																																													1
GCCGAT		1																																																													1
GCCGCG	1																																																														1
GCCGCT	2																																																														2
GCCGTA		1																																																													1
GCCTCT	1																																																														1
GCCTGA		1																																																													1
GCCTGC	2																																																														2
GCCTTC	1																																																														1
GCCTTT	1																																																														1
GCGAAG	1																																																														1
GCGACA	1																																																														1
GCGAGT	1																																																														1
GCGCGA	1																																																														1
GCGGGC	1																																																														1
GCGTCG	1																																																														1
GCGTTT	1																																																														1
GCTAGA	1																																																														1
GCTATG		1																																																													1
GCTCAT	3																																																														3
GCTCCA	1																																																														1
GCTCCC	1																																																														1
GCTCCG	1																																																														1
GCTCCT	1																																																														1
GCTCTC	1																																																														1
GCTCTG	1																																																														1
GCTGCA	1																																																														1
GCTGCC	1																																																														1
GCTGTT	1	1																																																													2
GCTTCC	1																																																														1
GGAAAA	1																																																														1
GGAAAC	1																																																														1
GGAAAG	1																																																														1
GGAAGA	3																																																														3
GGAATG	1																																																														1
GGACAC	1																																																														1
GGACAG	1																																																														1
GGACCC	1																																																														1
GGACCT	1																																																														1
GGACGA	2																																																														2
GGACTC	1																																																														1
GGACTT	1																																																														1
GGAGAG		1																																																													1
GGAGCA	1																																																														1
GGAGCC	1																																																														1
GGATTG	1																																																														1
GGCAAG	1																																																														1
GGCACC	1																																																														1
GGCAGC	1																																																														1
GGCGCG	1																																																														1
GGCGGA	1																																																														1
GGCTCA	1																																																														1
GGCTCC	2																																																														2
GGCTCT	2																																																														2
GGCTGA	1																																																														1
GGCTGC	1																																																														1
GGGAGA	1																																																														1
GGGATG	1																																																														1
GGGCAA	1																																																														1
GGGCTC	1																																																														1
GGGCTG	1																																																														1
GGGGAA	1	1																																																													2
GGGGAG	1																																																														1
GGGGGA	2																																																														2
GGGGTT	1																																																														1
GGTACA	1																																																														1
GGTATA	1																																																														1
GGTCGT			1																																																												1
GGTCTT	1																																																														1
GGTGCC	1																																																														1
GGTGCT	1																																																														1
GGTGTT	2																																																														2
GGTTCT	1																																																														1
GGTTGA			1																																																												1
GGTTGC	1																																																														1
GGTTGG	1																																																														1
GGTTTG	1	1																																																													2
GGTTTT	2																																																														2
GTACCT		1																																																													1
GTAGAA	1																																																														1
GTAGAT		1																																																													1
GTAGGA	1																																																														1
GTAGGC		1																																																													1
GTCACC	1																																																														1
GTCCAA	1																																																														1
GTCCCC		1																																																													1
GTCCCT	1																																																														1
GTCGCA	1																																																														1
GTCGCT	1																																																														1
GTCTAG	1																																																														1
GTCTGA	1																																																														1
GTCTTC	1																																																														1
GTGATT	1																																																														1
GTGCGT	1																																																														1
GTGCTA	1																																																														1
GTGCTG	1																																																														1
GTGGCA	1																																																														1
GTGTCA	1																																																														1
GTTACT		1																																																													1
GTTCAT	1	1																																																													2
GTTCCA	1																																																														1
GTTGTA	1																																																														1
GTTGTC	1																																																														1
GTTTGC	1																																																														1
TAAAAG	1																																																														1
TAAAGG	1																																																														1
TACAAT	1																																																														1
TACATT	1																																																														1
TACCCA		1																																																													1
TACTTG		1																																																													1
TAGAAG			1																																																												1
TAGCGA	1																																																														1
TAGGGC	1																																																														1
TAGTGA	1																																																														1
TATAAC	1																																																														1
TATATC	1																																																														1
TATGAT	1																																																														1
TATGGG	1																																																														1
TATGTC	1																																																														1
TATTTA	1																																																														1
TATTTT	1																																																														1
TCAAAA	1																																																														1
TCAAAG		1																																																													1
TCACGA	1																																																														1
TCACTC		1																																																													1
TCAGCC	1																																																														1
TCAGGG		1																																																													1
TCAGGT	1																																																														1
TCATCC	5																																																														5
TCATCG	1																																																														1
TCATCT	2																																																														2
TCATTT		1																																																													1
TCCAAA	2																																																														2
TCCACT		1																																																													1
TCCAGG		1																																																													1
TCCATG		1																																																													1
TCCATT	1																																																														1
TCCCCG	1																																																														1
TCCCCT	1				1																																																										2
TCCCGT	1																																																														1
TCCGAA	1																																																														1
TCCGAC	1																																																														1
TCCGGC	1																																																														1
TCCGGT	1																																																														1
TCCTCA	4																																																														4
TCCTCG	1																																																														1
TCCTCT	1																																																														1
TCCTGG	1																																																														1
TCCTTC	4																																																														4
TCCTTG	1																																																														1
TCCTTT	1	1																																																													2
TCGCCA	3																																																														3
TCGCCG	1																																																														1
TCGCGA	1																																																														1
TCGCGT	1																																																														1
TCGGGA	1																																																														1
TCGGGT	2	1																																																													3
TCGTCC	2																																																														2
TCGTGC	1																																																														1
TCTACT	1	1																																																													2
TCTAGC	1																																																														1
TCTATA		1																																																													1
TCTATC	1																																																														1
TCTATT		1																																																													1
TCTCCC	2																																																														2
TCTCTT	1	1	1	1																																																											4
TCTGAT	1																																																														1
TCTGCC	1																																																														1
TCTGGC	2																																																														2
TCTGTC	1																																																														1
TCTTAC	1																																																														1
TCTTAT		1	1																																																												2
TCTTCA		1																																																													1
TCTTCC	6																																																														6
TCTTCG				1																																																											1
TCTTGC	1																																																														1
TCTTGG	1																																																														1
TCTTTC		1																																																													1
TCTTTT	5	1																																																													6
TGAAGA	2																																																														2
TGACAT	1																																																														1
TGACCG	1																																																														1
TGAGCC		1																																																													1
TGAGCT	1																																																														1
TGATCA	1																																																														1
TGCAGG	2																																																														2
TGCATC	3																																																														3
TGCCAA	1																																																														1
TGCCAT	1																																																														1
TGCCGG	2																																																														2
TGCGAT	1																																																														1
TGCGCC	1																																																														1
TGCGGA	1																																																														1
TGCTAC	1																																																														1
TGCTGA			1																																																												1
TGCTGT	2	1																																																													3
TGGAAA	1																																																														1
TGGACC	1																																																														1
TGGAGA	1			1																																																											2
TGGATA		1																																																													1
TGGATG		1																																																													1
TGGCAG	1																																																														1
TGGCGG	1																																																														1
TGGGAC	1																																																														1
TGGGAG	1																																																														1
TGGGCA		1																																																													1
TGGGCC	1																																																														1
TGGGGA	1																																																														1
TGGTCC		1																																																													1
TGGTGA	1	1																																																													2
TGGTGT	1																																																														1
TGGTTA			1																																																												1
TGGTTG	1																																																														1
TGTATC	2																																																														2
TGTCAA	1																																																														1
TGTCAG	1		1																																																												2
TGTCGG	1																																																														1
TGTCGT	1																																																														1
TGTCTA	1																																																														1
TGTCTG	1																																																														1
TGTGAT	1																																																														1
TGTGCA	1																																																														1
TGTGTA	1																																																														1
TGTTCA	1																																																														1
TGTTCC		1																																																													1
TGTTGA		1																																																													1
TGTTGC	1		1																																																												2
TGTTTG	1																																																														1
TTAATA	1																																																														1
TTACCT		1																																																													1
TTACGA		1																																																													1
TTATCA	1																																																														1
TTATGG	1																																																														1
TTATTT	5																																																														5
TTCATC	2																																																														2
TTCCCA	1																																																														1
TTCCCC	2																																																														2
TTCCTC	1																																																														1
TTCGAC	1																																																														1
TTCGCT	1																																																														1
TTCGTC	1																																																														1
TTCTAT	1																																																														1
TTCTCC	1																																																														1
TTCTCT		1																																																													1
TTCTTA	1																																																														1
TTCTTT	5	3																																																													8
TTGCAT	1																																																														1
TTGCCC	1																																																														1
TTGGAT	1																																																														1
TTGGGT	1																																																														1
TTGTGA	1																																																														1
TTGTGC		1																																																													1
TTGTGG	1																																																														1
TTGTTA	1																																																														1
TTTATT	2	1			1																																																										4
TTTCAA	1																																																														1
TTTCCT	1																																																														1
TTTCTC	2																																																														2
TTTCTT	5	2			1																																																										8
TTTGCA	1																																																														1
TTTTAT	3	1																																																													4
TTTTCA	2			1																																																											3
TTTTCC	1																																																														1
TTTTCT	6																																																														6
TTTTTA	6	1																																																													7
TTTTTC	19	1																																																													20

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	54	51	47	40	45	32	34	31	48	22	20	19	21	16	12	8	15	16	11	5	12	6	3	2	3	3	1	1	1	1	3		1				1			1			1		1	588
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1																																											2
AC/GT	-	-	-	35	17	10	11	11	2	10	6	2	2	3	4	2	3	1	2	1		1		2		1			1				1			1	2																										131
AG/CT	-	-	-	171	97	73	48	41	33	23	17	19	17	11	9	15	9	7	3	6	4	4	3	3	1	1		2	2			1																															620
AT/AT	-	-	-	79	28	18	3	4	3		4	1																																																			140
CG/CG	-	-	-	6	4	1																																																									11
AAC/GTT	-	-	34	15	9	6	4	4		3		2	1	1																																																	79
AAG/CTT	-	-	78	30	19	16	7	9	3	6	1	3	2		1	1		2	2	1		3	5	4																																							193
AAT/ATT	-	-	35	17	16	4	4	2	2		1			2																																																	83
ACC/GGT	-	-	48	17	9	4	1	4	1																																																						84
ACG/CGT	-	-	23	10	8	2	1			3																																																					47
ACT/AGT	-	-	10	8	3		2	2			1	1			1									1																																							29
AGC/CTG	-	-	53	26	15	9	8	6	1																																																						118
AGG/CCT	-	-	39	21	8	9	8	3	3																																																						91
ATC/ATG	-	-	34	23	12	7	6	3	4						1		1		1			1																																									93
CCG/CGG	-	-	41	11	5	1																																																									58
AAAC/GTTT	-	8	6	2	1		1																																																								18
AAAG/CTTT	-	54	28	6	3	3	2	1	2		1		1				2																																														103
AAAT/ATTT	-	21	2	2	1																																																										26
AACC/GGTT	-	13	3		1																																																										17
AACG/CGTT	-	1			1																																																										2
AACT/AGTT	-	5	2																																																												7
AAGC/CTTG	-	9	2	1		1		1																																																							14
AAGG/CCTT	-	13	7	3		1									1																																																25
AAGT/ACTT	-			2																																																											2
AATC/ATTG	-	32	14	5	6	2									1																																																60
AATG/ATTC	-	8	5																																																												13
AATT/AATT	-	4	1																																																												5
ACAG/CTGT	-	25	5	4			1			1	1		1																																																		38
ACAT/ATGT	-	31	15	5								1				1																																															53
ACCG/CGGT	-	8	2																																																												10
ACCT/AGGT	-	41	10	4	4	2											1																																														62
ACGG/CCGT	-	1	2																																																												3
ACTC/AGTG	-	3	3						1																																																						7
ACTG/AGTC	-	4	2	2		1																																																									9
AGAT/ATCT	-	15	4	1	2	2	1																																																								25
AGCC/CTGG	-	7	3	1																																																											11
AGCG/CGCT	-	3	2	2																																																											7
AGCT/AGCT	-	4	2																																																												6
AGGC/CCTG	-	6	5	1	2			1																																																							15
AGGG/CCCT	-	16	1																																																												17
ATCC/ATGG	-	14	3	5	2		1						1																																																		26
ATCG/ATCG	-	3																																																													3
ATGC/ATGC	-	4	1																																																												5
CCGG/CCGG	-	2																																																													2
AAAAC/GTTTT	25	3								1																																																					29
AAAAG/CTTTT	173	42	7	3			1						1																																																		227
AAAAT/ATTTT	70	12	5	1																																																											88
AAACC/GGTTT	15	4	1																																																												20
AAACG/CGTTT	4	1																																																													5
AAACT/AGTTT	4	2																																																													6
AAAGC/CTTTG	8	2											1																																																		11
AAAGG/CCTTT	19	5	3	2					1																																																						30
AAAGT/ACTTT	2																																																														2
AAATC/ATTTG	30	5	2																																																												37
AAATG/ATTTC	7	2																																																													9
AAATT/AATTT	15																																																														15
AACAC/GTGTT	4	1																																																													5
AACAG/CTGTT	7	2											1																																																		10
AACAT/ATGTT	7																																																														7
AACCC/GGGTT	11	2																																																													13
AACCG/CGGTT	1																																																														1
AACCT/AGGTT	3	1		1																																																											5
AACGC/CGTTG	2	1																																																													3
AACGG/CCGTT	2																																																														2
AACTC/AGTTG	2	1	1																																																												4
AACTG/AGTTC	5		1																																																												6
AAGAC/CTTGT	12	1	1			1																																																									15
AAGAG/CTCTT	34	3	1								1																																																				39
AAGAT/ATCTT	5		1																																																												6
AAGCC/CTTGG	6	1																																																													7
AAGCT/AGCTT	1																																																														1
AAGGC/CCTTG	4	2	1																																																												7
AAGGG/CCCTT	19	7	2	1																																																											29
AAGGT/ACCTT	8																																																														8
AAGTC/ACTTG	3	3																																																													6
AAGTG/ACTTC	1	1																																																													2
AATAC/ATTGT	3	1																																																													4
AATAG/ATTCT	5	2																																																													7
AATAT/ATATT	15	2		1																																																											18
AATCC/ATTGG	14	2	1	1																																																											18
AATCG/ATTCG	5																																																														5
AATCT/AGATT	5																																																														5
AATGC/ATTGC	12	2																																																													14
AATGG/ATTCC	11																																																														11
AATGT/ACATT	2																																																														2
AATTC/AATTG	5	3																																																													8
ACACC/GGTGT	8																																																														8
ACACG/CGTGT	3	1		1																																																											5
ACACT/AGTGT	3				1			1																																																							5
ACAGC/CTGTG	4	1																																																													5
ACAGG/CCTGT	11			1																																																											12
ACAGT/ACTGT	5																																																														5
ACATC/ATGTG	4	1																																																													5
ACATG/ATGTC	9	2	1	1																																																											13
ACCAG/CTGGT	11	5		1																																																											17
ACCAT/ATGGT	3																																																														3
ACCCC/GGGGT	4																																																														4
ACCCG/CGGGT	2	1																																																													3
ACCCT/AGGGT	4																																																														4
ACCGC/CGGTG		1																																																													1
ACCGG/CCGGT	1																																																														1
ACCGT/ACGGT	9																																																														9
ACCTC/AGGTG	3						1																																																								4
ACCTG/AGGTC	7		1																																																												8
ACGAG/CGTCT	12	1	1	1																																																											15
ACGAT/ATCGT	1																																																														1
ACGCC/CGTGG	3		1																																																												4
ACGCG/CGCGT	1																																																														1
ACGGC/CCGTG	2																																																														2
ACGGG/CCCGT	5		1																																																												6
ACGTC/ACGTG	3																																																														3
ACTAG/AGTCT	7	1		1																																																											9
ACTAT/AGTAT	1																																																														1
ACTCC/AGTGG	2																																																														2
ACTCG/AGTCG	4	1	1																																																												6
ACTCT/AGAGT	3																																																														3
ACTGC/AGTGC	2		1																																																												3
ACTGG/AGTCC	14																																																														14
AGAGC/CTCTG	5																																																														5
AGAGG/CCTCT	20	7	3	1																																																											31
AGATC/ATCTG	13	1																																																													14
AGATG/ATCTC	12	3	1	1																																																											17
AGCAT/ATGCT	3				1																																																										4
AGCCC/CTGGG	9	1																																																													10
AGCCG/CGGCT	1	1																																																													2
AGCGC/CGCTG	2																																																														2
AGCGG/CCGCT	2																																																														2
AGCTC/AGCTG	8	1	1																																																												10
AGGAT/ATCCT	5	2	2																																																												9
AGGCC/CCTGG	3																																																														3
AGGCG/CCTCG	4																																																														4
AGGGC/CCCTG	3					1																																																									4
AGGGG/CCCCT	26	3																																																													29
ATATC/ATATG	20	5		1																																																											26
ATCCC/ATGGG	17	4			1																																																										22
ATCCG/ATCGG	5																																																														5
ATCGC/ATGCG	6	4																																																													10
ATGCC/ATGGC	8	2																																																													10
CCCCG/CGGGG	2																																																														2
CCCGG/CCGGG	1																																																														1
CCGCG/CGCGG	1																																																														1
AAAAAC/GTTTTT	2																																																														2
AAAAAG/CTTTTT	65	14	1		1																																																										81
AAAAAT/ATTTTT	31	5			1																																																										37
AAAACC/GGTTTT	3	1																																																													4
AAAACG/CGTTTT	1																																																														1
AAAAGC/CTTTTG	1																																																														1
AAAAGG/CCTTTT	7	4																																																													11
AAAAGT/ACTTTT	1																																																														1
AAAATC/ATTTTG	1																																																														1
AAAATG/ATTTTC	3	2		1																																																											6
AAACAC/GTGTTT	1																																																														1
AAACAG/CTGTTT	2																																																														2
AAACAT/ATGTTT				1																																																											1
AAACCC/GGGTTT	2	2	2																																																												6
AAACCG/CGGTTT	1	1																																																													2
AAACGC/CGTTTG	2																																																														2
AAACGG/CCGTTT	3																																																														3
AAACTG/AGTTTC	1	1																																																													2
AAAGAC/CTTTGT	1																																																														1
AAAGAG/CTCTTT	10	4	1	1																																																											16
AAAGCC/CTTTGG	1																																																														1
AAAGCG/CGCTTT	2																																																														2
AAAGGC/CCTTTG	2																																																														2
AAAGGG/CCCTTT	2																																																														2
AAAGGT/ACCTTT	1	1																																																													2
AAAGTC/ACTTTG		1																																																													1
AAATAG/ATTTCT	3	1																																																													4
AAATAT/ATATTT	2																																																														2
AAATCC/ATTTGG	3																																																														3
AAATCG/ATTTCG	1																																																														1
AAATCT/AGATTT	1																																																														1
AAATGC/ATTTGC	2	1																																																													3
AAATGG/ATTTCC	5	1																																																													6
AAATGT/ACATTT	1																																																														1
AAATTG/AATTTC	1																																																														1
AACAAG/CTTGTT	1																																																														1
AACAAT/ATTGTT	2																																																														2
AACACC/GGTGTT	7	1	1																																																												9
AACACG/CGTGTT	1																																																														1
AACAGC/CTGTTG	10	7	1																																																												18
AACAGG/CCTGTT	1	1																																																													2
AACAGT/ACTGTT		1																																																													1
AACATC/ATGTTG	2	1																																																													3
AACATG/ATGTTC	6	1																																																													7
AACCAC/GGTTGT	3																																																														3
AACCAG/CTGGTT	4																																																														4
AACCAT/ATGGTT	1		1																																																												2
AACCCC/GGGGTT	2																																																														2
AACCCG/CGGGTT	6	1																																																													7
AACCGC/CGGTTG	1																																																														1
AACCGG/CCGGTT	2																																																														2
AACCTC/AGGTTG	2		1																																																												3
AACCTG/AGGTTC	1																																																														1
AACGAC/CGTTGT	3																																																														3
AACGAG/CGTTCT	3																																																														3
AACGCC/CGTTGG	1																																																														1
AACGCG/CGCGTT	1																																																														1
AACGGC/CCGTTG	1																																																														1
AACGGG/CCCGTT	1																																																														1
AACGTC/ACGTTG	1																																																														1
AACTAC/AGTTGT	1																																																														1
AACTAG/AGTTCT	1																																																														1
AACTAT/AGTTAT	1																																																														1
AACTCC/AGTTGG	1																																																														1
AACTGG/AGTTCC	2																																																														2
AACTTC/AAGTTG	3	1																																																													4
AACTTG/AAGTTC	1																																																														1
AAGAAT/ATTCTT	1	2	1																																																												4
AAGACC/CTTGGT	2																																																														2
AAGACG/CGTCTT	5			1																																																											6
AAGACT/AGTCTT	1																																																														1
AAGAGC/CTCTTG	2																																																														2
AAGAGG/CCTCTT	38	3																																																													41
AAGAGT/ACTCTT	1																																																														1
AAGATC/ATCTTG	2																																																														2
AAGATG/ATCTTC	10	1																																																													11
AAGCAC/CTTGTG		1																																																													1
AAGCAG/CTGCTT	2																																																														2
AAGCCC/CTTGGG	6																																																														6
AAGCCG/CGGCTT	2																																																														2
AAGCGG/CCGCTT	1																																																														1
AAGCTC/AGCTTG	1																																																														1
AAGGAC/CCTTGT	1																																																														1
AAGGAG/CCTTCT	10	1																																																													11
AAGGAT/ATCCTT	1																																																														1
AAGGCG/CCTTCG	4																																																														4
AAGGCT/AGCCTT	1																																																														1
AAGGGC/CCCTTG	8																																																														8
AAGGGG/CCCCTT	9	1			1																																																										11
AAGGTC/ACCTTG	2																																																														2
AAGGTG/ACCTTC	2																																																														2
AAGTAC/ACTTGT		1																																																													1
AAGTAG/ACTTCT	5	1	1																																																												7
AAGTAT/ACTTAT	1																																																														1
AAGTCC/ACTTGG	3	1		1																																																											5
AAGTCG/ACTTCG	4																																																														4
AAGTGG/ACTTCC	1	1	1																																																												3
AATACT/AGTATT	1																																																														1
AATAGC/ATTGCT	1																																																														1
AATAGG/ATTCCT	1																																																														1
AATATC/ATATTG	1																																																														1
AATATG/ATATTC	1																																																														1
AATATT/AATATT	2																																																														2
AATCAC/ATTGTG	3																																																														3
AATCAG/ATTCTG	3																																																														3
AATCAT/ATGATT	1																																																														1
AATCCC/ATTGGG	2																																																														2
AATCCG/ATTCGG	2	1																																																													3
AATCCT/AGGATT	1																																																														1
AATCGC/ATTGCG	1	1																																																													2
AATCGG/ATTCCG	1																																																														1
AATCGT/ACGATT		1																																																													1
AATCTC/AGATTG	1																																																														1
AATCTG/AGATTC	1	1																																																													2
AATGAT/ATCATT	1	1																																																													2
AATGCC/ATTGGC	1																																																														1
AATGGC/ATTGCC	3																																																														3
AATGGG/ATTCCC	2																																																														2
AATGTC/ACATTG	3																																																														3
AATGTG/ACATTC	1																																																														1
AATTAC/AATTGT	1																																																														1
AATTAG/AATTCT	1																																																														1
AATTCC/AATTGG	1																																																														1
ACACAG/CTGTGT	2																																																														2
ACACAT/ATGTGT	2																																																														2
ACACCC/GGGTGT	1																																																														1
ACACCG/CGGTGT	3	2																																																													5
ACACGC/CGTGTG	1																																																														1
ACACGG/CCGTGT	1																																																														1
ACACTG/AGTGTC	4		1																																																												5
ACAGAG/CTCTGT	3																																																														3
ACAGAT/ATCTGT	3																																																														3
ACAGCC/CTGTGG	1																																																														1
ACAGCG/CGCTGT	5	1																																																													6
ACAGCT/AGCTGT		1																																																													1
ACAGGC/CCTGTG	2	1																																																													3
ACAGGG/CCCTGT	4	2																																																													6
ACAGGT/ACCTGT	1	1																																																													2
ACAGTG/ACTGTC	2																																																														2
ACATAG/ATGTCT	2																																																														2
ACATCC/ATGTGG	1	1																																																													2
ACATCG/ATGTCG	1	1																																																													2
ACATCT/AGATGT	1	2																																																													3
ACATGC/ATGTGC	1																																																														1
ACATGG/ATGTCC	4	1																																																													5
ACATGT/ACATGT	1																																																														1
ACCACG/CGTGGT			1																																																												1
ACCACT/AGTGGT	1																																																														1
ACCAGC/CTGGTG	7	1																																																													8
ACCAGG/CCTGGT	1	2																																																													3
ACCATC/ATGGTG	4	2																																																													6
ACCATG/ATGGTC	2																																																														2
ACCCAT/ATGGGT	1	1																																																													2
ACCCGG/CCGGGT	2																																																														2
ACCCTC/AGGGTG	2																																																														2
ACCCTG/AGGGTC		1																																																													1
ACCGAG/CGGTCT	2																																																														2
ACCGCC/CGGTGG	2																																																														2
ACCGCG/CGCGGT	2																																																														2
ACCGGC/CCGGTG	5	1																																																													6
ACCGTC/ACGGTG	2	1																																																													3
ACCGTG/ACGGTC	3																																																														3
ACCTAG/AGGTCT	2																																																														2
ACCTAT/AGGTAT	1																																																														1
ACCTCC/AGGTGG	5																																																														5
ACCTCG/AGGTCG	2	2																																																													4
ACCTGC/AGGTGC	3																																																														3
ACCTGG/AGGTCC	4	1																																																													5
ACGACT/AGTCGT	1																																																														1
ACGAGC/CGTGCT	1																																																														1
ACGAGG/CCTCGT	8		1																																																												9
ACGATC/ATCGTG	3																																																														3
ACGATG/ATCGTC	5																																																														5
ACGCAG/CGTCTG	2																																																														2
ACGCCC/CGTGGG	2																																																														2
ACGCCG/CGGCGT	3	1																																																													4
ACGCCT/AGGCGT		1																																																													1
ACGCGG/CCGCGT	1																																																														1
ACGCTC/AGCGTG	1																																																														1
ACGGAG/CCGTCT	1																																																														1
ACGGCC/CCGTGG	4																																																														4
ACGGCG/CCGTCG	4																																																														4
ACGGCT/AGCCGT		1																																																													1
ACGGGG/CCCCGT	3	1																																																													4
ACGTAG/ACGTCT							1																																																								1
ACTAGC/AGTGCT	1																																																														1
ACTAGG/AGTCCT	2																																																														2
ACTAGT/ACTAGT	1																																																														1
ACTATC/AGTGAT	1																																																														1
ACTCAG/AGTCTG	2																																																														2
ACTCAT/AGTATG	2																																																														2
ACTCCC/AGTGGG	1																																																														1
ACTCCG/AGTCGG	4																																																														4
ACTCCT/AGGAGT	1																																																														1
ACTCGC/AGTGCG	2																																																														2
ACTCGG/AGTCCG	3																																																														3
ACTCTC/AGAGTG		1																																																													1
ACTCTG/AGAGTC	1	2																																																													3
ACTGCC/AGTGGC	2																																																														2
ACTGCG/AGTCGC	4																																																														4
ACTGCT/AGCAGT	2	1																																																													3
ACTGGC/AGTGCC	1																																																														1
ACTGGG/AGTCCC	1																																																														1
AGAGAT/ATCTCT	1																																																														1
AGAGCC/CTCTGG	7	2																																																													9
AGAGCG/CGCTCT	2																																																														2
AGAGCT/AGCTCT	2																																																														2
AGAGGC/CCTCTG	3																																																														3
AGAGGG/CCCTCT	15	4	3																																																												22
AGATAT/ATATCT	1	2																																																													3
AGATCC/ATCTGG	3																																																														3
AGATGC/ATCTGC	7																																																														7
AGATGG/ATCTCC	8	1	1	1																																																											11
AGCAGG/CCTGCT	7			1																																																											8
AGCATC/ATGCTG	2	1	1																																																												4
AGCATG/ATGCTC	5	1		1																																																											7
AGCCAT/ATGGCT	2	1																																																													3
AGCCCC/CTGGGG	3																																																														3
AGCCCG/CGGGCT	6	1																																																													7
AGCCCT/AGGGCT	2																																																														2
AGCCGC/CGGCTG	3																																																														3
AGCCGG/CCGGCT	7	1																																																													8
AGCCTC/AGGCTG	3	1																																																													4
AGCCTG/AGGCTC	3	2																																																													5
AGCGAT/ATCGCT	1																																																														1
AGCGCG/CGCGCT	2																																																														2
AGCGGC/CCGCTG	8																																																														8
AGCGGG/CCCGCT	4																																																														4
AGCTCC/AGCTGG	4	1																																																													5
AGCTGC/AGCTGC	1																																																														1
AGGATC/ATCCTG	1																																																														1
AGGATG/ATCCTC	13	1																																																													14
AGGCCC/CCTGGG	2																																																														2
AGGCCG/CCTCGG	1																																																														1
AGGCGC/CCTGCG	4	1																																																													5
AGGCGG/CCGCCT	2																																																														2
AGGGAT/ATCCCT	1	1																																																													2
AGGGCC/CCCTGG	2																																																														2
AGGGCG/CCCTCG	1																																																														1
AGGGGC/CCCCTG		1																																																													1
AGGGGG/CCCCCT	10																																																														10
ATATCC/ATATGG	3	1																																																													4
ATCATG/ATCATG	2																																																														2
ATCCCC/ATGGGG	4																																																														4
ATCCCG/ATCGGG	2																																																														2
ATCCGC/ATGCGG	1																																																														1
ATCGCC/ATGGCG	7																																																														7
ATCGCG/ATCGCG	2																																																														2
ATCGGC/ATGCCG	5	2																																																													7
ATGCCC/ATGGGC		1																																																													1
CCCGCG/CGCGGG	3																																																														3
CCGCGG/CCGCGG	2																																																														2
CCGGCG/CCGGCG	1																																																														1
